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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/38226?offset=30</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</guid>
	<pubDate>Fri, 03 Jun 2016 05:06:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</link>
	<title><![CDATA[HistoneDB 2.0 – with variants]]></title>
	<description><![CDATA[<p><span>This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To get started, select a histone type to explore its variants.</span></p>
<p><span>More at&nbsp;http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</span></p><p>Address of the bookmark: <a href="http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/" rel="nofollow">http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/32719/download-assemblies-from-ncbi</guid>
	<pubDate>Mon, 15 May 2017 06:02:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/32719/download-assemblies-from-ncbi</link>
	<title><![CDATA[Download assemblies from NCBI]]></title>
	<description><![CDATA[<p>A new &ldquo;Download assemblies&rdquo; button is now available in the&nbsp;<a href="https://www.ncbi.nlm.nih.gov/assembly" target="_blank">Assembly</a>&nbsp;database. This makes it easy to download data for multiple genomes without having to write scripts.</p><p>For example, you can run a search in Assembly and use check boxes (see left side of screenshot below) to refine the set of genome assemblies of interest. Then, just open the &ldquo;Download assemblies&rdquo; menu, choose the source database (<a href="https://www.ncbi.nlm.nih.gov/genbank/" target="_blank">GenBank</a>&nbsp;or&nbsp;<a href="https://www.ncbi.nlm.nih.gov/refseq/" target="_blank">RefSeq</a>), choose the file type, and start the download. An archive file will be saved to your computer that can be expanded into a folder containing your selected genome data files.</p><p><img src="https://ncbiinsights.files.wordpress.com/2017/05/download_button.jpg?w=584" alt="image" width="584" height="444" style="border: 0px; border: 0px;"></p><p>&nbsp;</p><p>More at&nbsp;https://ncbiinsights.ncbi.nlm.nih.gov/2017/05/08/genome-data-download-made-easy/</p>]]></description>
	<dc:creator>Bulbul</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39865/blast-nr-version-5-database-nr-v5</guid>
	<pubDate>Fri, 23 Aug 2019 11:35:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39865/blast-nr-version-5-database-nr-v5</link>
	<title><![CDATA[BLAST nr version 5 database, (nr_v5)]]></title>
	<description><![CDATA[<p>NCBI have made changes the nr version 5 database, (nr_v5), to facilitate better search results and improved performance by reducing the number of redundant titles in the nr_v5 database used by webBLAST, which is also available for&nbsp;BLAST+ users.</p><p><span style="text-decoration: underline;"></span></p><p>The changes in nr preserve the taxonomic diversity of the entries in the database while reducing the number of titles for identical sequences. GenPept accessions are still accessible via&nbsp;<a href="http://www.ncbi.nlm.nih.gov/protein/$GENBANK_ACCESSION" target="_blank">www.ncbi.nlm.nih.gov/protein/$GENBANK_ACCESSION</a>&nbsp;or the IPG website&nbsp;<a href="https://www.ncbi.nlm.nih.gov/ipg/" target="_blank">https://www.ncbi.nlm.nih.gov/ipg/</a>.<span style="text-decoration: underline;"></span><span style="text-decoration: underline;"></span></p><p>The "Identical Proteins" link in the alignments section of the webBLAST results takes you to a full list of all accessions associated with a sequence.</p><p><span style="text-decoration: underline;"></span></p><p>For&nbsp;BLAST+ users downloading nr_v5: the database is now approximately 50% smaller, resulting in faster downloads and&nbsp;BLAST&nbsp;searches, and smaller disk space requirements. The database is downloadable at: &nbsp;<a href="ftp://ftp.ncbi.nlm.nih.gov/blast/db/v5/" target="_blank">ftp://ftp.ncbi.nlm.nih.gov/blast/db/v5/</a></p><p><span style="text-decoration: underline;"></span></p><p>For&nbsp;BLAST+ there is a cleanup script to help you manage the transition to this smaller database. The script removes unused database volumes:&nbsp;<a href="ftp://ftp.ncbi.nlm.nih.gov/blast/temp/cleanup-blastdb-volumes.py" target="_blank">ftp://ftp.ncbi.nlm.nih.gov/blast/temp/cleanup-blastdb-volumes.py</a></p><p><span style="text-decoration: underline;"></span></p><p>Here are the new rules on how we keep titles in nr_v5:</p><p><span style="text-decoration: underline;"></span></p><p>1.&nbsp;&nbsp;&nbsp; We keep all refseq, swissprot, pir and PDB titles.<span style="text-decoration: underline;"></span><span style="text-decoration: underline;"></span></p><p>2.&nbsp; &nbsp;&nbsp;We keep any GenPept titles with a TAXID that has not already been seen in the record.<span style="text-decoration: underline;"></span><span style="text-decoration: underline;"></span></p><p>3.&nbsp; &nbsp;&nbsp;We keep at least five GenPept titles regardless of whether the TAXIDS have been seen before or not in this record.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/42370/ncbi-blast-have-added-new-columns-to-the-descriptions</guid>
	<pubDate>Tue, 01 Dec 2020 09:56:07 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/42370/ncbi-blast-have-added-new-columns-to-the-descriptions</link>
	<title><![CDATA[NCBI BLAST have added new columns to the Descriptions]]></title>
	<description><![CDATA[<p><span>NCBI BLAST have added new columns to the Descriptions Table for web BLAST output. The new columns are&nbsp; Scientific Name, Common Name, Taxid, and Accession Length. Common Name and Accession Length are now part of the default display. You can click 'Select columns' or 'Manage columns' to add or remove columns from the display Your preferences will be saved for your next visit to BLAST, and when you download your results, whatever columns you have displayed will be saved. See the NCBI Insights post (</span><a href="https://go.usa.gov/x7fPE" target="_blank">https://go.usa.gov/x7fPE</a><span>) for more details.</span></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29998/csir-nehru-science-postdoctoral-research-fellowship</guid>
  <pubDate>Tue, 29 Nov 2016 12:34:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[CSIR Nehru Science Postdoctoral Research Fellowship]]></title>
  <description><![CDATA[
<p>CSIR Nehru Science Postdoctoral Research Fellowship</p>

<p>About Fellowship: <br />CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows.</p>

<p>It was started to identify promising and young researchers with novel ideas and provide them research opportunities in the areas of basic science, engineering, medicine &amp; agriculture.</p>

<p>The fellowship aims at facilitating their transition from mentored to independent research career.</p>

<p>In addition, check these ICTS Research Fellowships:<br />1.) Max-Planck Partner Group Fellowships 2017-18<br />2.) ICTS-Simons Postdoctoral Fellowships 2017<br />3.) ICTS Post Doctoral Fellowships 2017<br />4.) Airbus Prize Postdoctoral Fellowship 2017-18</p>

<p>Eligibility: To be eligible for this fellowship, you:<br />1.) PhD degree (within 3 years of award of PhD degree), OR<br />2.) Those who have submitted PhD theses.<br />3.) Applicants should have research publications in good impact factor SCI journals.<br />4.) Indian nationals, Persons of Indian Origin (PIO) &amp; Overseas Citizen of India (OCI), a can also apply.<br />5.) Maximum Age Limit: 32 years.</p>

<p>Duration: <br />– 2 Years.<br />– extendable for a maximum of 1 more year based on performance.</p>

<p>Remuneration: <br />– Rs. 50,000/- per month plus House Rent Allowance (HRA)<br />– A contingency grant of Rs. 3.0 lakh per annum.<br />– 25% of the contingency grant can be used for domestic and international travel.</p>

<p>Mode of Selection: You can apply throughout the year, but selection will be made twice a year, in June and December.</p>

<p>How to Apply: <br />– Read the instructions, given at Annexure-I in this PDF file.<br />– And, application form is given as, Annexure-II.<br />– Fill the form &amp; send it to the given address in the PDF file.</p>

<p>Deadline: Rolling Deadline (Applications accepted throughout the year)</p>

<p>Also See: Research Internship/ Fellowship in India:<br />1.) IIT Bombay Research Internship Awards Programme 2016-17<br />2.) IIT Delhi Internship Program 2016-17<br />3.) DAAD WISE – International Internship in Germany<br />4.) Summer Research Fellowship Programme| JNCASR Bangalore<br />5.) Indian Academy of Sciences Summer Internships 2017<br />6.) Winter Internship – IIT Bombay NPDE-TCA<br />7.) Viterbi – India Program 2017 | Research Internship in US<br />8.) Internship – Centre for Stem Cell Research, Vellore</p>

<p>Accommodation &amp; other benefits: <br />– Accommodation may be provided by CSIR, if available.<br />– Medical benefits as per CSIR norms.</p>

<p>For more details: <br />– Check this PDF Notification of Fellowship.<br />– List of CSIR Labs &amp; their work/activities can be seen at www.csir.res.in.</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/34780/science-corps-fellows-to-teach-science-to-underserved-students-and-build-science-capacity-in-the-developing-world</guid>
  <pubDate>Sat, 23 Dec 2017 01:48:21 -0600</pubDate>
  <link></link>
  <title><![CDATA[Science-Corps Fellows, to teach science to underserved students and build science capacity in the developing world]]></title>
  <description><![CDATA[
<p>*Science-Corps* *Providing an opportunity for recent PhD graduates, as Science-Corps Fellows, to teach science to underserved students and build science capacity in the developing world*</p>

<p>Interested in taking a six month break from the research/academic track to work in a different part of the world and share your expertise where it is needed? Science-Corps has launched a new fellowship, which provides STEM PhD graduates the opportunity to teach science, design curriculum, and build scientific capacity abroad.</p>

<p>Science-Corps is recruiting STEM PhD students near degree completion and up to four years post completion for placement starting June of 2018. </p>

<p>Applications are due by January 31, 2018.</p>

<p>If interested, visit http://www.science-corps.org/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4183/320000-viruses-in-mammals-yet-to-sequenced-in-future</guid>
	<pubDate>Tue, 03 Sep 2013 08:35:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4183/320000-viruses-in-mammals-yet-to-sequenced-in-future</link>
	<title><![CDATA[320000 viruses in mammals yet to sequenced in future!!!]]></title>
	<description><![CDATA[<p>With current biological technique improvements, finally it is now possible to look at millions of unknown viruses at genomic level and understand the mechanism. According to available data, close to 70 per cent of emerging viral diseases such as HIV/AIDS, West Nile, Ebola, SARS, and influenza, are zoonoses - infections of animals that cross into humans.</p><p>To address the challenges of describing and estimating virodiversity, a team of investigators from Center for Infection and Immunity (CII) and EcoHealth Alliance began in jungles of Bangladesh - home to the flying fox.</p><p>Reference:</p><p><a href="http://economictimes.indiatimes.com/news/news-by-industry/et-cetera/mammals-harbour-at-least-320000-new-viruses/articleshow/22253268.cms">http://economictimes.indiatimes.com/news/news-by-industry/et-cetera/mammals-harbour-at-least-320000-new-viruses/articleshow/22253268.cms</a></p><p><a href="http://www.bbc.co.uk/news/science-environment-23932400">http://www.bbc.co.uk/news/science-environment-23932400</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43643/corona-virus-literature</guid>
	<pubDate>Sun, 12 Dec 2021 23:30:56 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43643/corona-virus-literature</link>
	<title><![CDATA[Corona Virus Literature !]]></title>
	<description><![CDATA[<p><span><span>LitCovid</span>&nbsp;is a curated literature hub for tracking up-to-date scientific information about the 2019 novel Coronavirus.</span><span>&nbsp;It is the most comprehensive resource on the subject, providing a central access to&nbsp;</span><span>201482</span><span>&nbsp;(and&nbsp;</span><span>growing</span><span>) relevant articles in PubMed. The articles are updated daily and are further categorized by different research topics (e.g.&nbsp;</span><span>Long Covid</span><span>) and geographic locations for improved access. You can learn more at&nbsp;</span><a href="https://www.nature.com/articles/d41586-020-00694-1" target="_blank">Chen et al. Nature</a><span>&nbsp;(2020) or our&nbsp;</span><span>FAQ</span><span>, and download our data&nbsp;</span><a href="https://www.ncbi.nlm.nih.gov/research/coronavirus/#data-download">here</a><span>.</span></p>
<p>https://www.ncbi.nlm.nih.gov/research/coronavirus/</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/research/coronavirus/" rel="nofollow">https://www.ncbi.nlm.nih.gov/research/coronavirus/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44518/virus-bioinformatics-tools</guid>
	<pubDate>Wed, 24 Apr 2024 06:19:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44518/virus-bioinformatics-tools</link>
	<title><![CDATA[Virus Bioinformatics Tools]]></title>
	<description><![CDATA[<p><span>Bioinformatics tools play a crucial role in studying viruses, enabling researchers to analyze their genetic makeup, structure, function, and evolution. Here are some commonly used bioinformatics tools for virus research</span></p>
<p>https://evirusbioinfc.notion.site/18e21bc49827484b8a2f84463cb40b8d?v=92e7eb6703be4720abf17a901bc9a947</p><p>Address of the bookmark: <a href="https://evirusbioinfc.notion.site/18e21bc49827484b8a2f84463cb40b8d?v=92e7eb6703be4720abf17a901bc9a947" rel="nofollow">https://evirusbioinfc.notion.site/18e21bc49827484b8a2f84463cb40b8d?v=92e7eb6703be4720abf17a901bc9a947</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/5731/influenza-animation-flu-virus-mechanism</guid>
	<pubDate>Thu, 17 Oct 2013 19:43:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/5731/influenza-animation-flu-virus-mechanism</link>
	<title><![CDATA[Influenza animation - flu virus mechanism]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/YSgkoldBNkI" frameborder="0" allowfullscreen></iframe>Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent further spread of influenza. 

Client: Crucell
Direction, Design & Animation: Daniel Lim, 2Preform
Music & Sound Design: Javier Barrero, Logical Disorder
Production Company: David Hager, All Terrain Media]]></description>
	
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