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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/39606?offset=950</link>
	<atom:link href="https://bioinformaticsonline.com/related/39606?offset=950" rel="self" type="application/rss+xml" />
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10748/bioinformatics-phd-at-cuk-kerala</guid>
  <pubDate>Sat, 10 May 2014 20:21:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics PhD at CUK Kerala]]></title>
  <description><![CDATA[
<p>Applications are invited from highly motivated students (UGC-CSIR-JRF) with a background in Genomics/ Biotechnology/ Molecular Microbiology/ Biochemistry and Bioinformatics to pursue research leading to Ph.D. in the following areas;</p>

<p>    1. Cancer Genomics</p>

<p>    2. Microbial Genetics and Metagenomics</p>

<p>    3. Human Infective Diseases</p>

<p>    4. Computational Drug Design</p>

<p>Interested candidates may apply to Dr. Ranjith N. Kumavath, Assistant Professor &amp; Head, Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Padannakad (PO), Nileshwar, Kasaragod-671328,Kerala. Email: RNkumavath@gmail.com</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/10925/a-brief-bioinformatics-tutorial</guid>
	<pubDate>Wed, 21 May 2014 12:50:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/10925/a-brief-bioinformatics-tutorial</link>
	<title><![CDATA[A Brief Bioinformatics Tutorial]]></title>
	<description><![CDATA[<p>This is about how to use a computer to find what is known about a gene of interest and also how to get new insights about it.</p>
<p>The tutorial is divided in three main parts:</p>
<ul>
<li>In the <strong>Sequence </strong>part, you will see how to look efficiently for a particular protein sequence, how to blast it against the database of your choice to find homologues, how to perform a multiple alignment of the homologues you've selected and how to edit this alignment.</li>
<li>The <strong>Structure </strong>part is about molecular visualization, homology modeling and structural domain prediction.</li>
<li>In the <strong>Function </strong>part, you will be introduced to you 3 useful servers to investigate the function of a protein. i.e. finding interactors, co-expressed genes, see a phylogenetic profile, easily access papers citing your gene etc ...</li>
</ul>
<p>During all the three parts, we will use the <em>S. cerevisiae </em>VPS36 protein as an example.</p><p>Address of the bookmark: <a href="http://www.mrc-lmb.cam.ac.uk/rlw/text/bioinfo_tuto/introduction.html" rel="nofollow">http://www.mrc-lmb.cam.ac.uk/rlw/text/bioinfo_tuto/introduction.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/34326/list-of-research-institutes-in-india-biological-sciences-biotechnology</guid>
	<pubDate>Tue, 14 Nov 2017 09:46:16 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34326/list-of-research-institutes-in-india-biological-sciences-biotechnology</link>
	<title><![CDATA[List of Research Institutes in India (Biological Sciences/ Biotechnology)]]></title>
	<description><![CDATA[<p>A laboratory (normally lab) is a facility that provides controlled conditions in which scientific or technological research, experiments, and measurement may be performed.</p><p>The aims of bio/medical research are also broad, including:<br />&bull; Understanding mechanism of disease<br />&bull; Understanding the impact of genetic and external factors on human health<br />&bull; Designing and evaluating new therapeutic interventions<br />&bull; Health genomics</p><p>List of Research Institutes in India (Biological Sciences)</p><p>BANGALORE <br />Ashoka Trust for Ecology and the Environment<br />Royal Enclave, Srirampura, Jakkur Post, Bangalore-560064<br />Email: info@atree.org<br />Web: www.atree.org/<br />Research: ATREE deals with issues relating to the environmental, social and economic dimensions, and implications of, biological resources and natural ecosystems</p><p>Indian Institute of Science<br />Indian Institute of Science, Bangalore 560 012, Karnataka<br />Email:regr@admin.iisc.ernet.in<br />Web: www.iisc.ernet.in/<br />Research Areas: Biochemistry, ecological sciences, microbiology &amp; cell biology, molecular biophysics, molecular reproduction, development &amp; genetics.</p><p><br />Jawaharlal Nehru Centre for Advanced Scientific Research<br />Jakkur, Bangalore 560 064, Karnataka<br />Email: academic@jncasr.ac.in<br />Web: www.jncasr.ac.in/<br />Research Areas: Evolutionary and organismal biology, molecular biology and genetics.</p><p><br />National Centre for Biological Science<br />GKVK, Bellary Road,<br />Email: dean@ncbs.res.in<br />Web: www.ncbs.res.in<br />Research Areas: The research interests of the faculty range from single molecules to systems biology.</p><p><br />National Institute of Mental Health and Neurosciences<br />Bangalore 560029, Karnataka<br />Email: info@nimhans.kar.nic.in<br />Web: nimhans.kar.nic.in/<br />Research Areas: Biophysics, biostatistics, clinical psychology, epidemiology, human genetics, mental health education, neuroanaesthesia, neurochemistry, neuro imaging and interventional radiology, neurology, neuromicrobiology, neuropathology, neurophysiology, neurosurgery, neurovirology.</p><p><br />Stem Cell Institute<br />NCBS, GKVK, Bellary Road,<br />Email: ramas@ncbs.res.in<br />Web: underconstruction</p><p><br />University of Agricultural Sciences<br />GKVK, Bangalore 5600065, Karnataka<br />Email: root@uas.kar.nic.in<br />Web: uasbng.kar.nic.in/Default.htm<br />BARODA</p><p>Maharaja Sayajirao University of Baroda<br />Fatehgunj, Vadodara 390 002, Gujarat<br />Web: msubaroda.ac.in/</p><p>BHOPAL <br />Indian Institute of Science Education and Research&ndash;Bhopal<br />Govindpura, Bhopal - 23<br />E-mail: director@iiserbhopal.ac.in<br />Web: www.iiserbhopal.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br />BHUBANESHWAR <br />Institute of Life Sciences<br />Bhubaneswar 751 023, Orissa<br />Web: www.ils.res.in<br />Research Areas: Cancer, malaria, age diseases, stress biology, ecophysiology, plant molecular physiology, filariasis, tuberculosis, bio-perspecitve, agricultural biotechnology, bio-informatics.</p><p><br />National Institute of Science Education and Research &ndash; Bhubaneshwar<br />Institute of Physics Campus, Bhubaneswar, Orissa - 751 005,<br />e-mail : director@niser.ac.in<br />Web: www.niser.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics.</p><p><br />Regional Research Laboratory<br />Bhubaneswar 751 013, Orissa<br />Email: root@csrrlbhu.ren.nic.in<br />Web: www.icast.org.in/csir/rrl_bhu.html<br />Research Areas: Survey &amp; cultivation of aromatic, medicinal and other economic plants.</p><p><br />Utkal University<br />Vani Vihar, Bhubaneswar 751 004, Orissa<br />Web: www.utkaluniversity.org/<br />CHANDIGARH <br />Indian Institute of Science Education and Research &ndash;Mohali<br />Chandigarh<br />Email: webmaster@iisermohali.ac.in<br />Web: www.iisermohali.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology,<br />chemistry, math and physics</p><p><br />Institute of Microbial Technology<br />Sector 39&ndash;A, Chandigarh 160 036<br />Email: raghava@imtech.res.in<br />Web: www.imtech.res.in/<br />Research Areas: Molecular biology and microbial genetics,<br />animal cell/tissue culture and protein engineering.</p><p><br />Panjab University<br />Chandigarh 160 014<br />Email: pulib@puchd.ren.nic.in<br />Web: www.puchd.ac.in/</p><p><br />Postgraduate institute of Medical Education and Research<br />Sector-12, Chandigarh, 160 012<br />Email: pgimer@chd.nic.in<br />Web: pgimer.nic.in/<br />Research Areas: Obstetrics and gynaecology, psychiatry,<br />biochemistry, haematology, clinical parasitology etc.<br />CHENNAI <br />Indian Institute of Technology Madras<br />Chennai 600 036, Tamil Nadu<br />Email: tppro@acer.iitm.ernet.in<br />Web: www.iitm.ac.in<br />Research Areas: Engineering: Biotechnology.</p><p><br />University of Madras<br />University Centenary Building, Chepauk, Chennai 600 005, Tamil Nadu<br />Email: webmaster@unom.ac.in<br />Web: www.unom.ac.in/ <br />DARJEELING <br />University of North Bengal<br />Raja Rammohunpur, Darjeeling 734 430, West Bengal<br />Email:(Registrar): regnbu@dte.vsnl.net.in<br />Web: www.nbu.ac.in/<br />DELHI <br />All India Institute of Medical Sciences<br />New Delhi<br />Email: webmastr@aiims.ac.in<br />Web: www.aiims.ac.in/</p><p><br />Institute of Genomics and Integrative Biology<br />Delhi University Campus, Mall Road, Delhi 110 007<br />Email: info@igib.res.in<br />Web: www.igib.res.in/<br />Research Areas: Allergy and immunology, diagnostics, genetic engineering, bio-organics and high-tech reagents.</p><p><br />Indian Institute of Technology Delhi<br />Hauz Khas, New Delhi 110 016<br />Email: malhotra@admin.iitd.ernet.in<br />Web: www.iitd.ac.in<br />Research Areas: Engineering: Biochemical engineering &amp; biotechnology.<br />International Centre for Genetic Engineering and Biotechnology</p><p><br />ICGEB Campus, Aruna Asaf Ali Marg,<br />New Delhi 110 067<br />Web: www.icgeb.trieste.it/<br />Research Areas: Mammalian biology:<br />Virology immunology, malaria,<br />recombinant gene products,<br />Plant molecular biology, plant transformation,<br />insect resistance, plant resistance.</p><p><br />Jawaharlal Nehru University<br />New Delhi<br />Email: webmaster@mail.jnu.ac.in<br />Web: www.jnu.ac.in</p><p><br />National Centre for Plant Genome Research<br />JNU Campus, New Delhi<br />Email: tapas_s3@yahoo.co.in<br />Web: ncpgr.nic.in/<br />Research Areas: Nutritional, structural, and functional genomics of various plant systems.</p><p><br />National Institute of Immunology<br />Aruna Asaf Ali Marg, New Delhi 110 067<br />Web: www.nii.res.in/<br />Research Areas: Gene regulation, immunity &amp; infection, molecular design, reproduction &amp; development.</p><p><br />TERI University<br />Vasant Kunj, New Delhi - 110 070 / India<br />E-mail: registrar@teri.res.in<br />Web: www.teriuniversity.ac.in<br />Research Areas: Environmental Studies, Natural Resources Management, Climate Science and Policy, Plant Biotechnology</p><p><br />University of Delhi<br />University Road, Delhi 110 007<br />Email: webmaster@du.ac.in<br />Web: www.du.ac.in/<br />GOA <br />National Centre for Antarctic and Ocean Research<br />Headland Sada, Vasco-da-Gama 403 804, Goa<br />Email: info@ncaor.org<br />Research Areas: Co&ndash;ordination and implementation of the Indian Antarctic Programme.<br /> <br /> <br />National Institute of Oceanography<br />Dona Paula 403 004, Goa<br />Email: webmaster@darya.nio.org<br />Web: www.nio.org/<br />Research Areas: International geosphere-bio-sphere programme, marine biotechnology.<br />GURGAON <br />National Brain Research Centre<br />Near NSG Campus, Nainwal Mode, Manesar, Gurgaon, Haryana<br />Email: info@nbrc.ac.in<br />Web: www.nbrc.ac.in/<br />Research Areas: Brain research.<br />GUWAHATI <br />Indian Institute of Technology Guwahati<br />North Guwahati, Guwahati 781 039, Assam<br />Email: mcb@iitg.ernet.in<br />Web: www.iitg.ernet.in<br />Research Areas: Engineering: Biotechnology.<br /> <br /> <br />Gauhati University<br />Gopinath Bordoloi Nagar, Guwahati 781 014, Assam<br />Web: http://www.gauhati.ac.in/.<br />HYDERABAD <br />Centre for Cellular &amp; Molecular Biology<br />Uppal Road, Hyderabad 500 007, Andhra Pradesh<br />Email: (Director): lalji@ccmb.res.in<br />Web: www.ccmb.res.in/<br />Research Areas: Biophysics &amp; biochemistry, molecular biology, genetics &amp; evolution, biomedicines &amp; biotechnology.<br /> <br /> <br />Centre for DNA Fingerprinting and Diagnostics<br />CDFD, Bldg. 7, Gruhakalpa, 5-4-399/B, Nampally, Hyderabad - 500 001.<br />Email: director@cdfd.org.in<br />Web: www.cdfd.org.in/<br />Research Areas: Automated genome analysis, bacterial genetics, cancer biology, cell biology &amp; gene expression, computational biology, computational &amp; functional genomics, immunology, mammalian genetics, molecular genetics, molecular oncology, molecular virology, structural biology, transcription, developmental neuroscience and drosophila genetics.<br /> <br /> <br />Indian Institute of Chemical Technology<br />Uppal Road, Hyderabad 500 007, Andhra Pradesh<br />Email: kvr@iict.ap.nic.in, sampath@iict.ap.nic.in<br />Web: www.iictindia.org/<br />Research Areas: Pesticides, drugs, organic intermediates and fine chemicals.<br /> <br /> <br />LV Prasad Eye Intstitute<br />Hyderabad, Andhra Pradesh, India<br />Email: communications@lvpei.org<br />Web: www.lvpei.org/<br />LVPEI is a World Health Organization Collaborating Center for Prevention of Blindness. Equipped with cutting-edge technology and distinguished professionals in the field of Eye care<br /> <br /> <br />University of Hyderabad<br />P.O. Central University, Gachibowli, Hyderabad 500 046, Andhra Pradesh<br />Email: trctcs@uohyd.ernet.in<br />Web: www.uohyd.ernet.in/<br />IMPHAL <br />Institute of Bioresources and Sustainable Development<br />Takyelpat, Imphal 795 001, Manipur<br />Email: ibsd_imp@sancharnet.in, ibsd-imphal@man.nic.in<br />Web: ibsd-imphal.nic.in/<br />Research Areas: Conservation of biodiversity and sustainable utilisation of biodiversity.<br />ITANAGAR <br />North Eastern Regional Institute of Science and Technology<br />Itanagar, Nirjuli, Papumpare 791 109, Arunachal Pradesh<br />Email: dir@nerist.ernet.in<br />Web: www.nerist.ac.in/<br />Research Areas: Agricultural engineering, forestry.<br />JAIPUR <br />University of Rajasthan<br />Jaipur 320 004, Rajasthan<br />Email: info@uniraj.org<br />Web: www.uniraj.org/<br />JAMMU and KASHMIR <br />Regional Research Laboratory<br />Canal Road, Jammu 130 001, Jammu &amp; Kashmir<br />Email: (Director): qazi_gn@yahoo.com, root@csrrljm.ren.nic.in<br />Web: www.rrljammu.org/<br />Research Areas: Natural products &amp; organic chemistry, improvement &amp; cultivation of medicinal and aromatic plants, post harvest technology and applied microbiology &amp; mutation genetics.<br /> <br />University of Jammu<br />Jammu 180 006, Jammu &amp; Kashmir<br />Web: www.jammuuniversity.org/<br /> <br />University of Kashmir<br />Hazratbal,Srinagar-190006,Jammu and Kashmir<br />Email: info@kashmiruniversity.net<br />Web: http://www.kashmiruniversity.net/<br /> <br />Sher-i-Kashmir Institute of Medical Science (SKIMS)<br />Srinagar, Jammu and Kashmir<br />Email: skimsweb@gmail.com<br />Web: http://www.skims.ac.in/<br /> <br />Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST)<br />Shalimar Campus, Srinagar - 191121 Jammu and Kashmir<br />Email: skuastkashmir@gmail.com<br />Web: http://www.skuastkashmir.ac.in/<br />Research Areas: Agricultural Sciences, fisheries and veterinary sciences.<br />JORHAT <br />Regional Research Laboratory<br />Jorhat 785 006, Assam<br />Email: drrljt@csir.res.in, inform@csir.res.in<br />Web: jorhat.nic.in/rrl.htm<br />Research Areas: Agrochemicals, drugs and drug intermediates, organic chemistry, biochemistry.<br />KANPUR <br />Indian Institute of Technology Kanpur<br />GT Road, Kalyanpur, Kanpur 208 016, Uttar Pradesh<br />Email: infocell@iitk.ac.in<br />Web: www.iitk.ac.in/<br />Research Areas: Engineering: Biological sciences &amp; bioengineering.<br />KHARAGPUR <br />Indian Institute of Technology Kharagpur<br />Kharagpur 721 302, West Bengal<br />Email: (PRO): ashok@hijli.iitkgp.ernet.in<br />Web: www.iitkgp.ernet.in/<br />Research Areas: Engineering: Biotechnology.<br />KOCHI <br />Cochin University of Science and Technology<br />South Kalamessery, Kochi 682 022, Kerala<br />Email: webmaster@cusat.ac.in<br />Web: www.cusat.ac.in/.<br />KOLKATA <br />Bose Institute<br />93/1, Acharya Prafulla Chandra Road, Kolkata 700 009, West Bengal<br />Email: sidroy@bic.boseinst.ernet.in<br />Web: www.boseinstitute.org/<br />Research Areas: Bioinformatics &amp; computational biology, structure and functional dynamics of biomolecules, drug modeling, molecular genetics of microbes, transgenic plants etc.<br /> <br /> <br />Indian Institute of Chemical Biology<br />4, Raja S.C. Mullick Road, Jadavpur, Kolkata 700 032, West Bengal<br />Email: (Director): director@iicb.res.in<br />Web: www.iicb.res.in/<br />Research Areas: Natural products of medicinal, biological and industrial value, immunoassay techniques, tissue-targeted drug-delivery system.<br /> <br /> <br />Indian Institute of Science Education and Research &ndash;Kolkata<br />Mohanpur, Nadia, West Bengal<br />Web: www.iiserkol.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Indian Statistical Institute, Kolkata<br />203 Barrackpore Trunk Road, Kolkata 700 108, West Bengal<br />Email: postmaster@isical.ac.in<br />Web: www.isical.ac.in/<br />Research Areas: Agricultural and ecological research, biological anthropology, human genetics.<br /> <br /> <br />Jadavpur University<br />188 Raja S.C. Mallik Road, Kolkata 700 032, West Bengal<br />Email: registrar@jdvu.ac.in<br />Web: www.jadavpur.edu/<br /> <br /> <br />University of Calcutta<br />Kolkata 700 009, West Bengal<br />Web: www.kolkata.org/cu/<br />KURUKSHETRA <br />Kurukshetra University<br />Kurukshetra 136 119, Haryana<br />Email: jskadian@rediffmail.com<br />Web: kuk.ernet.in/<br />LUCKNOW <br />Birbal Sahni Institute of Palaeobotany<br />53 University Road, Lucknow, Uttar Pradesh<br />Email: director@bsip.res.in<br />Web: www.bsip-india.org/index.htm<br />Research Areas: Botanical palaeobotany: Morphotaxonomy, palaeoecology, palaeogeography, phylogeny and evolution.<br /> <br /> <br />Central Drug Research Institute<br />Chattar Manzil Palace, Post Box No. 173, Lucknow 226 001, Uttar Pradesh<br />Email: info@cdriindia.org<br />Web: www.cdriindia.org/<br />Research Areas: Development of contraceptives, new drugs for tropical diseases (malaria, filariasis, leishmaniasis), cardio-vascular and central nervous system disorders.<br /> <br /> <br />Indian Institute of Science Education and Research &ndash;Kolkata<br />Mohanpur, Nadia, West Bengal<br />Web: www.iiserkol.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Indian Statistical Institute, Kolkata<br />203 Barrackpore Trunk Road, Kolkata 700 108, West Bengal<br />Email: postmaster@isical.ac.in<br />Web: www.isical.ac.in/<br />Research Areas: Agricultural and ecological research, biological anthropology, human genetics.<br /> <br /> <br />Central Institute of Medicinal and Aromatic Plants<br />Lucknow 226 015, Uttar Pradesh<br />Email: director@cimap.res.in<br />Web: www.cimap.res.in/<br />Research Areas: Agrotechnologies for medicinal and aromatic plants, phytochemistry, plant physiology and biochemistry, pathology, genetics, entomology and pharmacognosy.<br /> <br /> <br />Industrial Toxicology Research Centre<br />Mahatma Gandhi Marg, P.O. Box No. 80, Lucknow 226 001, Uttar Pradesh<br />Email: info@itrcindia.org<br />Web: www.itrcindia.org/<br />Research Areas: Neurotoxicology, environmental health, immunotoxicology and environmental biotechnology.<br /> <br /> <br />National Botanical Research Institute<br />Rana Pratap Marg, Lucknow 226 001, Uttar Pradesh<br />Email: p.pushpangadan@nbri.res.in<br />Web: www.nbri-lko.org/<br />Research Areas: Plant biotechnology, environmental sciences, taxonomy and ethnobotany, plant molecular biology.<br />MUMBAI <br />Advanced Centre for Treatment, Research and Education in Cancer (ACTREC)<br />Tata Memorial Centre, Navi Mumbai - 410 210<br />Web: www.actrec.gov.in/<br />Research Areas: Research investigations currently focus on molecular mechanisms of cancer, drug development and emerging therapies for treatment and prevention of cancer.<br /> <br /> <br />Bhabha Atomic Research Centre<br />Trombay, Mumbai 400 085, Maharashtra<br />Email: webmaster@magnum.barc.ernet.in<br />Web: www.barc.ernet.in/<br />Research Areas: Chemical and life sciences, nuclear agriculture.<br /> <br /> <br />Bombay Natural History Society<br />Hornbill House, Shaheed Bhagat Singh Road, Mumbai 400 023, Maharashtra<br />Email: bnhs@bom4.vsnl.net.in<br />Web: www.bnhs.org/<br /> <br /> <br />Indian Institute of Technology Bombay<br />Powai, Mumbai 400 076, Maharashtra<br />Email: registrar@iitb.ac.in<br />Web: www.iitb.ac.in/<br />Research Areas: Earth sciences; Science: Biology, chemistry, mathematics, physics.<br /> <br /> <br />Tata Institute of Fundamental Research<br />Homi Bhabha Road, Navy Nagar, Colaba, Mumbai 400 005.<br />Web: www.tifr.res.in/<br />Department of Biological Sciences: www.tifr.res.in/~dbs<br />Research Areas: TIFR is a multidisciplinary research organisation working in the area of Natural Sciences (Biology, Chemistry, and Physics), Mathematics and Computer Science.<br /> <br /> <br />University of Mumbai<br />Vidyanagari, Kalina, Santa Cruz (W), Mumbai 400 098, Maharashtra<br />Web: www.mu.ac.in/<br /> <br /> <br />National Botanical Research Institute<br />Rana Pratap Marg, Lucknow 226 001, Uttar Pradesh<br />Email: p.pushpangadan@nbri.res.in<br />Web: www.nbri-lko.org/<br />Research Areas: Plant biotechnology, environmental sciences, taxonomy and ethnobotany, plant molecular biology.<br />NAGPUR <br />National Environmental Engineering Research Institute<br />Nehru Marg, Nagpur 440 020, Maharashtra<br />Email: dirneeri@nagpur.dot.net.in<br />Web: www.neeri.nic.in/<br />Research Areas: Environmental biotechnology.<br />PUNE <br />Agharkar Research Institute<br />G.G. Agarkar Road, Pune 411 004, Maharashtra<br />Web: www.aripune.org/<br />Research Areas: Animal sciences, microbial sciences, plant sciences.<br /> <br /> <br />Indian Institute of Science Education and Research&ndash;Pune<br />Email: director@iiserpune.ac.in<br />Web: www.iiserpune.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics.<br /> <br /> <br />National Chemical Laboratory<br />Dr. Homi Bhabha Road, Pune 411 008, Maharashtra<br />Email: director@ems.ncl.res.in<br />Web: www.ncl-india.org/<br />Research Areas: biotechnology, biochemistry.&gt;<br /> <br /> <br />National Centre for Cell Sciences<br />NCCS Complex, Ganeshkhind, Pune 411 007, Maharashtra<br />Email: infonccs@giaspn01.vsnl.net.in<br />Web: www.nccs.res.in/<br />Research Areas: Cell biology, molecular biology, immunology, parasitology, hybridoma technology, tissue banking &amp; tissue engineering, regenerative biology, virology (HIV), cancer biology, diabetes, cryobiology transplantation, gene therapy.<br /> <br /> <br />University of Pune<br />Ganeshkhind Road, Pune 411 007, Maharashtra Telephone: 020-5601305<br />Email: Registrar): regis@unipune.ernet.in<br />Web: www.unipune.ernet.in/<br />PALAMPUR <br />Institute of Himalayan Bioresource Technology<br />Post Box No. 6, Palampur 176 061, Himachal Pradesh<br />Email: root@csihbt.ren.nic.in, director@ihbt.csir.res.in<br />Web: www.icast.org.in/csir/ihbt.html<br />Research Areas: Floriculture, tea sciences, biotechnology and natural plant products.<br />PATIALA <br />Punjabi University<br />Patiala 147 002, Punjab<br />Email: ucc@pbi.ac.in<br />Web: www.universitypunjabi.org/<br />PILANI <br />Birla Institute of Technology and Science<br />Vidhya Vihar Campus, Pilani, 333 031, Rajasthan<br />Email: mmsanand@bits-pilani.ac.in<br />Web: www.bits-pilani.ac.in/<br />ROORKEE <br />Indian Institute of Technology Roorkee<br />Roorkee 247 667, Uttaranchal<br />Email: (Registrar): regis@iitr.ernet.in<br />Web: www.iitr.ernet.in/<br />Research Areas: Engineering: Biotechnology.<br />SHANTINIKETAN <br />Visva-Bharati University<br />Santiniketan, Birbhum 731 235, West Bengal<br />Email: Root@vbharat.ernet.in<br />Web: www.visva-bharati.ac.in/<br />SHILLONG <br />North-Eastern Hill University<br />Umshing, Shillong 793 022, Meghalaya<br />Email: admin@nehu.ac.in<br />Web: www.nehu.ac.in/<br />SILCHAR <br />Assam University<br />P.O. Box 63, Silchar 788 011, Assam<br />Email: auliba@sancharnet.in, asokesen@sancharnet.in<br />Web: assamuniversity.nic.in/<br />TRIVANDUM <br />Indian Institute of Science Education and Research&ndash;Trivandum<br />Trivandrum, Kerala,India.<br />Web: www.iisertvm.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Rajiv Gandhi Centre for Biotechnology<br />Thycaud P.O., Thiruvananthapuram 695 , Kerala<br />Email: info@rgcb.res.in<br />Web: rgcb.res.in/<br />Research Areas: Disease biology and molecular medicine, Plant biotechnology<br /> <br /> <br />Regional Research Laboratory<br />Industrial Estate P.O., Pappanamcode, Thiruvananthapuram 695 019, Kerala<br />Email: root@csrrltrd.ren.nic.in<br />Web: w3rrlt.csir.res.in/<br />Research Areas: Chemistry of natural products, agroprocessing, photochemical systems including solar energy conversion, analysis of pollutants and waste-water technology.<br /> <br />VARANASI <br />Banaras Hindu University<br />Varanasi 221 005, Uttar Pradesh<br />Email: webmaster@bhu.ac.in<br />Web: www.bhu.ac.in/index.html<br /> <br />Rajiv Gandhi Centre for Biotechnology<br />Thycaud P.O., Thiruvananthapuram 695 , Kerala<br />Email: info@rgcb.res.in<br />Web: rgcb.res.in/<br />Research Areas: Disease biology and molecular medicine, Plant biotechnology<br /> <br /> <br />Indian Council for Agricultural Research<br />Main Web site: www.icar.org.in/<br />Research Institutes under ICAR: www.icar.org.in/icar15.html<br /> <br /> <br />CSIR Laboratories<br />Main CSIR website&ndash;www.csir.res.in/</p><p>-------------------------------</p><p>Department of Atomic Energy<br />Main CSIR website&ndash;www.barc.ernet.in/<br /> <br /> <br />Department of Biotechnology<br />Main CSIR website&ndash;dbtindia.nic.in/index.asp</p><p>&nbsp;</p><p>Dept. of Science &amp; Technology<br />Main Website: Main Website: www.dst.gov.in/<br /> <br /> <br />Indian Council for Medical Research<br />Main Web site: icmr.nic.in/<br />Research Institutes under ICMR: icmr.nic.in/institute.htm#Permanent%20Institutes/Centres</p><p>Ministry of Environment and Forest<br />Main Web site: envfor.nic.in/<br />Research Institutes under ICAR: cyberjournalist.org.in/linksr.html</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/41455/coronavirus-covid-%E2%80%9019-testing-sites-in-india</guid>
	<pubDate>Mon, 16 Mar 2020 16:13:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/41455/coronavirus-covid-%E2%80%9019-testing-sites-in-india</link>
	<title><![CDATA[Coronavirus COVID ‐19 Testing Sites In India]]></title>
	<description><![CDATA[<p>COVID-19 is a new illness that can affect your lungs and airways. It's caused by a virus called coronavirus.</p><h2>Stay at home if you have coronavirus symptoms</h2><p>Stay at home if you have either:</p><ul>
<li>a high temperature &ndash; you feel hot to touch on your chest or back</li>
<li>a new, continuous cough &ndash; this means you've started coughing repeatedly</li>
</ul><h2>DO NOT TAKE</h2><p><em>Ibrufen</em></p><p><em>https://amp.theguardian.com/world/2020/mar/14/anti-inflammatory-drugs-may-aggravate-coronavirus-infection</em></p><h2>How to avoid catching and spreading coronavirus (social distancing)</h2><p>Everyone should do what they can to stop coronavirus spreading.</p><p>It is particularly important for people who:</p><ul>
<li>are 70 or over</li>
<li>have a long-term condition</li>
<li>are pregnant</li>
<li>have a weakened immune system</li>
</ul><p><img src="https://www.hindustantimes.com/rf/image_size_960x540/HT/p2/2020/03/16/Pictures/_c0c377e0-6789-11ea-8a5c-cb364e4c5304.png" alt="image" width="960" height="543" style="border: 0px; border: 0px;"></p><p><strong>Below are the 52 Coronavirus COVID-19 Testing sites/locations in India.</strong></p><p>State:&nbsp;Andhra Pradesh&nbsp; &nbsp; &nbsp; &nbsp;</p><ol>
<li>Sri Venkateswara Institute of Medical Sciences, Tirupati</li>
<li>Andhra Medical College, Visakhapatnam, Andhra Pradesh</li>
<li>GMC, Anantapur, AP</li>
</ol><p>State:&nbsp;Andaman &amp; Nicobar islands</p><ol>
<li>Regional Medical Research Centre, Port Blair, Andaman, and Nicobar</li>
</ol><p>State:&nbsp;Assam</p><ol>
<li>Gauhati Medical College, Guwahati</li>
<li>&nbsp;Regional Medical Research Center, Dibrugarh</li>
</ol><p>State:&nbsp;Bihar</p><ol>
<li>Rajendra Memorial Research Institute of Medical Sciences, Patna</li>
</ol><p>State: Chandigarh</p><ol>
<li>Post Graduate Institute of Medical Education &amp; Research, Chandigarh</li>
</ol><p>State: Chhattisgarh</p><ol>
<li>All India Institute Medical Sciences, Raipur</li>
</ol><p>Union Territory: Delhi-NCT&nbsp;</p><ol>
<li>All India Institute Medical Sciences, Delhi</li>
<li>National Centre for Disease Control, Delhi</li>
</ol><p>State: Gujarat</p><ol>
<li>BJ Medical College, Ahmedabad</li>
<li>M.P.Shah Government Medical College, Jamnagar</li>
</ol><p>State: Haryana</p><ol>
<li>Pt. B.D. Sharma Post Graduate Inst. of Med. Sciences, Rohtak, Haryana</li>
<li>BPS Govt Medical College, Sonipat</li>
</ol><p>State: Himachal Pradesh</p><ol>
<li>Indira Gandhi Medical College, Shimla, Himachal Pradesh</li>
<li>Dr.Rajendra Prasad Govt. Med. College, Kangra, Tanda, HP</li>
</ol><p>Union Territory: Jammu and Kashmir</p><ol>
<li>Sher‐e‐ Kashmir Institute of Medical Sciences, Srinagar</li>
<li>Government Medical College, Jammu</li>
</ol><p>State: Jharkhand</p><ol>
<li>MGM Medical College, Jamshedpur</li>
</ol><p>State: Karnataka</p><ol>
<li>Bangalore Medical College &amp; Research Institute, Bangalore</li>
<li>National Institute of Virology Field Unit Bangalore</li>
<li>Mysore Medical College &amp; Research Institute, Mysore</li>
<li>Hassan Inst. of Med. Sciences, Hassan, Karnataka</li>
<li>Shimoga Inst. of Med. Sciences, Shivamogga, Karnataka</li>
</ol><p>State: Kerala</p><ol>
<li>National Institute of Virology Field Unit, Kerala</li>
<li>Govt. Medical College, Thiruvananthapuram, Kerala</li>
<li>Govt. Medical College, Kozhikode, Kerala</li>
</ol><p>State: Madhya Pradesh</p><ol>
<li>All India Institute Medical Sciences, Bhopal</li>
<li>National Institute of Research in Tribal Health (NIRTH), Jabalpur</li>
</ol><p>State: Meghalaya</p><ol>
<li>NEIGRI of Health and Medical Sciences, Shillong, Meghalaya</li>
</ol><p>State: Maharashtra</p><ol>
<li>Indira Gandhi Government Medical College, Nagpur</li>
<li>Kasturba Hospital for Infectious Diseases, Mumbai</li>
</ol><p>State: Manipur</p><ol>
<li>J N Inst. of Med. Sciences Hospital, Imphal‐East, Manipur</li>
</ol><p>State: Odisha</p><ol>
<li>Regional Medical Research Center, Bhubaneswar</li>
</ol><p>Union Territory: Puducherry</p><ol>
<li>Jawaharlal Institute of Postgraduate Medical Education &amp; Research, Puducherry</li>
</ol><p>State: Punjab</p><ol>
<li>Government Medical College, Patiala, Punjab</li>
<li>Government Medical College, Amritsar</li>
</ol><p>State: Rajasthan</p><ol>
<li>Sawai Man Singh, Jaipur</li>
<li>Dr. S.N Medical College, Jodhpur</li>
<li>Jhalawar Medical College, Jhalawar, Rajasthan</li>
<li>SP Med. College, Bikaner, Rajasthan</li>
</ol><p>State: Tamil Nadu</p><ol>
<li>King&rsquo;s Institute of Preventive Medicine &amp; Research, Chennai</li>
<li>Government Medical College, Theni</li>
</ol><p>State: Tripura</p><ol>
<li>Government Medical College, Agartala</li>
</ol><p>State: Telangana</p><ol>
<li>Gandhi Medical College, Secunderabad</li>
</ol><p>State: Uttar Pradesh</p><ol>
<li>King&rsquo;s George Medical University, Lucknow</li>
<li>Institute of Medical Sciences, Banaras, Hindu University, Varanasi</li>
<li>Jawaharlal Nehru Medical College, Aligarh</li>
</ol><p>State: Uttarakhand</p><ol>
<li>Government Medical College, Haldwani</li>
</ol><p>State: West Bengal</p><ol>
<li>National Institute of Cholera and Enteric Diseases, Kolkata</li>
<li>IPGMER, Kolkata</li>
</ol>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1130/bioinformatics-courses-around-the-world</guid>
	<pubDate>Fri, 19 Jul 2013 02:43:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1130/bioinformatics-courses-around-the-world</link>
	<title><![CDATA[Bioinformatics Courses Around the World]]></title>
	<description><![CDATA[<h2>Bioinformatics Courses around the world</h2><p style="text-align: justify;"><br />Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are:</p><div style="text-align: justify;"><ol>
<li>To show the extent of growth of this new discipline</li>
<li>To provide a resource for students, and academics and</li>
<li>To access notes on the subject to allow some brief comparisons between courses.<br /><br /></li>
</ol></div><p style="text-align: justify;">The graduate courses outlined in the table mainly exist as a coursework component of an MSc or PhD degree. Of course, many institutions will also have pure research programs in Bioinformatics at the Hons, MSc, or PhD level and will not have a 'coursework component'. These research programs may not always reflect the main research program of the institution since the research depends upon the interests of a particular individual or small team within that institution. It is difficult to track these individual research programs. Consequently, we have not included all institutions with a bioinformatics research project. Bioinformatics is an interdisciplinary subject and this is reflected in the fact that the courses are offered by departments or schools as diverse as: computer science, biochemistry, molecular biology, microbiology, engineering, and mathematics. Similarly, bioinformatics may also be known by other names such as: computational biology, biocomputing, molecular informatics, computational molecular biology, biological information theory, molecular phylogenetics, and molecular bioinformatics.</p><p style="text-align: justify;"><strong>Bioinformatics University Courses</strong></p><p style="text-align: justify;"><strong>US<a name="us" id="us"></a></strong></p><div style="text-align: justify;"><ul>
<li><a href="http://scbmb.bcm.tmc.edu/">Baylor College of Medicine, USA&nbsp;</a>&nbsp;Ph.D. in structural and computational biology and molecular biophysics</li>
<li><a href="http://bioinfo.bu.edu/">Boston University, USA&nbsp;</a>&nbsp;M.S. and Ph.D. program in bioinformatics</li>
<li><a href="http://www.cmu.edu/mcs/Merck/">Carnegie Mellon, USA&nbsp;</a>&nbsp; B.S., M.S. and Ph.D. Merck Computational Biology and Chemistry Program</li>
<li><a href="http://www.ib3.gmu.edu/programs.html">George Mason University, USA&nbsp;</a>&nbsp;M.S. and Ph.D. in bioinformatics and computational biology</li>
<li><a href="http://www.biology.gatech.edu/gt_bioinfo/">Georgia Institute of Technology, USA&nbsp;</a>&nbsp;M.S. in bioinformatics; Ph.D. in Bioinformatics and Computational Biology</li>
<li><a href="http://informatics.indiana.edu/index.html">Indiana University, USA&nbsp;</a>&nbsp;&nbsp;B.S. and M.S. in informatics&nbsp;</li>
<li><a href="http://www.bcb.iastate.edu/">Iowa State University, USA&nbsp;&nbsp;</a>&nbsp;Ph.D. program in bioinformatics and computational biology</li>
<li><a href="http://www.jhu.edu/~pcb/">Johns Hopkins University, USA&nbsp;</a>&nbsp;Ph.D. program in computational biophysics&nbsp;</li>
<li><a href="http://www-bioc.rice.edu/Keck/keck_info/tnsf.html">Keck Graduate Institute, USA&nbsp;</a>M.S. and Ph.D. in Bioinformatics and Computational Biology</li>
<li><a href="http://brc.mcw.edu/ap/">Marquette University/MCW, USA&nbsp;</a>&nbsp;M.S. in bioinformatics</li>
<li><a href="http://www.njit.edu/old/New/cb/">New Jersey Institute of Technology&nbsp;</a>&nbsp;M.S. and Ph.D. in Computational Biology</li>
<li><a href="http://genomics.ncsu.edu/bioinfo.html">North Carolina State University, USA&nbsp;</a>&nbsp;M.S. and Ph.D. in bioinformatics</li>
<li><a href="http://www.bios.niu.edu/bioinformatics/niubiofor.html">Northern Illinois University, USA&nbsp;</a>M.S. specialization in bioinformatics</li>
<li><a href="http://www.bioinformatics.neu.edu/">Northeastern University, USA&nbsp;</a>M.S. in bioinformatics</li>
<li><a href="http://medicine.osu.edu/Informatics/">OHIO State University, USA&nbsp;</a>&nbsp;Graduate Program in Biomedical Informatics</li>
<li><a href="http://www.rpi.edu/dept/bio/info/bioinformatics.html">Rensselaer Polytechnic Institute, USA&nbsp;</a>&nbsp;B.S. in bioinformatics and molecular biology</li>
<li><a href="http://cmb.rutgers.edu/">Rutgers University, USA&nbsp;</a>&nbsp;Ph.D. in computational molecular biology&nbsp;</li>
<li><a href="http://smi-web.stanford.edu/academics/index.html">Stanford University, USA&nbsp;</a>M.S. and Ph.D. in biomedical informatics</li>
<li><a href="http://shrp.umdnj.edu/umdnj-web/index.htm">University of Medicine &amp; Dentistry of New Jersey, USA&nbsp;</a>M.S. and Ph.D. program in biomedial informatics</li>
<li><a href="http://gsbs.umdnj.edu/bioinformatics/">University of Medicine &amp; Dentistry of New Jersey, USA&nbsp;</a>M.S. and Ph.D. Bioinformatics track</li>
<li><a href="http://www.albany.edu/genomics/grad/">University of Albany, USA&nbsp;</a>Ph.D. program in comparative functional genomics</li>
<li><a href="http://www.igb.uci.edu/education.htm">University of California, Irvine, USA&nbsp;</a>M.S. and Ph.D Informatics in Biology and Medicine</li>
<li><a href="http://www.bioinformatics.ucla.edu/">University of California, Los Angeles, USA&nbsp;</a>M.S. and Ph.D. program in bioinformatics</li>
<li><a href="http://www.cse.ucsc.edu/research/compbio/">University of California, Santa Cruz, USA&nbsp;</a>B.S., M.S. and Ph.D. in Bioinformatics</li>
<li><a href="http://bioinformatics.ucsd.edu/">University of California, San Diego, USA&nbsp;</a>Ph.D. Bioinformatics</li>
<li><a href="http://www.mis.ucsf.edu/">University of California, San Francisco, uSA&nbsp;</a>M.S. and Ph.D. program in biological and medical informatics</li>
<li><a href="http://www.eng.uc.edu/dept_biomed/grad/">University of Cincinnati, USA&nbsp;</a>M.S. and Ph.D. Biomedical Engineering-Bioinformatics track</li>
<li><a href="http://www.uic.edu/depts/bioe/main/bioinformatics.htm">University of Illinois, Chicago, USA&nbsp;</a>M.S. &amp; Ph.D. Bioinformatics</li>
<li><a href="http://www.msci.memphis.edu/~giri/bio.html">University of Memphis, USA&nbsp;</a>M.S. concentration in bioinformatics</li>
<li><a href="http://123genomics.homestead.com/files/courses.html">University of Michigan, Ann Arbor, USA&nbsp;</a>M.S. &amp; Ph.D. Bioinformatics</li>
<li><a href="http://www.binf.umn.edu/">University of Minnesota, USA&nbsp;</a>M.S. &amp; Ph.D. Bioinformatics</li>
<li><a href="http://www.isqa.unomaha.edu/bioinformatics/">University of Nebraska, Omaha, USA&nbsp;</a>M.S. and Ph.D. in Bioinformatics</li>
<li><a href="http://bioinfo.unc.edu/index.html">University of North Carolina, USA&nbsp;</a>M.S. &amp; Ph.D. Bioinformatics and Computational Biology</li>
<li><a href="http://www.cbil.upenn.edu/UPCB/">University of Pennsylvania, USA&nbsp;</a>B.S., M.S. and Ph.D. programs in Computational Biology/Bioinformatics</li>
<li><a href="http://www.cbmi.upmc.edu/training_program/training.htm">University of Pittsburgh, USA&nbsp;</a>M.S. and Ph.D. in bioimedical informatics</li>
<li><a href="http://www.usip.edu/bioinformatics/">University of the Sciences in Philadelphia, USA&nbsp;</a>B.S. in bioinformatics</li>
<li><a href="http://tonga.usip.edu/zauhar/bioinformatics_program.html">University of the Sciences in Philadelphia, USA&nbsp;</a>M.S. in bioinformatics</li>
<li><a href="http://www.usc.edu/dept/LAS/biosci/mcb/graduate_study.shtml">University of Southern California, USA&nbsp;</a>M.S. &amp; Ph.D. in Molecular and Computational Biology</li>
<li><a href="http://www.esb.utexas.edu/molbio/">University of Texas at Austin, USA&nbsp;</a>Ph.D. in Cell and Molecular Biology-Structural Biology and Bioinformatics track</li>
<li><a href="http://www.bioinformatics.utep.edu/">University of Texas at El Paso, USA&nbsp;</a>M.S. in bioinformatics</li>
<li><a href="http://depts.washington.edu/cmolbiol/">University of Washington, Seattle, USA&nbsp;</a>Ph.D. Graduate program in computational molecular biology</li>
<li><a href="http://www.medsch.wisc.edu/biostat/training/bioinfocert.html">University of Wisconsin-Madison, USA&nbsp;</a>Graduate Certificate in Bioinformatics</li>
<li><a href="http://www.uwp.edu/academic/biology/website3/index.html">University of Wisconsin-Parkside, USA&nbsp;</a>B.S. Molecular Biology &amp; Bioinformatics; M.S. Applied Molecular Biology</li>
<li><a href="http://graduate.bioinformatics.vt.edu/">Virgina Tech, USA&nbsp;</a>Graduate program in bioinformatics</li>
<li><a href="http://dbbs.wustl.edu/Programs/computational.html">Washington University St Louis, USA&nbsp;</a>Graduate program in computational biology</li>
<li><em>Centro de Ingenieria Geneticay Biotecnologia&nbsp;</em>, Cuba&nbsp;<br />one week course&nbsp;<br /><a href="http://www.cigb.edu.cu/bioinfo99/">introductionto bioinformatic, June 21-25, 1999</a></li>
<li><em>(Universidad ) Nacional de General San Martin</em>, Argentina&nbsp;<br />Instituto de Investigaciones Biotecnologicas&nbsp;<br /><a href="http://genoma.unsam.edu.ar/bioinformatica2004/">introduccion a la bioinformatica&nbsp;</a></li>
</ul></div><p style="text-align: justify;"><strong>Canada</strong><a name="can" id="can"></a></p><div style="text-align: justify;"><ul>
<li><a href="http://bioinformatics.bcgsc.ca/">Bioinformatics Training Program for Health Research&nbsp;</a>&nbsp;&nbsp;&nbsp;(M.Sc. or Ph.D. in Bioinformatics)</li>
<li><a href="http://bioinformatics.senecac.on.ca/program.html">Seneca College, Toronto&nbsp;</a>&nbsp;&nbsp;&nbsp;(post-graduate diploma in Bioinformatics)</li>
<li><a href="http://p-b.med.utoronto.ca/">University of Toronto&nbsp;</a>&nbsp;&nbsp;&nbsp;(Program in Proteomics and BioInformatics)</li>
<li><a href="http://www.cs.sfu.ca/gradpgm/Outlines/2002-3/CMPT-881-Gupta-02-3.txt">Simon Fraser University</a></li>
<li><a href="http://skypilot.microbiology.ubc.ca/micb405/">University of British Columbia</a></li>
<li><a href="http://www.csc.uvic.ca/~csc482c/">University of Victoria</a></li>
<li><a href="http://www.biology.ualberta.ca/courses/bioin301/">University of Alberta</a></li>
<li><a href="http://bhsc.myweb.med.ucalgary.ca/BioinformaticsCourseOutline.html">The University of Calgary, Faculty of Medicine, The O'Brien Centre offers Bachelor of Health Sciences program (BHSc) in Bioinformatics</a></li>
<li><a href="http://home.uleth.ca/bio/bio4110/4110.html">University of Lethbridge</a></li>
<li><a href="http://www.cs.usask.ca/classes/index.jsp?class=20">University of Saskatchewan</a></li>
<li><a href="http://www.umanitoba.ca/afs/plant_science/courses/bioinformatics/">University of Manitoba</a></li>
<li><a href="http://www.brocku.ca/webcal/2002/undergrad/courses/BIOL.html#BIOL_4P06">Brock University</a></li>
<li><a href="http://www.carleton.ca/~stsai/BCH406.html">Carleton University</a></li>
<li><a href="http://helix.biology.mcmaster.ca/courses.html">McMaster University</a></li>
<li><a href="http://www.cs.queensu.ca/home/cisc875/">Queen's University</a></li>
<li><a href="http://www.cis.uoguelph.ca/">University of Guelph</a></li>
<li><a href="http://www.site.uottawa.ca/~turcotte/teaching/csi-4126/">University of Ottawa</a></li>
<li><a href="http://www.artsandscience.utoronto.ca/ofr/calendar/crs_BCH.htm#BCH441H1">University of Toronto</a></li>
<li><a href="http://monod.uwaterloo.ca/ura.php">University of Waterloo offers Undergraduate research in Bioinformatics</a></li>
<li><a href="http://www.csd.uwo.ca/grad_topics.htm">University of Western Ontario</a></li>
<li><a href="http://www.wlu.ca/~wwwregi/2002-2003/cp461.htm">Wilfrid Laurier University</a></li>
<li><a href="http://gl.yorku.ca:8008/pro_compsci.nsf/08d6fa53808444e98525687300588e19/2378444a27b7ca3185256a3a006bbe06?OpenDocument">York University</a></li>
<li><a href="http://www.cs.concordia.ca/programs/grad/masters/comp691s.shtml">Concordia University</a></li>
<li><a href="http://www.medicine.mcgill.ca/pharma/">McGill University</a></li>
<li><a href="http://www.progcours.umontreal.ca/cours/index_fiche_cours/BCM2003.html">Universit&eacute; de Montr&eacute;al</a></li>
<li><a href="http://www.aci.mta.ca/Courses/Biochemistry/bc3531/bc3531courseoutline.html">Mount Allison University</a></li>
<li><a href="http://biocomp.chem.unb.ca:8080/chemcs/3003.html">University of New Brunswick</a></li>
<li><a href="http://macserver.biochem.dal.ca/html_files/gradbook/classes.html#5010">Dalhousie University</a></li>
<li><a href="http://www.upei.ca/registrar/html/gradcourses1.html#pathologymicrobiology">University of Prince Edward Island</a></li>
<li><a href="http://www.cs.mun.ca/~harold/Courses/List/CS4762.html">Memorial University of Newfoundlan</a></li>
</ul></div><p style="text-align: justify;"><strong>Europe</strong></p><div style="text-align: justify;">
<p><strong>UK</strong></p>
<ul>
<li><a href="http://www.cryst.bbk.ac.uk/pps/index.html">Birkbeck College, University of London&nbsp;</a>&nbsp;&nbsp;&nbsp;(Accredited online course in protein structure) M.Sc. in molecular modelling and bioinformatics</li>
<li><a href="http://www.cranfield.ac.uk/ibst/msc_bix/">Cranfield Centre for Bioinformatics and IT - MSc. Bioinformatics</a></li>
<li><a href="http://www.conted.ox.ac.uk/bioinformatics">Oxford University - Part-time MSc. in Bioinformatics</a></li>
<li><a href="http://www.abertay.ac.uk/prospectus/courses/course_details.cfm?coursenumber=285&amp;delivery_method=1">University of Abertay Dundee, UK&nbsp;</a>Information Technology (Bioinformatics) - PGDip/MSc</li>
<li><a href="http://www.dcs.ex.ac.uk/~ajit/bioinf/msc.htm">University of Exeter - MSc, Diploma and Certificate in Bioinformatics</a>MSc/MRes/PgDip/PgCert in Bioinformatics</li>
<li><a href="http://www.bioinf.leeds.ac.uk/mres.html">University of Leeds, M.Res. in Bioinformatics</a></li>
<li><a href="http://www.csc.liv.ac.uk/~martyn/biosystems">University of Liverpool, M. Sc. in Biosystems and Informatics</a></li>
<li><a href="http://www.bioinf.man.ac.uk/education/">University of Manchester, Masters Program&nbsp;</a>M.Sc. in bioinformatics, distance learning</li>
<li><a href="http://www.ccc.nottingham.ac.uk/~mbzmail/biochem/mphil/mphil.html">University of Nottingham, Master of Philosophy in Molecular Biology with Bioinformatics</a></li>
<li><a href="http://bbu.uwcm.ac.uk/html/training/msc.htm">University of Wales College of Medicine, Cardiff, UK - Masters/Diploma/Postgraduate Certificate in Genetic Epidemiology and Bioinformatics</a></li>
<li><a href="http://doolittle.ibls.gla.ac.uk/bioinformatics/index.html">University of Glasgow, MRes in Bioinformatics</a></li>
<li><a href="http://www.york.ac.uk/depts/biol/gsp/masters/bioinf/binfwelc.htm">University of York, MRes in Bioinformatics</a></li>
<li><a href="http://www.cse.dmu.ac.uk/mscbioinfo/">De Montfort University , MSc programme in Bioinformatics</a></li>
</ul></div><p style="text-align: justify;"><strong>Sweden</strong></p><div style="text-align: justify;"><ul>
<li><a href="http://www.ibg.uu.se/eng_courses/">Uppsala University, Sweden&nbsp;</a>(Basic courses)</li>
<li><a href="http://www.ida.his.se/ida/research/groups/biocomp/Welcome.chtml">University of Skovde, Sweden&nbsp;</a>&nbsp;&nbsp;&nbsp;(MSc in bioinformatics)</li>
<li><a href="http://www.md.chalmers.se/Stat/Bioinfo/Master/">Chalmers University Masters Program in Bioinformatics</a></li>
</ul></div><p style="text-align: justify;"><strong>Norway</strong></p><div style="text-align: justify;"><ul>
<li><a href="http://www.ii.uib.no/forskningsgrupper/bio/index-eng.shtml">University of Bergen, Norway&nbsp;</a>&nbsp;&nbsp;&nbsp;(Masters-level courses)</li>
</ul>
<p><strong>Germany</strong></p>
<ul>
<li><a href="http://www.imprs-cbsc.mpg.de/">Max Planck Institute for Molecular Genetics and Free University Berlin&nbsp;</a>, PhD programs at the IMPRS-CBSC</li>
<li><a href="http://www.techfak.uni-bielefeld.de/techfak/techfakengl.html">Univ.of Bielefeld, Naturwissenschaftliche Informatik&nbsp;</a>(Master's level course)</li>
<li><a href="http://www-ra.informatik.uni-tuebingen.de/lehre/bioinformatik.html">University of Tuebingen, Bioinformatics</a></li>
</ul><p><strong>Finland</strong></p><ul>
<li><a href="http://www.cs.helsinki.fi/combi/">Helsinki University, Graduate School in Computational Biology, Bioinformatics, and Biometry</a></li>
</ul><p><strong>France</strong></p><ul>
<li><a href="http://www.pasteur.fr/formation/infobio-uk.html">Pasteur Institute (France)&nbsp;</a>The bioinformatics courses at the Pasteur Institute are organized with the collaboration of the two largest Parisian scientific universities, Paris VI "Pierre et Marie Curie" and Paris VII "Denis Diderot". The diplomas delivered to students of these courses are considered equivalent to university degrees, for 1998 tuition of about 3 000 French Francs, or $500 US.&nbsp;</li>
<li><a href="http://imgt.cines.fr/textes/IMGTeducation/QuestionsAnswers/_FR/BioImmunoInformatique.html">Universit&eacute; Montpellier II (IMGT Education - Immunoinformatics) (France)</a></li>
<li><a href="http://www.irisa.fr/master-bioinfo/">Master's/PhD bioinformatique at Universite de Rennes</a></li>
<li><a href="http://condor.urbb.jussieu.fr/enseignement/dea/dea.php">Master's/PhD Analyse de G&eacute;nomes et Mod&eacute;lisation Mol&eacute;culaire Universit&eacute; Paris</a></li>
<li><a href="http://www.lami.univ-evry.fr/enseignements/Dea_bioinfo/main.html">Master's/PhD "Application des Math&eacute;matiques et de l'Informatique &agrave; la Biologie" at Universit&eacute; d'Evry</a></li>
<li><a href="http://www.adbt.com/intro.htm">Master's Bioinformatique at Universit&eacute; Paul Sabatier Toulouse</a></li>
<li><a href="http://lgi.infobiogen.fr/master_bioinfo/">Master's/PhD bioinformatique de Bioinformatique et Genomique at Universit&eacute; Versailles St Quentin</a></li>
<li><a href="http://www.univ-bpclermont.fr/">Master's Pro Bioinformatique, Universite de Clermont-Ferrand</a></li>
<li><a href="http://www.fil.univ-lille1.fr/FORMATIONS/DESSBIOINFO/">Master's Bioinformatique at Universite de Lille</a></li>
<li><a href="http://afmb.cnrs-mrs.fr/dea/">Mastere Sciences, Mention: Bioinformatique, Biochimie Structurale et G&eacute;nomique (BBSG) at Aix-Marseille University</a></li>
<li></li>
<li><em>(Universiteit) Amsterdam&nbsp;</em>, Amsterdam, The Netherlands&nbsp;<a href="http://ibivu.cs.vu.nl/">Centre for Integrative Bioinformatics</a>&nbsp;<br /><a href="http://ibivu.cs.vu.nl/teaching/">2-year International Masters in bioinformatics</a></li>
<li><em>(Univ of) Athens&nbsp;</em>, Athens, Greece Bioinformatics postgraduate programme, Faculty of biology&nbsp;<br /><a href="http://bioinformatics.biol.uoa.gr/msc/index-en.html">http://bioinforMatics.biol.uoa.gr/msc/index-en.html</a>&nbsp;<br />Semester A: 1. molecular biology &amp; genomics; 2. biomolecular structure and function; 3. programming languages and software tools in bioinformatics (I); 4. statistics in bioinformatics; 5. principles and methods in bioinformatics; 6. application of informatics in the study and preservation of biodiversity.&nbsp;<br />Semester B: 1. computational analysis of biomacromolecular sequences; 2. computational analysis of biomacromolecular structures; 3. programming languages and software tools in bioinformatics (II); 4. molecular recognition - molecular diseases - structural drug design; 5. methodology of research.&nbsp;<br />Optional courses: 1. data types - databases - biological database design; 2. architecture of internet application and bioinformatics; 3. intelligent system techniques in bioinformatics; 4. complex adaptive systems; 5. special topics in bioinformatics.</li>
<li><em>Associazione Italiana Logica ed Applicazioni (AILA)&nbsp;</em>, Italy&nbsp;<br />one time only,&nbsp;<br /><a href="http://alpha.dipmat.unict.it/~lipari/lastedition.html">11th International School for Computer Science Researchers: Computational Biology, June 20- July 3, 1999</a></li>
<li><em>(Universitat de) Barcelona&nbsp;</em>and&nbsp;<em>(Universitat) Pompau Fabra&nbsp;</em>, Spain&nbsp;<br />Roderic Guigo, Enrique Blanco, Genis Parra, Sergi Castellano&nbsp;<br /><a href="http://genome.imim.es/main/seminars.html">a course on sequence analysis, a course on gene finding, a course on analysis of promoter region,...&nbsp;<br /></a><a href="http://www.upf.edu/idec/mbio/">master: bioinformatics for health sciences (2004-2005)</a></li>
<li><em>(Univ of) Bergen&nbsp;</em>, Norway&nbsp;<br />Dept of Informatics,&nbsp;<br /><a href="http://www.ii.uib.no/undervisning/kurs/i181/">I181 (Soking og maskinlaring)&nbsp;</a><br /><a href="http://www.uib.no/mbi/kb207/">KB207 (anvendt bioinformatikk), Fall 1999</a></li>
<li><em>(Universita di) Bologna&nbsp;</em>, Italy&nbsp;<br /><strong>DEGREE:</strong>&nbsp;Laurea Specialistica in bioinformatics&nbsp;<a href="http://www.biocomp.unibo.it/lsbioinfo/">http://www.biocomp.unibo.it/lsbioinfo/</a></li>
<li><em>(Univ of) Buckingham&nbsp;</em>, UK&nbsp;<br /><a href="http://www.buckingham.ac.uk/informationsystems/">Information Systems Department</a>, plus&nbsp;<a href="http://www.buckingham.ac.uk/clore/">Diabetes, Obesity and Metabolic Research Lab&nbsp;<br /></a><a href="http://www.buckingham.ac.uk/news/newsarchive/bioinformatics.html">MSc program on bioinformatics</a></li>
<li><em>(Univ of) Cambridge&nbsp;</em>, UK&nbsp;<a href="http://www.damtp.cam.ac.uk/BIO/mphil.html">MPhil in Computational Biology</a></li>
<li><em>Chalmers Univ&nbsp;</em>(and Goteborg Univ), Sweden&nbsp;<br />Math,&nbsp;<br /><a href="http://www.math.chalmers.se/Stat/Bioinfo/Educ/gucourses.html">MSN48, bioinformatics for biologists; MSN54, second course in bioinformatics; MSN56, population genetics; MSN55, statistical genetics</a></li>
<li><em>Cranfield Univ&nbsp;</em>, Silsoe, UK&nbsp;<br /><a href="http://www.cranfield.ac.uk/ibst/ccbit/">Centre for Bioinformatics &amp; IT&nbsp;</a><br /><a href="http://www.cranfield.ac.uk/ibst/msc_bix/">MSc in bioinformatics</a></li>
<li><em>De Montfort University</em>, UK&nbsp;<br /><a href="http://www.dmu.ac.uk/Subjects/Db/?course=774">Bioinformatics MSc program 2003/2004</a></li>
<li><em>Dublin City University</em>, Dublin, Ireland&nbsp;<a href="http://www.dcu.ie/prospective/deginfo.php?classname=MBIO">MSs in bioinformatics</a></li>
<li><em>Eidgenossische Technische Hochschule Zurich</em>&nbsp;<br />Gina Cannarozzi&nbsp;<br /><a href="http://www.inf.ethz.ch/personal/cannaroz/courses/compbio/index.html">37-524 (computational biology), Oct 2000 - Feb 2001&nbsp;</a><br />Lars Ellgaard&nbsp;<br /><a href="http://www.inf.ethz.ch/personal/hallett/Bioinfo/bioinfo.html">01-327 (introduction to bioinformatics)</a></li>
<li><em>European Molecular Biology Network - Italian Node&nbsp;</em>, Consiglio Nazionale delle Ricerche (CNR), Bari, Italy<br />David Judge, James Bonfield, three-day course<br /><a href="http://www.ba.cnr.it/Meeting/StadenCourse.html">Sequencing Project Management Using the Staden package, September 20 - 22, 1999</a></li>
<li><em>European Molecular Biology Network - Swiss Node&nbsp;</em>, Switzerland&nbsp;<br />one-week course<br /><a href="http://www.ch.embnet.org/CoursEMBnet/Pages/Introduction.html">introduction to sequence analysis, Sept 2000</a></li>
<li><em>European Genetic Foundation&nbsp;</em>, Bologna, Italy&nbsp;<a href="http://www.eurogene.org/pages/train/courses/listbody.php?q=all">one-week courses</a>&nbsp;<br /><a href="http://www.eurogene.org/body.php?t=1&amp;l=l&amp;p=pages/train/courses/crsprogr.php&amp;r=61">5th course in bioinformatics (Mar 20-24, 2005)&nbsp;</a><br /><a href="http://www.eurogene.org/body.php?t=1&amp;l=l&amp;p=pages/train/courses/crsprogr.php&amp;r=43">4th course in bioinformatics for functional genomics (March 26-30, 2004)&nbsp;</a><br /><a href="http://www.eurogene.org/body.php?t=1&amp;l=l&amp;p=pages/train/courses/crsprogr.php&amp;r=10">3rd course in bioinformatics (Aug 24-28, 2002)&nbsp;</a><br /><a href="http://www.eurogene.org/body.php?t=1&amp;l=l&amp;p=pages/train/courses/crsprogr.php&amp;r=4">2rd course in bioinformatics (Nov 14-18, 2001)&nbsp;</a><br /><a href="http://www.eurogene.org/body.php?t=1&amp;l=l&amp;p=pages/train/courses/crsprogr.php&amp;r=24">1st course in bioinformatics (Oct 22-26, 2000)</a></li>
<li><em>European Science Foundation&nbsp;</em>, UK and other european countries&nbsp;<br /><a href="http://www.functionalgenomics.org.uk/sections/news/other_meetings.htm">various</a></li>
<li><em>European School of Genetic Medicine, Italy&nbsp;</em><br /><a href="http://www.eurogene.org:8080/body.php?t=1&amp;l=l&amp;p=pages/train/courses/crsprogr.php&amp;r=111">8th course in Bioinformatics &amp; Systems Biology for Molecular Biologists, Bertinoro di Romagna, Italy, 16-20 May, 2008.</a></li>
<li><em>Exeter Univ</em>, UK&nbsp;<br />School of Engineering and Computer Science and School of Biological Sciences, Postgraduate Programmes in Bioinformatics (E594/D594/C594)&nbsp;<br /><a href="http://www.dcs.ex.ac.uk/~ajit/bioinf/full_modules.html">BIO6201 (generic and transferable skills for bioinformatics), BIO6202 (bioinformatics tools and techniques), BIO6203 (biological sequence analysis and structural bioinformatics), BIO6204 (machine learning techniques in bioinformatics), BIO6205 (information systems for bioinformatics), BIO6206 (biotechnology and bioethics), BIO6207 (masters research project in bioinformatics), BIO6208 (diploma research project).</a></li>
<li><em>Free Univ Berlin&nbsp;</em>Germany&nbsp;<br />Steffen Schulze-Kremer&nbsp;<br /><a href="http://igd.rz-berlin.mpg.de/~steffen/ss93.html">Molekulare Bioinformatik, Summer 1993</a>;&nbsp;<a href="http://igd.rz-berlin.mpg.de/~steffen/ws94.html">Winter 1993-94&nbsp;</a>;&nbsp;<a href="http://igd.rz-berlin.mpg.de/~steffen/ss95.html">Summer 1995</a></li>
<li><em>(Univ of) Geneva&nbsp;</em>,&nbsp;<em>Swiss Institute of Bioinformatics</em>, and&nbsp;<em>(Univ of) Lausanne&nbsp;</em>, Switzerland&nbsp;<br /><a href="http://www.isb-sib.ch/DEA/">Diplome d'etudes approfondies (DEA) plurifacultaire en Bioinformatique</a></li>
<li><em>(Univ of) Glasgow&nbsp;</em>, Glasgow, Scottland, UK&nbsp;<br />Institute of Biomedical and Life Sciences&nbsp;<br /><a href="http://doolittle.ibls.gla.ac.uk/bioinformatics/index.html">Master of Research (MRes) in bioinformatics&nbsp;</a>(<a href="http://www.gla.ac.uk/ibls/GradSchool/mastbio.htm">another page</a>)</li>
<li><em>Graz Univ of Technology</em>, Austria&nbsp;<br /><a href="http://genome.tugraz.at/">Bioinformatics group of Institute of Biomedical Engineering</a>&nbsp;<br /><a href="http://genome.tugraz.at/Education/Bioinformatics.html">445.037, 445.038 (bioinformatics)</a></li>
<li><em>(Instituto) Gulbenkian de Ciencia&nbsp;</em>, Portugal&nbsp;<a href="http://pen2.igc.gulbenkian.pt/bicourses/">bioinformatics training courses ( several weekly course per year)</a></li>
<li><em>(Univ of) Helsinki&nbsp;</em>, Helsinki, Finland&nbsp;<br /><strong>DEGREE:</strong>&nbsp;Master in bioinformatics&nbsp;<a href="http://www.cs.helsinki.fi/bioinformatiikka/mbi/">http://www.cs.helsinki.fi/bioinformatiikka/mbi/</a>&nbsp;<br /><strong>DEGREE:</strong>&nbsp;Ph.D program in computational biology, bioinformatics, and biometry<a href="http://www.cs.helsinki.fi/combi/">http://www.cs.helsinki.fi/combi/</a></li>
<li><em>Human Genome Mapping Project Resource Centre&nbsp;</em>, UK&nbsp;<br />2-3 days course&nbsp;<br /><a href="http://www.hgmp.mrc.ac.uk/About/Courses/2000/comp.intro.course.html">introductory biocomputing course, 2000</a>;&nbsp;<a href="http://www.hgmp.mrc.ac.uk/About/Courses/comp.intro.course1999.html">1999&nbsp;</a>;&nbsp;<br /><a href="http://www.hgmp.mrc.ac.uk/About/Courses/2000/comp.geneid.course.html">gene ID and protain analysis, 2000</a>;&nbsp;<a href="http://www.hgmp.mrc.ac.uk/About/Courses/comp.geneid.course1999.html">June 1999&nbsp;</a>;&nbsp;<br /><a href="http://www.hgmp.mrc.ac.uk/About/Courses/2000/comp.seq.course.html">sequencing project management, 2000</a>;&nbsp;<a href="http://www.hgmp.mrc.ac.uk/About/Courses/comp.seq.course1999.html">1999&nbsp;</a>;&nbsp;<br /><a href="http://www.hgmp.mrc.ac.uk/About/Courses/2000/comp.prot.course.html">protein structure prediction, 2000</a>;&nbsp;<a href="http://www.hgmp.mrc.ac.uk/About/Courses/comp.prot.course1999.html">Nov 1999&nbsp;</a>;<br /><a href="http://www.hgmp.mrc.ac.uk/About/Courses/2000/comp.acedb.course.html">ACEDB workshop, 2000</a></li>
<li><em>Humboldt Univ Berlin&nbsp;</em>, Germany&nbsp;<br />H Herzel, J Schuchhardt&nbsp;<br /><a href="http://itb.biologie.hu-berlin.de/students/current.html">G-31163 (introduction to bioinformatics), winter 1999-2000</a></li>
<li><em>Imperial College&nbsp;</em>, London, UK&nbsp;<br />MC Field, Director&nbsp;<br /><a href="http://www.bio.ic.ac.uk/teaching/pg/bioinf.htm">MSc in bioinformatics</a></li>
<li><em>International Centre for Genetic Engineering and Biotechnology&nbsp;</em>, Trieste, Italy&nbsp;<br />Sandor Pongor, organizer (one week course)&nbsp;<br /><a href="http://www.icgeb.trieste.it/net/courses/bioinfo97.html">bioinformatics: computer methods in molecular biology, Sept 1-6, 1997</a>;&nbsp;<a href="http://www.icgeb.trieste.it/net/courses/bioinfo98.htm">July 3-10, 1998</a>;&nbsp;<a href="http://www.icgeb.trieste.it/net/courses/bioinfo99.html">9-16 July 1999&nbsp;</a>;&nbsp;<a href="http://www.icgeb.trieste.it/crs00bio.htm">june 30 -july 7, 2000</a></li>
<li><em>International Max Planck Research School for Computational Biology and Scientific Computing&nbsp;</em>, Berlin, Germany&nbsp;<a href="http://www.imprs-cbsc.mpg.de/">http://www.imprs-cbsc.mpg.de/</a>&nbsp;<br />3-year Ph.D program starting in October.</li>
<li><em>Karolinkska Institute&nbsp;</em>, Sweden&nbsp;<br />Niclas Jareborg, Bill Wilson, Pia Jorgensen (one week course)&nbsp;<br /><a href="http://kisac.cgr.ki.se/kisac/education/courses/ki99/ki99.html">biomedicin - bioinformatics course</a>;&nbsp;<br /><a href="http://kisac.cgr.ki.se/kisac/education/courses/may99/may99.html">bioinformatics, May 1999</a>&nbsp;<br /><a href="http://kisac.cgr.ki.se/kisac/education/courses/KTH-SU/courseKTH.html">Introduktion till bioinformatik, Jan-Feb 1999</a></li>
<li><em>Katholieke Universiteit Leuven&nbsp;</em>, Leuven, Belgium&nbsp;<a href="http://www.esat.kuleuven.ac.be/sista/GGS/">master of bioinformatics</a></li>
<li><em>King's College London&nbsp;</em>, UK&nbsp;<br /><strong>DEGREE</strong>: MSc/PG, PhD&nbsp;<a href="http://www.kcl.ac.uk/schools/pse/bioinform/">http://www.kcl.ac.uk/schools/pse/bioinform/</a></li>
<li><em>(Univ of) Leeds&nbsp;</em>, UK&nbsp;<br /><a href="http://www.bioinf.leeds.ac.uk/mres/index.html">Master in Research in bioinformatics&nbsp;</a>,&nbsp;<br /><a href="http://webprod1.leeds.ac.uk/banner/dynprogrammes.asp?Y=200405&amp;P=MOR-BIOC%2FBCB">BIOL5020M (bioinformatics of protein sequence, structure and function); BIOL5030M (bioinformatics project) BIOL5010M (bioinformatics programming (1)); BIOL5120M (bioinformatics programming (2)); BIOL5160M (bioinformatics of transcriptomic and proteomics); BIOL5170M (advanced options in bioinformatics and computational biology);&nbsp;</a><br /><a href="http://wunlearn.leeds.ac.uk/details">online MSc Bioinformatics program</a></li>
<li><em>(Univ of) Libre de Bruxelles&nbsp;</em>, Belgium&nbsp;<br /><a href="http://www.ulb.ac.be/">Univ Libre de Bruxelles</a>&nbsp;(ULB) plus 4 other universities:&nbsp;<a href="http://www.fundp.ac.be/">Facultes Univ Notre-Dame de la Paix</a>(FUNDP),&nbsp;<a href="http://www.ulg.ac.be/">Univ de Liege&nbsp;</a>(ULG),&nbsp;<a href="http://www.ucl.ac.be/">Univ Catholique de Louvain</a>&nbsp;(UCL), and&nbsp;<a href="http://w3.umh.ac.be/">Univ de Mons-Hainaut</a>&nbsp;(UMH), jointly organize a&nbsp;<a href="http://www.ucmb.ulb.ac.be/bioinformatics/dea/index_en.html">master program in bioinformatics</a>&nbsp;<br /><a href="http://www.ucmb.ulb.ac.be/bioinformatics/dea/dea_program_en.html">course (fall, 2000)</a></li>
<li><em>(Universidade de) Lisboa, Faculdade de Ciencias da</em>&nbsp;(Faculty of Sciences of the University of Lisbon), Portugal&nbsp;<a href="http://bioinformatics.fc.ul.pt/index.html">post-graduate programme in bioinformatics (certificate, one year)</a></li>
<li><em>Ludwig-Maximilians-Universitat&nbsp;</em>, Germany&nbsp;<a href="http://www.bio.ifi.lmu.de/EFV/index-e_Bachelor.html">bachelor in bioinformatics</a></li>
<li><em>(Univ) Manchester</em>, UK&nbsp;<br /><a href="http://bioinf.man.ac.uk/">Bioinformatics Unit&nbsp;</a><br /><a href="http://bioinf.man.ac.uk/mscdesc.htm">BS5061 (bioinformatics I), BS5072 (bioinformatics II), BS6220 (theory and algorithms in bioinformatics), BS5092 (biocomputing)</a></li>
<li><em>(Uni de la) Mediterannee&nbsp;</em>, Marseille, France&nbsp;<br />Daniel Gauthret&nbsp;<br /><a href="http://igs-server.cnrs-mrs.fr/~gauthere/Cours">bioinformatique, 2000</a></li>
<li><em>National University of Ireland&nbsp;</em>, Maynooth, Ireland&nbsp;<br /><a href="http://bioinf.may.ie/EMBO/">EMBO Bioinformatics Workshop (June 25 - July 1, 2001)&nbsp;</a><br /><a href="http://bioinf.may.ie/degree/bioinf/index.html">undergraduate degree in computational biology and bioinformatics</a>&nbsp;<br /><a href="http://bioinf.may.ie/school02/">bioinformatics summer school 2002</a></li>
<li><em>(Univ of) Nijmegen&nbsp;</em>, Nijmegen, The Netherlands&nbsp;<br /><a href="http://www.cmbi.kun.nl/">Centre for Molecular and Biomolecular Informatics</a>,&nbsp;<br /><a href="http://www.cmbi.kun.nl/edu/students/">Bioinformatics 1,2,3,4,5&nbsp;</a><br /><a href="http://www.cmbi.kun.nl/edu/scientists/summercourse/index.shtml">introduction to bioinformatics, aug 18-29, 2003</a></li>
<li><em>Norges Teknisk-Naturvitenskapelige Universitet&nbsp;</em>, Norway&nbsp;<a href="http://www.ntnu.no/bioinformatics/">bioinformatics program</a></li>
<li><em>Oxford Univ&nbsp;</em>, UK&nbsp;<br /><a href="http://www.molbiol.ox.ac.uk/">Bioinformatics Centre&nbsp;</a>, School of Pathology&nbsp;<br /><a href="http://www.molbiol.ox.ac.uk/cgi-bin/courses.cgi">OUBC training courses&nbsp;</a><br />Part-time Modular MSc in Bioinformatics and regular short professional updating courses, Continuing Professional Development Centre,&nbsp;<a href="http://www.conted.ox.ac.uk/courses/biosciences.html">Oxford Programme in Biosciences</a>&nbsp;<br /><a href="http://www.conted.ox.ac.uk/courses/biosci/biocourses/Bioinformatics.html">introduction to bioinformatics, three-day course, TBA&nbsp;</a><br /><a href="http://www.conted.ox.ac.uk/courses/biosci/biocourses/GenomeMining.htm">mining the knowledge of the new genomes, two-day course, TBA</a>&nbsp;<br /><a href="http://www.conted.ox.ac.uk/courses/biosci/biocourses/Algorithms.html">algorithm design, one-week course, TBA</a>&nbsp;<br /><a href="http://www.conted.ox.ac.uk/courses/biosci/biocourses/Microarrays.html">microarray bioinformatics, july 1-7, 2002; nov 25-29, 2002</a>&nbsp;<br /><a href="http://www.conted.ox.ac.uk/courses/biosci/biocourses/Genome%20Analysis.html">genome analysis, nov 18-21, 2002</a></li>
<li><em>Pasteur Institute&nbsp;</em>, France&nbsp;<br /><a href="http://www.pasteur.fr/formation/infobio-uk.html">various courses on informatics in biology, Jan-Apr, 2000</a></li>
<li><em>Royal Holloway, University of London&nbsp;</em>, UK&nbsp;<br /><a href="http://www.rhul.ac.uk/Biological-Sciences/Research/tmsc.html">MSc in computational biology for genomics and proteomics</a></li>
<li><em>(Universite de) Rouen&nbsp;</em>, France&nbsp;<br /><strong>DEGREE</strong>: Master professionel de Bioinformatique&nbsp;<a href="http://www.univ-rouen.fr/ABISS/MasterBioinfo/">http://www.univ-rouen.fr/ABISS/MasterBioinfo/</a></li>
<li><em>(Universitat des) Saarlandes&nbsp;</em>, Germany&nbsp;<br /><strong>DEGREE</strong>: B.S.&nbsp;<a href="http://www.uni-saarland.de/de/studium/studienangebot/bioinformatik/">http://www.uni-saarland.de/de/studium/studienangebot/bioinformatik/</a>&nbsp;<br /><strong>DEGREE</strong>: Master of science&nbsp;<a href="http://www.uni-saarland.de/de/studium/stud_int/englisch/bioinformatik/">http://www.uni-saarland.de/de/studium/stud_int/englisch/bioinformatik/</a>&nbsp;<a href="http://www.uni-saarland.de/de/studium/studienangebot/angebot_abschluss/master/bioinformatik/">http://www.uni-saarland.de/de/studium/studienangebot/angebot_abschluss/master/bioinformatik/</a>&nbsp;<br /><strong>COURSE&nbsp;</strong>:&nbsp;<a href="http://zbi-www.bioinf.uni-sb.de/teaching/courses">http://zbi-www.bioinf.uni-sb.de/teaching/courses</a></li>
<li><em>(Univ of) Skovde&nbsp;</em>, Sweden&nbsp;<br />CS&nbsp;<br /><strong>DEGREE</strong>: (one year) Master&nbsp;<a href="http://his.se/bioinformatics">http://his.se/bioinformatics</a></li>
<li><em>Stockholm Univ&nbsp;</em>, Sweden&nbsp;<br />Arne Elofsson,&nbsp;<br /><a href="http://www.biokemi.su.se/~arne/kurser/struktbiokemi_1999/">structural biochemistry and bioinformatics, oct 1999-jan 2000</a>;<br /><a href="http://www.biokemi.su.se/~arne/kurser/kurs_99/">bioinformatics, may-june 1999</a></li>
<li><em>Technical Univ of Denmark&nbsp;</em>, Denmark&nbsp;<br />Steen Knudsen, Geeske de Witte Vestergaard<br /><a href="http://www.cbs.dtu.dk/courses.php">Center for Biological Sequence Analysis courses</a></li>
<li><em>(Univ of) Ulster&nbsp;</em><a href="http://www.ulster.ac.uk/courses/modules/courses/F137PC.html">F137PC: MSc bioinformatics&nbsp;</a><br /><a href="http://www.ulster.ac.uk/courses/modules/courses/F536PC.html">F536PC: PG Dip bioinformatics&nbsp;</a><a href="http://www.ulster.ac.uk/courses/modules/courses/F138PC.html">F138PC: PG Dip bioinformatics</a></li>
<li><em>Uppsala Univ&nbsp;</em>, Sweden&nbsp;<br />Mats Gustafsson, Helena Danielson, Gerard Kleywegt&nbsp;<br /><a href="http://www.student.ibg.uu.se/~mobinfo">990304 (molecular bioinformatics), 2000, 1999&nbsp;</a>;&nbsp;<br />Linnaeus Centre for Bioinformatics&nbsp;<br /><a href="http://linnaeus.bmc.uu.se/course/bioinfo_ht99/bioinfo.html">bioinformatics, aug-oct 1999&nbsp;</a>;&nbsp;<br /><a href="http://linnaeus.bmc.uu.se/course/ugsbr/">basics of bioinformatics&nbsp;</a>;&nbsp;<br /><a href="http://linnaeus.bmc.uu.se/course/dist_ht99/">distance course in bioinformatics, 1999</a>;&nbsp;<br /><a href="http://alpha2.bmc.uu.se/embo/">EMBO practical course: from genome sequences to protein structures, 1999</a></li>
<li><em>(Universiteit) Utrecht&nbsp;</em>, The Netherlands&nbsp;<a href="http://www-binf.bio.uu.nl/master/mainmasters.html">Msc program in theoretical biology and bioinformaticcs</a></li>
<li><em>(Univ of) Valencia</em>, Spain&nbsp;<br />Andres Moya Simarro, Fernando Gonzalez Candelas&nbsp;<br /><a href="http://swright.uv.es/fgc/Postgrad.htm">Curso nacional de bioinformatica y biocomputacion,&nbsp;</a><br />Fernando Gonzalez Candelas&nbsp;<br /><a href="http://swright.uv.es/fgc/ACS.htm">Analisis de secuencias de acidos nucleicos, 1997-1998</a></li>
<li><em>(Univ of) Wales College of Medicine</em>, UK&nbsp;<a href="http://bbu.uwcm.ac.uk/html/training/msc.htm">MSc/Postgraduate Diploma/Postgraduate Certificate (bioinformatics, genetic epidemiology and bioinformatics)</a></li>
<li><em>(Univ of) York&nbsp;</em>, UK&nbsp;<br /><strong>DEGREE</strong>: Master of Research in Computational Biology,<a href="http://www.york.ac.uk/biology/masters/cb">http://www.york.ac.uk/biology/masters/cb</a></li>
</ul><p><strong>Denmark</strong></p><ul>
<li><a href="http://www.cbs.dtu.dk/Welcome.html">Technical University of Denmark, Center for Biological Sequence Analysis&nbsp;</a>(Master's and Phd courses)</li>
<li><a href="http://www.binf.ku.dk/view/binf_udd_uk">University of Copenhagen, Bioinformatics Centre offers Master's Programme in Bioinformatics</a></li>
<li><a href="http://www.studieguide.sdu.dk/studier/index.php?uid=91&amp;id=1117&amp;picid=1117">Syddansk Universitet offers offers both BSc and MSc level in Bioinformatics</a></li>
</ul><p><strong>Belgium</strong></p><ul>
<li><a href="http://www.bioinfomaster.ulb.ac.be/">Inter-University DEA/DES&nbsp;</a>&nbsp;&nbsp;&nbsp;(Masters program in Bioinformatics)</li>
<li><a href="http://www.esat.kuleuven.ac.be/sista/GGS/">Katholieke Universitiet&nbsp;</a>&nbsp;&nbsp;&nbsp;(Masters program in Bioinformatics)</li>
</ul><p><strong>Switzerland</strong></p><ul>
<li><a href="http://www.isb-sib.ch/">Swiss Institute of Bioinformatics&nbsp;</a>&nbsp;&nbsp;&nbsp;(Masters program)</li>
</ul><p><strong>Austria</strong></p><ul>
<li><a href="http://genome.tugraz.at/">Bioinformatics at the Institute of Biomedical Engineering, Graz University of Technology&nbsp;</a></li>
</ul>
<p><strong>Israel</strong><a name="is" id="is"></a></p>
<ul>
<li><a href="http://bioinformatics.weizmann.ac.il/courses/">Weizmann Institute&nbsp;</a>&nbsp;&nbsp;&nbsp;(Online course materials)</li>
</ul><p><strong>New Zealand</strong></p><ul>
<li><a href="http://www2.auckland.ac.nz/science/subjects/bioinform.ptml">University of Auckland, New Zealand&nbsp;</a>&nbsp;&nbsp;&nbsp;(BSc (Hons) in bioinformatics)</li>
<li><em>(Univ of) Otago&nbsp;</em>, New Zealand&nbsp;<br /><strong>DEGREE</strong>: Bioinformatics is not at present taught as a separate degree course, but as integral components of other courses in Biology. Mathematics, Computer and Information Sciences&nbsp;<br /><a href="http://mrna.otago.ac.nz/Bioinfo/Bioinfo_teaching.html">http://mrna.otago.ac.nz/Bioinfo/Bioinfo_teaching.html</a></li>
<li><em>Massey University</em>, New Zealand&nbsp;<br /><strong>DEGREE</strong>: Bachelor of Science (Bioinformatics)</li>
<li><a href="http://mrna.otago.ac.nz/Bioinfo/Bioinfo_teaching.html"><em>(Univ of) Auckland&nbsp;</em>, Auckland, New Zealand&nbsp;<br /><strong>INSTITUTE</strong>:&nbsp;http://www.bioinformatics.org.nz/&nbsp;</a></li>
</ul><p><a href="http://mrna.otago.ac.nz/Bioinfo/Bioinfo_teaching.html"><strong>Australia</strong></a></p><ul>
<li><a href="http://bioserve.biochem.latrobe.edu.au/bioinf/course.html">La Trobe University&nbsp;</a>&nbsp;&nbsp;&nbsp;(Basic course)</li>
<li><a href="http://www.cs.mu.oz.au/courses/ugrad/bcsbioinf.html">University of Melbourne&nbsp;</a>&nbsp;&nbsp;&nbsp;(Bioinformatics stream within BSc degree)</li>
<li><a href="http://biochem.otago.ac.nz/chrisb/Bioinfo.htm">University of Otago - Dunedin, New Zealand&nbsp;</a>&nbsp;&nbsp;&nbsp;(Basic courses)</li>
<li><a href="http://florey.biosci.uq.edu.au/Subjects/BC327/index.html">University of Queensland&nbsp;</a>&nbsp;&nbsp;&nbsp;(3rd-year course)</li>
<li><a href="http://www.scifac.usyd.edu.au/future/ug/bsc-bio.html">University of Sydney&nbsp;</a>&nbsp;&nbsp;&nbsp;(BSc program)</li>
<li><a href="http://www.cse.unsw.edu.au/school/teaching/courses/Bioinformatics.html">University of New South Wales&nbsp;</a>(Bachelor of Engineering in Bioinformatics Programme)</li>
<li><a href="http://www.flinders.edu.au/courses/ugrad/bachelor/bbioinfo.htm">Flinders University&nbsp;</a>(Bachelor's Programme in Bioinformatics)</li>
<li><em>Australian National University&nbsp;</em>, Canberra, Australia&nbsp;<br /><strong>DEGREE</strong>: Bachelor of Computer Science with a BioInformatics Emphasis<a href="http://wwwmaths.anu.edu.au/study/bcomptlsci/bioinformatics.html">http://wwwmaths.anu.edu.au/study/bcomptlsci/bioinformatics.html</a></li>
<li><em>Central Queensland University&nbsp;</em>, Rockhampton, Australia&nbsp;<br /><strong>DEGREE</strong>: Bachelor of Information Technology (Bioinformatics)<a href="http://handbook.cqu.edu.au/Handbook/programs_2.jsp?s=2&amp;code=CQ08">http://handbook.cqu.edu.au/Handbook/programs_2.jsp?s=2&amp;code=CQ08</a></li>
<li><em>Curtin University of Technology&nbsp;</em>, Perth, Australia&nbsp;<br /><strong>DEGREE</strong>: Graduate Certificate in Applied Bioinformatics<a href="http://handbook.curtin.edu.au/courses/30/301135.html">http://handbook.curtin.edu.au/courses/30/301135.html</a></li>
<li><em>Flinders Univ&nbsp;</em>, Adeliade, Australia&nbsp;<br /><strong>DEGREE</strong>: Bachelor of Science in Bioinformatics and Molecular Biology (no new students in 2006)&nbsp;<a href="http://www.flinders.edu.au/calendar/vol2/ug/BScBioinf.htm">http://www.flinders.edu.au/calendar/vol2/ug/BScBioinf.htm</a>&nbsp;CA Abbott&nbsp;<br /><a href="http://stusyswww.flinders.edu.au/topic.taf?subj=BINF&amp;numb=2201&amp;type=Calendar&amp;year=2002">BINF 2201 (bioinformatics 2)</a></li>
<li><em>La Trobe University&nbsp;</em>, Latrobe, Australia&nbsp;<br /><strong>DEGREE</strong>: Bachelor of Bioinformatics/Bachelor of Science<a href="http://www.latrobe.edu.au/biochemistry/bioinformatics/index.html">http://www.latrobe.edu.au/biochemistry/bioinformatics/index.html</a>&nbsp;<br /><strong>DEGREE</strong>: Master of Biotechnology and Bioinformatics<a href="http://www.latrobe.edu.au/biochemistry/mastersinbiotech/index.html">http://www.latrobe.edu.au/biochemistry/mastersinbiotech/index.html</a></li>
<li><em>(Univ of) Melbourne</em>, Melbourne, Australia&nbsp;<br /><strong>DEGREE</strong>: BCs with concentration in Bioinformatics<a href="http://www.cs.mu.oz.au/courses/ugrad/bcsbioinf.html">http://www.cs.mu.oz.au/courses/ugrad/bcsbioinf.html</a></li>
<li><em>(Univ of) Queensland&nbsp;</em>, Australia&nbsp;<br /><strong>DEGREE</strong>: Bioinformatics in the Bachelor of Biotechnology<a href="http://www.uq.edu.au/study/plan.html?acad_plan=BIOINX2055">http://www.uq.edu.au/study/plan.html?acad_plan=BIOINX2055</a></li>
<li><em>RMIT University&nbsp;</em>, Melbourne, Australia&nbsp;</li>
<li><em>(Univ of) Southern Queensland&nbsp;</em>Australia&nbsp;<br /><strong>DEGREE</strong>: Bachelor of BioInformatics</li>
<li><em>(Univ of) Western Australia&nbsp;</em>, Australia&nbsp;<br /><strong>DEGREE</strong>: Bachelor of Science (Informatics)</li>
<li><em>(Univ of) Wollongong&nbsp;</em>, Australia&nbsp;<br /><strong>DEGREE</strong>: Bachelor of Computer Bioinformatics</li>
</ul><p><strong>Asia &amp; South Pacific</strong><a name="asia" id="asia"></a></p><ul>
<li><a href="http://www.bii-sg.org/index.html">BioInformatics Institute, Singapore&nbsp;</a>&nbsp;&nbsp;&nbsp;(Masters program)</li>
<li><a href="http://www.bic.nus.edu.sg/">National University of Singapore&nbsp;</a>&nbsp;&nbsp;&nbsp;(Training and workshops)</li>
<li><a href="http://www.ntu.edu.sg/sce/msc-bioinformatics-intro.asp">Nanyang Technological University, Singapore&nbsp;</a>&nbsp;&nbsp;&nbsp;(Master of Science in Bioinformatics)</li>
<li><a href="http://www.life.nthu.edu.tw/jkhwang/class/bioinfo/main.html">National Tsing Hua University, Taiwan&nbsp;</a>&nbsp;&nbsp;&nbsp;(Undergraduate course)</li>
<li><a href="http://www.hku.hk/bruhk/bscbioinf.html">University of Hong Kong&nbsp;</a>&nbsp;&nbsp;&nbsp;(Bachelor of Science in Bioinformatics)</li>
<li><a href="http://combi.um.edu.my/">University of Malaya, Malaysia&nbsp;</a>&nbsp;&nbsp;&nbsp;(offers BSc &amp; Msc in Bioinformatics)</li>
<li><a href="http://www.ukm.my/english/ug_fst.htm#program">Kebangsaan University, Malaysia&nbsp;</a>&nbsp;&nbsp;&nbsp;(offers Bachelors of Science (Honours) in Bioinformatics)</li>
<li><a href="http://www.jinnah.edu.pk/PROGRAMS/Programs.htm">Mohammad Ali Jinnah University, Pakistan&nbsp;</a>&nbsp;&nbsp;&nbsp;(offers Bachelor of Science in Bioinformatics)</li>
<li><a href="http://www.ciit.edu.pk/ciit1/links/departments/bs_bio/bs_bio.htm">COMSATS Institute of Technology, Pakistan&nbsp;</a>&nbsp;&nbsp;&nbsp;(offers Bachelor of Science in Bioinformatics)</li>
<li><a href="http://www.gcuf.edu.pk/bioinfo.asp" target="_blank">GC University Faisalabad, Pakistan&nbsp;</a>&nbsp;&nbsp;&nbsp;(offers Bachelor of Science in Bioinformatics)- Thanks Rabeea Rasheed</li>
<li><em>Academia Sinica&nbsp;</em>, Taiwan&nbsp;<a href="http://tigpbp.iis.sinica.edu.tw/04-05FALL/BioinformaticsProgramIntroduction04.htm">Taiwan International Graduate Program: bioinformatics program</a></li>
<li><em>Amrita Vishwa Vidya Peetham (Deemed University)&nbsp;</em>, India&nbsp;<a href="http://amritapuri.amrita.edu/academics-as.htm">M.S. in bioinformatics</a></li>
<li><em>Chinese University of Hong Kong&nbsp;</em>, Hong Kong, China&nbsp;<br />Dept of Biology&nbsp;<br /><a href="http://www.bio.cuhk.edu.hk/bio/course3.htm">BIO4330 (bioinformatics and proteomics)</a></li>
<li><em>Beijing Univ</em>, Beijing, China<br />(supported by International Centre for Genetic Engineering and Biotechnology)&nbsp;<br />Xiaocheng Gu, Jingchu Luo, Sandor Ponger, one-week course&nbsp;<br /><a href="http://www.cbi.pku.edu.cn/meeting/icgeb/">molecular biology database and analysis tools, April 6-12, 1999&nbsp;</a>(broken link)&nbsp;<br /><a href="http://www.cbi.pku.edu.cn/ss/">Introduction to bioinformatics, XiaMen University, Jul 23- Aug 3, 2001.&nbsp;</a><br /><strong>COURSE&nbsp;</strong>: Jingchu Luo:&nbsp;<a href="http://abc.cbi.pku.edu.cn/">http://abc.cbi.pku.edu.cn/</a>&nbsp;<br />Huaiqiu Zhu:&nbsp;<a href="http://ctb.pku.edu.cn/main/Course.htm">http://ctb.pku.edu.cn/main/Course.htm</a></li>
<li><em>Bioinformatics Institute&nbsp;</em>, Singapore&nbsp;<br /><a href="http://www.bii.a-star.edu.sg/graduate/application/master.html">MSc in bioinformatics</a></li>
<li><em>Bioinformatics Institute of India</em>, India&nbsp;<br /><a href="http://www.bioinformaticscentre.org/">homepage</a></li>
<li><em>COMSATS Institute of Information Technology&nbsp;</em>, Pakistan&nbsp;<a href="http://www.ciit.edu.pk/ciit1/links/departments/bs_bio/bs_bio.htm">bachelor of science in bioinformatics</a></li>
<li>(The) Global Open University at Nagaland, India&nbsp;<br /><strong>DEGREE:</strong>&nbsp;M. Phil in Bioinformatics&nbsp;<br /><a href="http://nagaland.net.in/new_page_4.htm">http://nagaland.net.in/new_page_4.htm</a></li>
<li><em>(Univ of) Hong Kong&nbsp;</em>, Hong Kong, China&nbsp;<br /><strong>DEGREE:</strong>&nbsp;Bachelor of Science in Bioinformatics&nbsp;<a href="http://www.hku.hk/bruhk/bscbioinf.html">http://www.hku.hk/bruhk/bscbioinf.html</a>joint degree program by Dept of Biochemistry and Dept of Computer Science and Information.&nbsp;</li>
<li><em>Indian Institute of Chemical Technology&nbsp;</em>,Tarnaka, Hyderabad, India&nbsp;<br /><a href="http://www.iictindia.org/adbi/">advanced diploma in bioinformatics</a></li>
<li><em>Indian Institute of Information Technology&nbsp;</em>, Allahabad, India&nbsp;<br /><strong>COURSES:</strong>&nbsp;<a href="http://bi.iiita.ac.in/">http://bi.iiita.ac.in/</a>&nbsp;<br /><strong>DEGREES:</strong>&nbsp;Master of Technology (BioInformatics)&nbsp;<a href="http://iiita.ac.in/inner.php?conf=grad">http://iiita.ac.in/inner.php?conf=grad</a></li>
<li><em>Institute of Bioinformatics and Applied Biotechnology&nbsp;</em>, Bangalore, India&nbsp;<br /><a href="http://www.ibab.ac.in/pgcourse.htm">post graduate diploma courses</a></li>
<li><em>Jawaharlal Nehru Univ&nbsp;</em>, India&nbsp;<br /><a href="http://202.41.10.34/">bioinformatics center&nbsp;</a><br /><a href="http://202.41.10.34/bic_acad.html">advanced diploma in bioinformatics</a></li>
<li><em>KAIST</em>, South Korea&nbsp;<a href="http://biosys.kaist.ac.kr/">Department of BioSystems&nbsp;</a><br /><a href="http://biosys.kaist.ac.kr/English/program2/description.html">BiS531 (bioinformatics), BiS532 (bioinformatics laboratory)</a></li>
<li><em>Keio University, Shoman-Fujisawa campus</em>, Japan&nbsp;<a href="http://www.sfc.keio.ac.jp/english/academics/bi.html">graduate program in bioinformatics&nbsp;</a><br /><a href="http://www.bioinfo.sfc.keio.ac.jp/class/courses/index.html">course list (in Japanese)</a></li>
<li><em>Madurai Kamaraj university</em>, India&nbsp;<br /><a href="http://exon.tn.nic.in/">Bioinformatics Centre&nbsp;</a>, Dept of Biotechnology&nbsp;<br /><a href="http://www.biotechmku.org/course/">Advanced Diploma Course in Bioinformatics</a></li>
<li><em>(University of) Malaya&nbsp;</em>, Malaysia&nbsp;<br /><strong>COURSE&nbsp;</strong>:&nbsp;<a href="http://combi.um.edu.my/">http://combi.um.edu.my/</a></li>
<li><em>Mohammad Ali Jinnah University&nbsp;</em>, Pakistan&nbsp;<a href="http://www.jinnah.edu.pk/programs/bs_bio.php">bachelor of science in bioinformatics</a></li>
<li><em>Nanyang Technological University</em>, Singapore School of Computer Engineering&nbsp;<br /><strong>DEGREE:</strong>&nbsp;MSs&nbsp;<a href="http://www.ntu.edu.sg/sce/msc-bioinformatics-intro.asp">http://www.ntu.edu.sg/SCE/msc-bioinformatics-intro.asp</a></li>
<li><em>National Dong Hwa University&nbsp;</em>, Taiwan&nbsp;<a href="http://www.ndhu.edu.tw/~bioinformatics/">bioinformatics program</a></li>
<li><em>National Taiwan Normal University&nbsp;</em>, Taiwan&nbsp;<a href="http://bioinfo.biol.ntnu.edu.tw/">bioinformatics program</a></li>
<li><em>National Tsing Hua Univ&nbsp;</em>, Taiwan&nbsp;<br />JK Huang, PC Lyu&nbsp;<br /><a href="http://www.life.nthu.edu.tw/teaching/ls4643.html">LS4643 (bioinformatics)&nbsp;</a>;&nbsp;<a href="http://www.life.nthu.edu.tw/~bioinfo/biodata.html">LS5650 (biodatabase)</a></li>
<li><em>National University of Singapore&nbsp;</em>, Singapore&nbsp;<br /><strong>COURSE&nbsp;</strong>:&nbsp;<a href="http://www.comp.nus.edu.sg/~wongls/bp/courses.html">http://www.comp.nus.edu.sg/~wongls/bp/courses.html</a></li>
<li><em>National Yang Ming Univ&nbsp;</em>, Taiwan&nbsp;<br /><a href="http://binfo.ym.edu.tw/yang/">Ueng-Cheng Yang</a>,&nbsp;<br /><a href="http://binfo.ym.edu.tw/edu/">bioinformatics master program (in Chinese)</a></li>
<li><em>Pune Univ&nbsp;</em>, India&nbsp;<br />AS Kolaskar, RR Joshi&nbsp;<br /><a href="http://202.41.70.1/~diploma/syllabus/syllabus.html">BI101-105,201-205 (advanced diploma courses in bioinformatics)</a></li>
<li><em>St. Joseph's College of Information Technology and Management Studies</em>, Kerala State, India<a href="http://www.stjosephmallappally.org/courses.html#a9">Master of Science in Bio Informatics (M.Sc BI)</a></li>
</ul><div style="text-align: justify;">
<p><strong>Africa</strong><a name="Af" id="Af"></a></p>
<ul>
<li><a href="http://campus.ru.ac.za/index.php?action=category&amp;category=873">Rhodes University, South Africa offers an MSc. in Bioinformatics and Computational Molecular Biology</a></li>
<li><a href="http://www.sanbi.ac.za/Masters/">South African National Bioinformatics Institute (SANBI), offers an MSc. in Bioinformatics</a></li>
<li><em>Arab League Educational, Culture and Scientific Organisation&nbsp;</em>, Egypt&nbsp;<br />Robert Harper, Alessio Giacomini, Fredj Tekaia, M Mansour&nbsp;<br /><a href="http://shamrock.ebi.ac.uk:5555/egypt/">bioinformatics, Nov 27- Dec 3, 199?</a></li>
<li><em>Bionet Africa&nbsp;</em>, Kenya&nbsp;<a href="http://www.icipe.org/bionet/events.htm">training workshop on bioinformatics/computational biology, Sept 24-25, 2002</a></li>
<li><em>Centre de Biotechnologie de Sfax</em>, Sfax, Tunisia&nbsp;<br /><a href="http://anibal.webzzanine.net/bioinformatics/descript.htm">Bioinformatics and genome data analysis: March 24 - April 2, 2000</a></li>
<li><em>(Univ of) Ibadan&nbsp;</em>, Nigeria&nbsp;<br /><a href="http://www.wabw.org/may2003.htm">west African bioinformatics training course, May 26-June 7, 2003</a></li>
<li><em>(Institut) Pasteur Tunis</em>, Tunisia&nbsp;<br />A Benkahla, F Tekaia, A Rebai, E Yeramian&nbsp;<br /><a href="http://www.pasteur.fr/~tekaia/BCGA.html">Bioinformatics and Comparative Genome Analysis course, March 18-April 7, 2007</a></li>
<li><em>(Univ of) Sfax&nbsp;</em>, Tunisia&nbsp;<br />F Tekaia, A Rebai, H Haj Kacem, S Abdelhak, N Louhichi, H Ayadi&nbsp;<br /><a href="http://www-alt.pasteur.fr/~tekaia/deamicrobio.html">introduction to bioinformatics, May 26-31, 2003</a></li>
<li><em>(Univ of) Western Cape&nbsp;</em>, South Africa&nbsp;<br /><a href="http://www.sanbi.ac.za/Masters/">MSc and PhD programmes in Bioinformatics&nbsp;</a><br /><a href="http://stanford.sanbi.ac.za/">Stanford/South Africa Bio-medical Informatics Programme</a></li>
<li>Winston Hide, South African National Bioinformatics Institute&nbsp;<br /><a href="http://www.sanbi.ac.za/page2.html">introduction to bioinformatics&nbsp;</a><br /><a href="http://www.sanbi.ac.za/mrc/tdr2003.html">Regional training course on bioinformatics applied to tropical diseases In Africa , March 19 - April 4, 2003</a></li>
</ul><h3><br />Others:</h3><ul>
<li><em>(The) Hebrew University of Jerusalem&nbsp;</em>, Jerusalem, Israel&nbsp;<a href="http://bioinfo.md.huji.ac.il/marg/">Hanah Margalit</a>, Mol Genetics and Biotech&nbsp;<br /><a href="http://info.md.huji.ac.il/courses/bioinfo01/net-course.html">72677 (bioinformatics: computational sequence analysis of biological macromolecules)&nbsp;</a><br />67305 (research methods in computational biology)</li>
<li><em>Technion</em>, Israel<br />Benny Chor, Computer Science (CS)&nbsp;<br /><a href="http://www.cs.technion.ac.il/Labs/cbl/teaching/">236606 (algorithms for computational biology), 1998</a></li>
<li><em>(Univ of) Tehran&nbsp;</em>, Iran Iran Bioinformatics Center&nbsp;<br /><a href="http://www.ibc.ut.ac.ir/workshop/index.html">International training course: computer application in molecular biology, September 7-13, 2002</a></li>
<li><em>Tel Aviv Univ&nbsp;</em>, Israel<br />Ron Shamir, CS&nbsp;<br /><a href="http://www.math.tau.ac.il/~rshamir/ge/02/ge02.html">0368-4137-01 (analysis of gene expression data, DNA chips and gene networks, Spring 2002&nbsp;</a>,<br /><a href="http://www.math.tau.ac.il/~shamir/algmb/algmb98.html">0368.4020.01 (algorithms in molecular biology), Fall 1998&nbsp;</a><br />Racheli Kreisberg-Zakarin&nbsp;<br /><a href="http://www.tau.ac.il/~racheli/teaching/bioinfo/course_spring_2000.html">Bioinformatics, Spring 2000</a></li>
<li><em>Weizmann Institute of Science</em>, Israel&nbsp;<br /><a href="http://dapsas.weizmann.ac.il/bcd_course/course.html">introductory computer course for the life sciences&nbsp;</a>;&nbsp;<br />Vered Chalifa-Caspi, Jaime Prilusky,&nbsp;<br /><a href="http://bioinformatics.weizmann.ac.il/courses/prog/">programming course for bioinformatics and internet (I)&nbsp;</a>;&nbsp;<br />Jaime Prilusky, Marilyn Safran,&nbsp;<br /><a href="http://bioinformatics.weizmann.ac.il/courses/prog2/">programming course for bioinformatics and internet (II)&nbsp;</a>;&nbsp;<br />Gustavo Glusman, Michael Rebhan&nbsp;<br /><a href="http://bioinformatics.weizmann.ac.il/courses/BCG/">bioinformatics &amp; computational genomics, Spring 1998</a></li>
</ul><h3><br />Advanced Courses and Papers</h3><ul>
<li><a href="http://www.bii.a-star.edu.sg/education/phdprogram/index.asp">BioInformatics Institute, Singapore&nbsp;</a>&nbsp;&nbsp;&nbsp;(Ph.D Program)</li>
<li><a href="http://linkage.rockefeller.edu/wli/gene/">Bibliography on Computational Gene Recognition&nbsp;</a>&nbsp;&nbsp;&nbsp;(Rockefeller University)</li>
<li><a href="http://www.cse.ucsc.edu/~karplus/regular-ismb-95/regular-ismb-95.html">Evaluating Regularizers for Estimating Distributions of Amino Acids&nbsp;</a>&nbsp;&nbsp;&nbsp;(Paper by Kevin Karplus, UC Santa Cruz)</li>
<li><a href="http://www.bcb.iastate.edu/">Iowa State University, PhD Program in Bioinformatics and Computatinal Biology&nbsp;</a>&nbsp;&nbsp;&nbsp;(Ames, Iowa)</li>
<li><a href="http://bioinformatics.weizmann.ac.il/courses/prog/">Perl Programing Course for Bioinformatics and Internet&nbsp;</a>&nbsp;&nbsp;&nbsp;(Weizmann Institute of Science, Israel)</li>
<li><a href="http://honorsnewark.rutgers.edu/bio/Biology/computational.htm">Rutgers University, PhD Program in Computational Biology&nbsp;</a>&nbsp;&nbsp;&nbsp;(Newark, New Jersey)</li>
<li><a href="http://www.cse.ucsc.edu/research/compbio/sam.html">Sequence Alignment and Modeling System&nbsp;</a>&nbsp;&nbsp;&nbsp;(Documentation for SAM)</li>
<li><a href="http://www.cbs.dtu.dk/phdcourse/index.html">Technical University of Denmark, PhD Course in Biological Sequence Analysis and Protein Modeling</a></li>
<li><a href="http://bioinformatics.bcgsc.ca/">Training Program for Bioinformaticians in Health Research - Vancouver&nbsp;</a>&nbsp;&nbsp;&nbsp; (M.Sc. and Ph.D. Programs)</li>
<li><a href="http://www.cbil.upenn.edu/UPCB/graduate.html">University of Pennsylvania&nbsp;</a>&nbsp;&nbsp;&nbsp;(Doctoral Program and&nbsp;<a href="http://www.cbil.upenn.edu/UPCB/postdoc.html">Postdoctoral Program&nbsp;</a>)</li>
<li><a href="http://www-hto.usc.edu/">USC&nbsp;</a>&nbsp;&nbsp;&nbsp;(PhD Program)</li>
<li><a href="http://www.techfak.uni-bielefeld.de/bcd/">Virtual School of Natural Sciences&nbsp;</a>&nbsp;&nbsp;&nbsp;(Online Courses)</li>
<li><a href="http://www.cse.dmu.ac.uk/~hseker/BHG_PhD.htm">De Montfort University, U.K, BioHealth Informatics research team offers MPhil and PhD studies in various computational biology and health related subjects</a></li>
</ul><p>&nbsp;</p><p>If your university is not there in the list, please let me know info_at_bioinformaticsonline.com</p></div></div>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/11313/linux-sort-commands-for-bioinformatics</guid>
	<pubDate>Sat, 31 May 2014 15:41:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/11313/linux-sort-commands-for-bioinformatics</link>
	<title><![CDATA[Linux Sort Commands for Bioinformatics]]></title>
	<description><![CDATA[<p>Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space efficiency GNU sort stands at the top. It can sort a 20Gb file with less than 2Gb memory. It is not trivial to implement so powerful a sort by yourself.</p><p>sort a space-delimited file based on its first column, then the second if the first is the same, and so on:<br />sort input.txt</p><p>sort a huge file (GNU sort ONLY):<br />sort -S 1500M -t $HOME/tmp input.txt &gt; sorted.txt</p><p>sort starting from the third column, skipping the first two columns:<br />sort +2 input.txt</p><p>sort the second column as numbers, descending order; if identical, sort the 3rd as strings, ascending order:<br />sort -k2,2nr -k3,3 input.txt</p><p>sort starting from the 4th character at column 2, as numbers:<br />sort -k2.4n input.txt</p><p>More Linxu sort command information<br /><br />If you have any sort commands you'd like to share, please add them to our comments section below. For more help, you can also type:<br /><br />man sort<br /><br />or<br /><br />sort --help<br /><br />on your Unix/Linux system.</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide</guid>
	<pubDate>Thu, 28 May 2015 21:10:12 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide</link>
	<title><![CDATA[One page R survival guide !!]]></title>
	<description><![CDATA[<p><span style="font-style: normal; color: #000000; float: none;">There any many of the documents have been developed and tested by scientist around the world. I found this one really useful. The data used is available for download as<span>&nbsp;</span></span><a href="http://onepager.togaware.com/data.zip">data.zip</a><span style="font-style: normal; color: #000000; float: none;">.</span></p><p><span style="font-style: normal; color: #000000; float: none;">Reference@http://www.datasciencecentral.com/profiles/blogs/one-page-r-a-survival-guide-to-data-science-with-r</span></p><ul>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Templates for the Data Scientist<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">A Template for Preparing Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/DataO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DataO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">A Template for Building Models:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/ModelsO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ModelsO.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Getting Started as a Data Scientist<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Getting Started with R and Rattle:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/StartL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/StartG.pdf">Laboratory</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Introducing and Interacting with R:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/IntroRL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/IntroRR.pdf">Laboratory</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">BasicR - OnePage(R) - Writing R scripts</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Dealing With Data<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Read Data into R:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/ReadO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ReadO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Explore and Summarise Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/SummaryO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/SummaryO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Transform Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/TransformO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/TransformO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/DateTimeRB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Dealing with Dates and Time:</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/DateTimeR.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/DateTimeR.R">R</a>) Dates and Time</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Visualising Data with GGPlot2:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/GGPlot2O.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/GGPlot2O.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Visualising Data with Maps</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/MapsO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/MapsO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Spatial<span>&nbsp;</span>(R) Spatial Analysis</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Handling Big Data</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/BigDataO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/BigData.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Descriptive Analytics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Cluster Analysis:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/ClustersL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ClustersO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/Clusters.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Association Analysis:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/ARulesL.pdf">Lecture</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Predictive Analytics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Decision Trees:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/DTreesL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesO.R">R</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesG.pdf">Rattle</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Ensembles of Decision Trees:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/EnsemblesL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EnsemblesO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EnsemblesO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">SVM (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">KernLab (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">NeuralNetworks (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">NNet (R)</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Model Delivery<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Evaluating Models:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/EvaluationO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EvaluationO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Evaluation (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Scoring (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">PMML (R) Exporting Models for Deployment</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Advanced Topics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Text Mining:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/TextMiningO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/TextMiningO.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Advanced R Topics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/PlotsB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Plots</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Plots.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Plots.R">R</a>) Miscellaneous Plots</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/FunctionsB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Functions</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Functions.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Functions.R">R</a>) Writing Functions in R</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/ParallelB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Parallel</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Parallel.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Parallel.R">R</a>) Parallel Execution</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Packaging (R) Pulling it Together into a Package</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Doing R with Style:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/StyleO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/StyleO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Literate Data Mining with KnitR:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/KnitRL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/KnitRO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/KnitRO.R"></a></li>
</ol></li>
</ul>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/11399/next-generation-sequencing-in-r-or-bioconductor-environment</guid>
	<pubDate>Mon, 02 Jun 2014 18:03:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/11399/next-generation-sequencing-in-r-or-bioconductor-environment</link>
	<title><![CDATA[Next generation sequencing in R or bioconductor environment]]></title>
	<description><![CDATA[<p>There are many R software and bioconductor packages for NGS data analysis, some of them are as follows</p><h3><a name="TOC-Biostrings" id="TOC-Biostrings"></a>Biostrings</h3><p>The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It contains many speed and memory effective string containers, string matching algorithms, and other utilities, for fast manipulation of large sets of biological sequences. The objects and functions provided by Biostrings form the basis for many other sequence analysis packages. <a href="http://bioconductor.org/packages/release/bioc/html/Biostrings.html">Documentation</a></p><div><div style="text-align: left;"><div style="color: #000000;"><h4><a name="TOC-IRanges-Overview" id="TOC-IRanges-Overview"></a>IRanges Overview</h4><p>IRanges provides the low-level infrastructure and containers for handling sets of integer ranges within Bioconductor's BioC-Seq domain. Its classes and methods provide support for many more high-level packages like GenomicRanges, ShortRead, Rsamtools, etc. <a href="http://bioconductor.org/packages/release/bioc/html/IRanges.html">Documentation</a></p><div style="text-align: right;"><div style="text-align: left;"><h4><a name="TOC-GenomicRanges-Overview" id="TOC-GenomicRanges-Overview"></a>GenomicRanges Overview</h4><p>The <em>GenomicRanges</em> package serves as the foundation for representing genomic locations within the Bioconductor project. It is built upon the <em>IRanges</em> infrastructure and defines three major data containers - <em>GRanges, GRangesList</em> and <em>GappedAlignments</em> - which are supporting other important BioC-Seq packages including <em>ShortRead, Rsamtools, rtracklayer, GenomicFeatures</em> and <em>BSgenome</em>.&nbsp; Compared to the IRanges container, the GRanges/<em>GRangesList</em> classes are more flexible and extensible to store additional information about sequence ranges, such as chromosome identifiers (sequence space), strand information and annotation data. <a href="http://bioconductor.org/packages/release/bioc/html/GenomicRanges.html">Documentation</a></p></div></div></div></div><h3><a name="TOC-Motif-Discovery" id="TOC-Motif-Discovery"></a>Motif Discovery</h3><h4><a name="TOC-cosmo" id="TOC-cosmo"></a>cosmo</h4><p>The cosmo package allows to search a set of unaligned DNA sequences for a shared motif that may function as transcription factor binding site. The algorithm extends the popular motif discovery tool MEME (Bailey and Elkan, 1995) in that it allows the search to be supervised by specifying a set of constraints that the motif to be discovered must satisfy. <a href="http://bioconductor.org/packages/release/bioc/html/cosmo.html">Documentation</a></p></div><div>
<p><span></span><span></span></p>
<div style="color: #0000ff;"><h4><a name="TOC-BCRANK" id="TOC-BCRANK"></a>BCRANK</h4><p>BCRANK is a method that takes a ranked list of genomic regions as input and outputs short DNA sequences that are overrepresented in some part of the list. The algorithm was developed for detecting transcription factor (TF) binding sites in a large number of enriched regions from high-throughput ChIP-chip or ChIP-seq experiments, but it can be applied to any ranked list of DNA sequences. Documentation</p>
<p><a href="http://bioconductor.org/packages/release/bioc/html/BCRANK.html"></a></p>
<p>rGADEM: <a href="http://bioconductor.org/packages/devel/bioc/html/rGADEM.html">Documentation</a></p><p>MotIV: <a href="http://bioconductor.org/packages/devel/bioc/html/MotIV.html">Documentation</a></p></div><h3><a name="TOC-ShortRead" id="TOC-ShortRead"></a>ShortRead</h3><p>The ShortRead package provides input, quality control, filtering, parsing, and manipulation functionality for short read sequences produced by high throughput sequencing technologies. While support is provided for many sequencing technologies, this package is primairly focused on Solexa/Illumina reads. <a href="http://bioconductor.org/packages/release/bioc/html/ShortRead.html">Documentation</a></p><h3><a name="TOC-Rsamtools" id="TOC-Rsamtools"></a>Rsamtools</h3><p>Rsamtools provides functions for parsing and inspecting samtools BAM formatted binary alignment data. SAM/BAM is quickly becoming a universal standard alignment format, and is now supported by a wide variety of alignment tools. <a href="http://bioconductor.org/help/bioc-views/2.7/bioc/html/Rsamtools.html">Documentation</a></p>
<p><a href="http://samtools.sourceforge.net/">Samtools Website</a><br /> <a href="http://bio-bwa.sourceforge.net/">BWA (Burrows-Wheeler Alignment) Website</a><br /><span style="color: #0000ff;"></span></p>
<div style="color: #000000;">&nbsp;</div></div><div>
<p><span style="color: #000000;">Additional tools for SNP analysis:&nbsp;</span></p>
<p><a href="http://bioconductor.org/help/bioc-views/release/bioc/html/snpMatrix.html">snpMatrix</a></p><h3><a name="TOC-BSgenome" id="TOC-BSgenome"></a>BSgenome</h3><p>BSgenome provides an object oriented infrastructure for interacting with a Biostring based genome sequence. BSgenome packages exist for many common genomes, and can be created to represent custom genomes. See the "How to forge a BSgenome data package" Vignette for instructions to create a new BSgenome package if a prebuilt package does not exist for your organism. <a href="http://bioconductor.org/packages/release/bioc/html/BSgenome.html">Documentation</a></p><h3><a name="TOC-rtracklayer" id="TOC-rtracklayer"></a>rtracklayer</h3><p>rtracklayer provides an interface for exporting annotation feature data to various genome browsers and file formats (such as GFF). See the Small RNA Profiling exercise for an example of using rtracklayer to visualize alignment coverage. <a href="http://bioconductor.org/packages/release/bioc/html/rtracklayer.html">Documentation</a></p><h3><a name="TOC-biomaRt" id="TOC-biomaRt"></a>biomaRt</h3><p>The biomaRt package, provides an interface to a growing collection of databases implementing the BioMart software suite (http:// www.biomart.org). The package enables online retrieval of large amounts of data in a uniform way without the need to know the underlying database schemas. This data is retrieved automatically via the Internet, so it's recommended that you cache the data locally, or check versions if your code will be adversely affected by updates to these data. <a href="http://bioconductor.org/packages/release/bioc/html/biomaRt.html">Documentation</a></p><h3><a name="TOC-ChIP-Seq-Analysis-Packages" id="TOC-ChIP-Seq-Analysis-Packages"></a>ChIP-Seq Analysis Packages</h3><p>Bioconductor provides various packages for analyzing and visualizing ChIP-Seq data. Only a small selection of these packages is introduced here. Additional useful introductions to this topic are: <a href="http://www.bioconductor.org/workshops/2009/SeattleJan09/ChIP-seq/">BioC ChIP-seq Case Study</a> and BioC <a href="http://www.bioconductor.org/help/course-materials/2009/SeattleNov09/ChIP-seq/">ChIP-Seq</a>.</p><h4><a name="TOC-chipseq" id="TOC-chipseq"></a>chipseq</h4><p>The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. <a href="http://bioconductor.org/packages/release/bioc/html/chipseq.html">Documentation</a></p><h4><a name="TOC-BayesPeak" id="TOC-BayesPeak"></a>BayesPeak</h4><p>BayesPeak is a peak calling package for identifying DNA binding sites of proteins in ChIP-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistical methods. The following sample code introduces the identification of peaks with the BayesPeak package as well as the incorporation of read coverage information obtained by the chipseq package. <a href="http://bioconductor.org/packages/release/bioc/html/BayesPeak.html">Documentation</a> [ <a href="http://www.biomedcentral.com/1471-2105/10/299">Publication</a> ]</p><h4><a name="TOC-PICS" id="TOC-PICS"></a>PICS</h4><p>The PICS package applies probabilistic inference to aligned-read ChIP-Seq data in order to identify regions bound by transcription factors. PICS identifies enriched regions by modeling local concentrations of directional reads, and uses DNA fragment length prior information to discriminate closely adjacent binding events via a Bayesian hierarchical t-mixture model. The following sample code uses the test data set from the above BayesPeak package in order to compare the results from both methods by identifying their consensus peak set. <a href="http://www.bioconductor.org/packages/release/bioc/html/PICS.html">Documentation</a> [ <a href="http://www.hubmed.org/display.cgi?uids=20528864">Publication</a> ]</p><h4><a name="TOC-ChIPpeakAnno" id="TOC-ChIPpeakAnno"></a>ChIPpeakAnno</h4><p>The ChIPpeakAnno package provides. batch annotation of the peaks identified from either ChIP-seq or ChIP-chip experiments. It includes functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as most conserved elements and other transcription factor binding sites supplied by users. The package leverages the biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat packages. <a href="http://bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html">Documentation</a></p><h4><a name="TOC-Additional-ChIP-Seq-Packages" id="TOC-Additional-ChIP-Seq-Packages"></a>Additional ChIP-Seq Packages</h4><p>DiffBind: <a href="http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html">Documentation</a></p><p>MOSAICS: <a href="http://bioconductor.org/packages/devel/bioc/html/mosaics.html">Documentation</a></p><p>iSeq: <a href="http://bioconductor.org/packages/release/bioc/html/iSeq.html">Documentation</a></p><p>ChIPseqR: <a href="http://bioconductor.org/packages/release/bioc/html/ChIPseqR.html">Documentation</a></p><p>ChiPsim: <a href="http://bioconductor.org/packages/release/bioc/html/ChIPsim.html">Documentation</a></p><p>CSAR: <a href="http://www.bioconductor.org/packages/devel/bioc/html/CSAR.html">Documentation</a></p><p>ChIP-Seq Pipeline: <a href="http://www.bioconductor.org/packages/release/bioc/html/PICS.html">PICS</a>, rGADEM and MotIV (<a href="http://www.rglab.org/pics-and-bioconductor/">developer web site</a>)</p><p>SPP: <a href="http://compbio.med.harvard.edu/Supplements/ChIP-seq/">ChIP-seq processing pipeline</a></p><p><a href="http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.html">SPP Tutorial</a></p><p><a href="http://liulab.dfci.harvard.edu/MACS/index.html">MACS</a></p><p><a href="http://gmdd.shgmo.org/Computational-Biology/ChIP-Seq/download/SIPeS">SIPeS</a></p><h3><a name="TOC-RNA-Seq-Analysis" id="TOC-RNA-Seq-Analysis"></a>RNA-Seq Analysis</h3><h4><a name="TOC-Counting-Reads-that-Overlap-with-Annotation-Ranges-" id="TOC-Counting-Reads-that-Overlap-with-Annotation-Ranges-"></a>Counting Reads that Overlap with Annotation Ranges&nbsp;</h4><p>The GenomicRanges package provides support for importing into R short read alignment data in BAM format (via Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can quantify the number of reads aligning to annotated genomic regions. The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome. The two main functions for read counting provided by this infrastructure are <span>countOverlaps <span style="color: #000000;"><span>and</span></span> summarizeOverlaps</span>. For their proper usage, it is important to read the corresponding <a href="http://www.bioconductor.org/packages/devel/bioc/vignettes/GenomicRanges/inst/doc/summarizeOverlaps.pdf">PDF manual</a>. <a href="http://bioconductor.org/packages/release/bioc/html/GenomicRanges.html">Documentation</a></p><h4><a name="TOC-Differential-Gene-Expression-Analysis-with-DESeq" id="TOC-Differential-Gene-Expression-Analysis-with-DESeq"></a>Differential Gene Expression Analysis with DESeq</h4><p>The DESeq package contains functions to call differentially expressed genes (DEGs) in count tables based on a model using the negative binomial distribution. It expects as input a data frame with the raw read counts per region/gene of interest (rows) for each test sample (columns).&nbsp; Such a count table can be imported into R or generated from BAM alignment files using the <span>countOverlaps</span> function as introduced above. <a href="http://www.bioconductor.org/packages/release/bioc/html/DESeq.html">Documentation</a></p><h4><a name="TOC-Differential-Gene-Expression-Analysis-with-edgeR" id="TOC-Differential-Gene-Expression-Analysis-with-edgeR"></a>Differential Gene Expression Analysis with edgeR</h4><p>The edgeR package uses empirical Bayes estimation and exact tests based on the negative binomial distribution to call differentially expressed genes (DEGs) in count data.&nbsp;</p>
<p><a href="http://www.bioconductor.org/packages/release/bioc/html/edgeR.html">Documentation</a></p>
<p><span style="color: #000000;">A variety of additional R packages are available for normalizing RNA-Seq read count data and identifying differentially expressed genes (DEG): <br /> </span></p><p><a href="http://bioconductor.org/packages/devel/bioc/html/easyRNASeq.html">easyRNASeq</a> (simplifies read counting per genome feature)</p><p><a href="http://www.bioconductor.org/packages/release/bioc/html/DEXSeq.html">DEXSeq</a> (Inference of differential exon usage);&nbsp;<a href="http://www.bioconductor.org/packages/release/data/experiment/html/parathyroidSE.html">parathyroidSE</a> explains how to generate exon read counts in R</p><p><a href="http://bioconductor.org/packages/release/bioc/html/DEGseq.html">DEGseq</a></p><p><a href="http://www.bioconductor.org/packages/release/bioc/html/baySeq.html">baySeq</a> (also see: <a href="http://www.bioconductor.org/packages/release/bioc/html/segmentSeq.html">segmentSeq</a>)</p><p><a href="http://bioconductor.org/packages/release/bioc/html/Genominator.html">Genominator</a> (<a href="http://www.hubmed.org/display.cgi?uids=20167110">Bullard et al. 2010</a>)</p><div style="text-align: right;"><div style="text-align: left;"><h4><a name="TOC-Detection-of-Alternative-Splice-Junctions" id="TOC-Detection-of-Alternative-Splice-Junctions"></a>Detection of Alternative Splice Junctions</h4>
<p><span style="color: #000000;">Another utility of RNA-Seq experiments is the analysis of splice junctions. The following software suggestions provide this utility:</span></p>
<p><a href="http://woldlab.caltech.edu/rnaseq/">ERANGE<br /> </a><a href="http://tophat.cbcb.umd.edu/">TopHat</a></p><p><a href="http://biogibbs.stanford.edu/%7Ekinfai/SpliceMap/">SpliceMap</a></p><p><a href="http://solidsoftwaretools.com/gf/project/splitseek/">SplitSeek</a></p><h3><a name="TOC-DNA-Methylation-Data-Analysis" id="TOC-DNA-Methylation-Data-Analysis"></a>DNA-Methylation Data Analysis</h3><div><ul>
<li><span style="font-size: 10pt;"><a href="http://www.bioconductor.org/help/course-materials/2012/BiocEurope2012/mattia_pelizzola_methylPipe.pdf">methylPipe</a></span></li>
<li><span style="font-size: 10pt;"><a href="http://www.bioconductor.org/packages/devel/bioc/html/bsseq.html">bsseq</a></span></li>
<li><a href="http://www.bioconductor.org/packages/devel/bioc/html/BiSeq.html">BiSeq</a></li>
<li>Much more under <a href="http://www.bioconductor.org/packages/devel/BiocViews.html#___DNAMethylation">BiocViews</a></li>
</ul></div></div></div><h3><a name="TOC-HT-Seq-Data-Visualization" id="TOC-HT-Seq-Data-Visualization"></a>HT-Seq Data Visualization</h3>
<p><a href="http://www.bioconductor.org/packages/release/bioc/html/ggbio.html">ggbio</a>: ggplot2 extension for genomics data (<a href="http://tengfei.github.com/ggbio/">online manual</a>) <a href="http://www.bioconductor.org/packages/devel/bioc/html/Gviz.html">Gviz</a>:&nbsp;Plotting data and annotation information along genomic coordinates <a href="http://bioconductor.org/packages/release/bioc/html/HilbertVis.html">HilbertVis</a>: Hilbert genome plots</p>
<p><a href="http://bioconductor.org/packages/release/bioc/html/GenomeGraphs.html">GenomeGraphs</a>: Plotting genomic information from Ensembl</p><p><a href="http://www.hubmed.org/display.cgi?uids=18507856">TileQC</a>: Flow Cell Quality Visualization</p><p><a href="http://bioconductor.org/packages/release/bioc/html/rtracklayer.html">rtracklayer</a>: R interface to genome browsers</p><p><a href="http://genoplotr.r-forge.r-project.org/">genoPlotR</a>: Plotting maps of genes and genomes</p><p><a href="http://bioconductor.org/packages/release/bioc/html/Genominator.html">Genominator</a>: Tools for storing, accessing, analyzing and visualizing genomic data.</p><p>&nbsp;</p><p>To install all packages</p><blockquote><p>source("http://bioconductor.org/biocLite.R")<br />biocLite()<br />biocLite(c("ShortRead", "Biostrings", "IRanges", "BSgenome", "rtracklayer", "biomaRt", "chipseq", "ChIPpeakAnno", "Rsamtools", "BayesPeak", "PICS", "GenomicRanges", "DESeq", "edgeR", "leeBamViews", "GenomicFeatures", "BSgenome.Celegans.UCSC.ce2"))</p></blockquote></div>]]></description>
	<dc:creator>John Parker</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42497/genome-assembly-training-tutorial-at-galaxy</guid>
	<pubDate>Sun, 27 Dec 2020 05:25:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42497/genome-assembly-training-tutorial-at-galaxy</link>
	<title><![CDATA[Genome assembly training tutorial at Galaxy !]]></title>
	<description><![CDATA[<p>In this tutorial we assemble and annotate the genome of <em>E. coli</em> strain <a href="http://cgsc2.biology.yale.edu/Strain.php?ID=8232">C-1</a>. This strain is routinely used in experimental evolution studies involving bacteriophages. For instance, now classic works by Holly Wichman and Jim Bull (<a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html#Bull1997">Bull 1997</a>, <a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html#Bull1998">Bull 1998</a>, <a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html#Wichman1999">Wichman 1999</a>) have been performed using this strain and bacteriophage phiX174.</p><p>Address of the bookmark: <a href="https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html" rel="nofollow">https://training.galaxyproject.org/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/11494/postdoc-position-at-centre-mediterraneen-de-medecine-moleculaire-nice-france</guid>
  <pubDate>Wed, 04 Jun 2014 07:20:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoc position at Centre Méditerranéen de Médecine Moléculaire - Nice - France]]></title>
  <description><![CDATA[
<p>The research group of Dr. Michele Trabucchi at the Centre Méditerranéen de Médecine Moléculaire (C3M) at INSERM U1065 (University of Nice Sophia-Antipolis, France) is seeking candidates for a Postdoctoral fellow position to start on October 2014 for 3 years funded by FRM (Fondation pour la Recherche Médicale).<br />The broad interest of the lab is in understanding the expression control and function of small RNAs in activated myeloid cells (visit our webpage to check research interests and publications of the group : http://www.unice.fr/c3m/EN/Equipe10.html ). </p>

<p>The work will focus on the functional studies of small RNAs by using next-generation sequencing approaches.<br /> <br />Candidates should hold a Ph.D. degree and have strong background in bioinformatics.<br />The University of Nice Sophia-Antipolis provides a wide range of facilities and training essential for biomedical research.</p>

<p>Interested applicants should send a PDF with a cover letter stating research interests and qualifications, an updated CV, a summary of previous research experience and contact information for two references to Michele Trabucchi ( mtrabucchi@unice.fr )</p>

<p>Homepage: http://www.unice.fr/c3m/EN/Equipe10.html</p>
]]></description>
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