<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/37813?offset=70 https://bioinformaticsonline.com/bookmarks/view/43683/genview-a-phylogeny-based-comparative-genomics-software-to-analyze-the-genetic-environment-of-genes Tue, 28 Dec 2021 01:49:03 -0600 https://bioinformaticsonline.com/bookmarks/view/43683/genview-a-phylogeny-based-comparative-genomics-software-to-analyze-the-genetic-environment-of-genes <![CDATA[GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes]]> A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for the respective gene. Alternatively, custom genomes can be provided. User selected stretches (20kbp by default) of the genes genetic environment are extracted, annotated and aligned between all genomes. The sequences are then visualized, enabling comparison of synteny and gene content.

More at https://pubmed.ncbi.nlm.nih.gov/34951622/

Address of the bookmark: https://github.com/EbmeyerSt/GEnView

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/44894/dna2bit-an-ultra-fast-and-accurate-genomic-distance-estimation-software Sun, 31 Aug 2025 06:24:58 -0500 https://bioinformaticsonline.com/bookmarks/view/44894/dna2bit-an-ultra-fast-and-accurate-genomic-distance-estimation-software <![CDATA[dna2bit: an ultra-fast and accurate genomic distance estimation software]]> dna2bit is a software tool developed in C++11, leveraging the capabilities of OpenMP for parallel computing and the popcount technique for efficient bit manipulation. It has been thoroughly tested using the g++ and clang compilers on both Linux and MacOS platforms.

Address of the bookmark: https://github.com/lijuzeng/dna2bit

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