<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/38618?offset=670 https://bioinformaticsonline.com/bookmarks/view/38199/pacasus-correction-of-palindromes-in-long-reads-from-pacbio-and-nanopore Mon, 12 Nov 2018 05:26:48 -0600 https://bioinformaticsonline.com/bookmarks/view/38199/pacasus-correction-of-palindromes-in-long-reads-from-pacbio-and-nanopore <![CDATA[Pacasus: Correction of palindromes in long reads from PacBio and Nanopore]]>
Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source folder: https://github.com/swarris/Pacasus/blob/master/vib2017.pdf.

The prepint version is found on http://www.biorxiv.org/content/early/2017/08/09/173872

It uses the pyPaSWAS framework for sequence alignment (https://github.com/swarris/pyPaSWAS)

Address of the bookmark: https://github.com/swarris/Pacasus

]]> BioStar https://bioinformaticsonline.com/bookmarks/view/40699/kevler-reference-free-variant-discovery-in-large-eukaryotic-genomes Tue, 28 Jan 2020 03:21:53 -0600 https://bioinformaticsonline.com/bookmarks/view/40699/kevler-reference-free-variant-discovery-in-large-eukaryotic-genomes <![CDATA[Kevler: Reference-free variant discovery in large eukaryotic genomes]]> Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs), insertion/deletion variants (indels), and structural variants (SVs) simultaneously with a single simple model. 

More at https://kevlar.readthedocs.io/en/latest/

https://www.cell.com/iscience/pdf/S2589-0042(19)30259-7.pdf

Address of the bookmark: https://github.com/kevlar-dev/kevlar

]]> Jit https://bioinformaticsonline.com/videolist/watch/4851/blast Wed, 25 Sep 2013 10:56:23 -0500 https://bioinformaticsonline.com/videolist/watch/4851/blast <![CDATA[BLAST]]> Dr. Rob Edwards describes how BLAST works]]>