Abhimanyu Singh
A bioinformatics beginner
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Phylogenomics/Phylogenetic website
By Aaryan Lokwani 3884 days agohttp://phylobabble.org/ - Welcome to phylobabble.org, a discussion forum for phylogenetic theory and applications. The primary goal of this forum is to discuss best practice and new developments in phylogenetics. Although we do have a Troubleshooting category for getting...HaploTypo: a variant-calling pipeline for phased genomes
By Jit 1801 days agogithub.com - An increasing number of phased (i.e. with resolved haplotypes) reference genomes are available. However, most genetic variant calling tools do not explicitly account for haplotype structure. Here, we present HaploTypo, a pipeline tailored to resolve...SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
By Jit 1744 days agogithub.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:BioCodes/BioScripts
By Jit 3868 days agogithub.com - Over the years most bioinformatics people amass a collection of small utility scripts which make their lives easier. Too often they are kept either in private repositories or as part of a public collection to which noone else can contribute. Biocode...PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
By BioStar 1563 days agogithub.com - PyParanoid is a pipeline for rapid identification of homologous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends...RA at ALAGAPPA UNIVERSITY
DEPARTMENT OF BIOTECHNOLOGY (UGC SAP and DST-FIST & PURSE Sponsored Department) ALAGAPPA UNIVERSITY (A State University Accredited by NAAC with „A‟ Grade) Karaikudi - 630 004, India WALK IN INTERVIEW A walk-in Interview for the...AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads
By Rahul Nayak 1350 days agogithub.com - AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...Associate Professor - Bio-Informatics at University of Allahabad in Allahabad
No of vacancies: 01 Pay scale: Pay Band of Rs. 37400-67000 with AGP of Rs. 9000. i. Educational Qualification: Good academic record with a Ph.D. Degree in the concerned/allied/relevant disciplines. ii. A Master's Degree with at least 55%...MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
By Abhi 445 days agogithub.com - MitoHiFi v3.2 is a python pipeline distributed under MIT License ! MitoHiFi was first developed to assemble the mitogenomes for a wide range of species in the Darwin Tree of Life Project...
