<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/38561?offset=600 https://bioinformaticsonline.com/bookmarks/view/38801/genome-assembly-forensics-finding-the-elusive-mis-assembly Sat, 26 Jan 2019 18:02:01 -0600 https://bioinformaticsonline.com/bookmarks/view/38801/genome-assembly-forensics-finding-the-elusive-mis-assembly <![CDATA[Genome assembly forensics: finding the elusive mis-assembly]]> We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and describes their implementation in our automated validation pipeline, called amosvalidate. We demonstrate the application of our pipeline in both bacterial and eukaryotic genome assemblies, and highlight several assembly errors in both draft and finished genomes. The software described is compatible with common assembly formats and is released, open-source, at http://amos.sourceforge.net.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397507/ 

http://amos.sourceforge.net/wiki/index.php/AMOS

Address of the bookmark: http://amos.sourceforge.net/wiki/index.php/AMOS

]]> Jit https://bioinformaticsonline.com/bookmarks/view/39626/geval-genome-evaluation-browser Tue, 18 Jun 2019 05:39:08 -0500 https://bioinformaticsonline.com/bookmarks/view/39626/geval-genome-evaluation-browser <![CDATA[gEVAL: Genome Evaluation Browser]]> The gEVAL Browser allows the evaluation of genome assemblies through its tools and pre-computed analyses.

The strength of this browser is the ability to navigate an up to date assembly and identify problematic regions and assist in strategizing potential solutions for these issues.

This facilitates the improvement of overall assemblies to a “gold” standard for release as reference genomes

Address of the bookmark: https://geval.sanger.ac.uk/index.html

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