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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/39450?offset=380</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/9429/srf-vacancy-at-nipgr</guid>
  <pubDate>Tue, 25 Mar 2014 19:20:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF Vacancy at NIPGR]]></title>
  <description><![CDATA[
<p>Applications are invited from suitable candidates for filling up the purely temporary position of one Senior Research Fellow in DST’s Indo-Australian Joint project (with ICRISAT) entitled “Genomic Approach for Stress Tolerant Chickpea” under the guidance of Dr. Mukesh Jain, Scientist, NIPGR.</p>

<p>(A) Senior Research Fellow (One Post):    Emoluments as per DST/DBT norms.</p>

<p>Candidates having M.Sc. degree (with minimum of 55% marks) or equivalent in Life Sciences/Biotechnology/Bioinformatics/ Molecular Biology or any other related field with minimum of two years of post M.Sc. research experience are eligible to apply. The candidate having computer skill (Linux, Perl, Java, MySQL) and/or experience in advanced molecular biology, next generation sequencing data analysis and molecular markers analysis will be preferred.</p>

<p>The position is completely on temporary basis and co-terminus with the project. The initial appointment will be for one year, which can be curtailed/extended on the basis of assessment of the candidate’s performance and discretion of the Competent Authority. NIPGR reserves the right to select the candidate against the above posts depending upon the qualifications and experience of the candidates. Reservation of posts shall be as per Govt. of India norms.</p>

<p>Eligible candidates may apply by sending hard copy of completed application in the given format with a cover letter showing interest and attested copies of the certificates and proof of research experience. The applications should reach at the address given below within 15 days from the date of the advertisement. The subject line on envelope must be superscribed by “Application for the Post of SRF in DST - AISRF project”.</p>

<p>Note: ONLY hard copy of the application in the given format will be accepted.</p>

<p>Last date April 03, 2014</p>

<p>Dr. Mukesh Jain<br />Staff Scientist<br />National Institute of Plant Genome Research<br />Aruna Asaf Ali Marg, P.O. Box NO. 10531,<br />New Delhi - 110067</p>

<p>Advertisement: http://www.nipgr.res.in/careers/vacancies_latest.php#</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44934/genomic-basis-of-evolutionary-innovations-gevol</guid>
	<pubDate>Sat, 06 Dec 2025 06:11:00 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44934/genomic-basis-of-evolutionary-innovations-gevol</link>
	<title><![CDATA[Genomic Basis of Evolutionary Innovations (GEvol)]]></title>
	<description><![CDATA[<p>The Priority Programme (SPP 2349) funded by German Science Foundation (DFG) started 2022: &bdquo;Genomic Basis of Evolutionary Innovations (GEvol)&ldquo;</p>
<p>GEvol is unique as it will use, for the first time, a large taxonomic group to focus on one goal: to characterise the dynamics and mechanisms of genomic innovations underlying novel traits using comparative evolutionary genomics (and related data).<br>Thus, projects participating in GEvol we will ask fundamental evolutionary questions such as:<br>1. At what level is evolution repeatable?<br>2. How does genomic plasticity interfere with phenotypic plasticity during evolution?<br>3. How do inter- and intra-specific interactions influence genomic architectures?<br>4. How predictable is phenotypic variation given some knowledge about the dynamics and mechanisms of underlying genome evolution?</p><p>Address of the bookmark: <a href="https://g-evol.uni-muenster.de/open-positions/" rel="nofollow">https://g-evol.uni-muenster.de/open-positions/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34678/svfinder-tool-for-detecting-genomic-rearrangement-form-dna-seq-data</guid>
	<pubDate>Thu, 14 Dec 2017 15:51:40 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34678/svfinder-tool-for-detecting-genomic-rearrangement-form-dna-seq-data</link>
	<title><![CDATA[SVfinder: Tool for detecting genomic rearrangement form DNA-seq data]]></title>
	<description><![CDATA[<p><span>SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.</span></p><p>Address of the bookmark: <a href="https://github.com/cauyrd/SVfinder" rel="nofollow">https://github.com/cauyrd/SVfinder</a></p>]]></description>
	<dc:creator>Robert M Willioms</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36644/tacoa-taxonomic-classification-of-environmental-genomic-fragments-using-a-kernelized-nearest-neighbor-approach</guid>
	<pubDate>Tue, 15 May 2018 09:52:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36644/tacoa-taxonomic-classification-of-environmental-genomic-fragments-using-a-kernelized-nearest-neighbor-approach</link>
	<title><![CDATA[TACOA: Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach]]></title>
	<description><![CDATA[TACOA is a software that can accurately predict the taxonomic origin of genomic fragments from metagenomic data sets by combining the advantages of the k -NN approach with a smoothing kernel function. 

TACOA can be easily installed and run on a desktop computer, therefore allowing researchers to locally analyze their metagenomic sequence data or integrate it into their pipelines.<p>Address of the bookmark: <a href="http://www.cebitec.uni-bielefeld.de/index.php/2-uncategorised/99-tacoa" rel="nofollow">http://www.cebitec.uni-bielefeld.de/index.php/2-uncategorised/99-tacoa</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37788/s-plot2-creates-an-interactive-two-dimensional-heatmap-of-sequences</guid>
	<pubDate>Fri, 28 Sep 2018 05:36:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37788/s-plot2-creates-an-interactive-two-dimensional-heatmap-of-sequences</link>
	<title><![CDATA[S-plot2: creates an interactive, two-dimensional heatmap of sequences]]></title>
	<description><![CDATA[<p><span>S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes functionality to extract, analyze, and automate BLAST queries of regions of interest within the heatmap. This facilitates the investigation of quickly evolving coding regions, novel coding regions, and laterally transferred elements.</span></p>
<p><span>http://www.putonti-lab.com/uploads/4/5/3/0/45307835/s-plot2_tutorial.pdf</span></p>
<p><span>http://journals.sagepub.com/doi/pdf/10.1177/1176934318797354</span></p><p>Address of the bookmark: <a href="https://bitbucket.org/lkalesinskas/splot" rel="nofollow">https://bitbucket.org/lkalesinskas/splot</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/38682/bourque-lab</guid>
  <pubDate>Mon, 14 Jan 2019 15:39:25 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bourque Lab]]></title>
  <description><![CDATA[
<p>The goal of the lab is to understand mammalian genomes using comparative genomic and epigenomic analyses. Areas of interest include: the evolution of regulatory sequences, the role of transposable elements in gene regulation and the impact of genome rearrangements in evolution and cancer.</p>

<p>As a computational genomicists our work involves examining billions of DNA base pairs and interpreting how variation impacts basic biology and disease. We develop computational methods and resources for the functional annotation of genomes with a special emphasis on sequencing-based assays (e.g. ChIP-seq, RNA-Seq, exome- and whole-genome sequencing, single-cell analysis).</p>

<p>http://www.computationalgenomics.ca</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44292/gget</guid>
	<pubDate>Sat, 01 Apr 2023 09:42:07 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44292/gget</link>
	<title><![CDATA[gget]]></title>
	<description><![CDATA[<p><code>gget</code><span>&nbsp;is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases.&nbsp;</span><code>gget</code><span>&nbsp;consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying in a single line of code.</span></p>
<p><span><img src="https://github.com/pachterlab/gget/raw/main/figures/gget_overview.png?raw=true" alt="image" style="border: 0px;"></span></p><p>Address of the bookmark: <a href="https://github.com/pachterlab/gget" rel="nofollow">https://github.com/pachterlab/gget</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44659/figeno-tool-for-plotting-sequencing-data-along-genomic-coordinates</guid>
	<pubDate>Tue, 17 Sep 2024 02:28:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44659/figeno-tool-for-plotting-sequencing-data-along-genomic-coordinates</link>
	<title><![CDATA[Figeno: Tool for plotting sequencing data along genomic coordinates.]]></title>
	<description><![CDATA[<p><span>Tool for plotting sequencing data along genomic coordinates.</span></p>
<div>
<pre><code>FIGENO is a
  FIGure
    GENerator
for GENOmics</code></pre>
</div>
<p dir="auto">With figeno, you can plot various types of sequencing data along genomic coordinates. Video overview:&nbsp;<a href="https://www.youtube.com/watch?v=h1cBeXoSYTA">https://www.youtube.com/watch?v=h1cBeXoSYTA</a>.</p>
<p dir="auto"><a href="https://github.com/CompEpigen/figeno/blob/main/docs/content/images/figeno.png" target="_blank"><img src="https://github.com/CompEpigen/figeno/raw/main/docs/content/images/figeno.png" alt="figeno" style="border: 0px;"></a></p><p>Address of the bookmark: <a href="https://github.com/CompEpigen/figeno" rel="nofollow">https://github.com/CompEpigen/figeno</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35108/mobyle-a-new-full-web-bioinformatics-framework</guid>
	<pubDate>Sun, 07 Jan 2018 19:33:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35108/mobyle-a-new-full-web-bioinformatics-framework</link>
	<title><![CDATA[Mobyle: a new full web bioinformatics framework]]></title>
	<description><![CDATA[<p><span>Mobyle, to provide a flexible and usable Web environment for defining and running bioinformatics analyses. It embeds simple yet powerful data management features that allow the user to reproduce analyses and to combine tools using a hierarchical typing system. Mobyle offers invocation of services distributed over remote Mobyle servers, thus enabling a federated network of curated bioinformatics portals without the user having to learn complex concepts or to install sophisticated software.</span></p><p>Address of the bookmark: <a href="https://academic.oup.com/bioinformatics/article/25/22/3005/179064" rel="nofollow">https://academic.oup.com/bioinformatics/article/25/22/3005/179064</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37800/heatmapper-web-enabled-heat-mapping-for-all</guid>
	<pubDate>Mon, 01 Oct 2018 08:34:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37800/heatmapper-web-enabled-heat-mapping-for-all</link>
	<title><![CDATA[Heatmapper: web-enabled heat mapping for all]]></title>
	<description><![CDATA[<p><span>Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that allows users to easily create a wide variety of heat maps for many different data types and applications. Heatmapper allows users to generate, cluster and visualize: </span></p>
<p><span>1)&nbsp;</span><span>expression-based heat maps</span><span>&nbsp;from transcriptomic, proteomic and metabolomic experiments; 2)&nbsp;</span><span>pairwise distance maps</span><span>; </span></p>
<p><span>3)&nbsp;</span><span>correlation maps</span><span>; </span></p>
<p><span>4)&nbsp;</span><span>image overlay heat maps</span><span>; </span></p>
<p><span>5)&nbsp;</span><span>latitude and longitude heat maps</span><span>&nbsp;and </span></p>
<p><span>6)&nbsp;</span><span>geopolitical (choropleth) heat maps</span><span>. </span></p>
<p><span>Heatmapper offers a number of simple and intuitive customization options for easy adjustments to each heat map&rsquo;s appearance and plotting parameters. Heatmapper also allows users to interactively explore their numeric data values by hovering their cursor over each heat map, or by using a searchable/sortable data table view.</span></p>
<p><span>Ref&nbsp;https://www.ncbi.nlm.nih.gov/pubmed/27190236</span></p><p>Address of the bookmark: <a href="http://www2.heatmapper.ca/" rel="nofollow">http://www2.heatmapper.ca/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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