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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/39612?offset=440</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/23959/bioinformatics-jokes</guid>
	<pubDate>Fri, 21 Aug 2015 01:26:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/23959/bioinformatics-jokes</link>
	<title><![CDATA[Bioinformatics Jokes !!]]></title>
	<description><![CDATA[<p>Why was the Bioinformatics fired from his job?</p><p>A: He was getting too Sassy.</p><p>&nbsp;</p><p>What did the bioinformatician say when he found out his team stopped using version control?</p><p>A: Y&rsquo;all better Git!</p><p>&nbsp;</p><p>Why did the computational biologist stay home from work?</p><p>A: He had a code!</p><p>&nbsp;</p><p>Why was the bioinformatician's paper was rejected?</p><p>A: Journal thought it seemed scripted.</p><p>&nbsp;</p><p>How can you tell that a Bioinformatics is working?</p><p>A: You can hear him Grunting!</p><p>&nbsp;</p><p>Why bioinformatician always silence?</p><p>A: Because bioinformatician calmly whisper, &ldquo;SSH&rdquo;</p><p>&nbsp;</p><p>Why was the bioinformatician always so sleepy?</p><p>A: He/She wasn&rsquo;t given any Java.</p><p>&nbsp;</p><p>Why did the program/software hanged?</p><p>A: Because genome float.</p><p>&nbsp;</p><p>Why was the class upset that its parent died?</p><p>A: Because it wouldn&rsquo;t be getting the inheritance!</p><p>&nbsp;</p><p>Why did bioinformatician always works on the command line?</p><p>A: Because they don't want to scare you with huge amount of data!</p><p>&nbsp;</p><p>Why did the bioinformatician attend the gay pride parade?</p><p>A: They supported polymorphism.</p><p>&nbsp;</p><p>Why did bioinformatician prefer awk, PerlOneliner?</p><p>A: Because even computer can't handle to load the data.</p><p>&nbsp;</p><p>Why don&rsquo;t bioinformatician get along with others?</p><p>A: They&rsquo;re too MEAN.</p><p>&nbsp;</p><p>Why computational biologist are cool?</p><p>A: Because they are scripted!!</p><p>&nbsp;</p><p>Why they talk $ unzip; strip; touch; finger; grep; mount; fsck; more; yes; fsck; fsck; umount; clean; sleep;</p><p>A: Ah, Ohhh, dude, these are *NIX commands</p><p>&nbsp;</p><p>Did they really hack genome?</p><p>A: Yes, I guess so.</p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31278/metapred2cs</guid>
	<pubDate>Fri, 03 Mar 2017 05:15:07 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31278/metapred2cs</link>
	<title><![CDATA[MetaPred2CS]]></title>
	<description><![CDATA[<p style="text-align: justify;"><strong>MetaPred2CS Web server&nbsp;</strong>is a meta-predictor based on&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pubmed/17160063">Support Vector Machine (SVM)</a>&nbsp;that combines 6 individual sequence based protein-protein interaction prediction methods to predict&nbsp;<strong>prokaryotic two-component system&nbsp;</strong>protein-protein interactions (PPIs). The methods implemented in MetaPred2CS are 2 co-evolutionary methods:&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pubmed/11933068">in-silico two hybrid (i2h)</a>&nbsp;and&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pubmed/11707606">mirror tree (MT)</a>&nbsp;methods and 4 genomics context based methods:&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pubmed/15947018">phylogenetic profiling (PP)</a>,&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pubmed/10573422">gene fusion (GF)</a>,&nbsp;<a href="http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.0030043">gene neighbourhood (GN)</a>&nbsp;and and&nbsp;<a href="http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.0030043">gene operon methods (GO)</a>.</p>
<p>&nbsp;http://metapred2cs.ibers.aber.ac.uk/</p><p>Address of the bookmark: <a href="https://github.com/martinjvickers/MetaPred2CS" rel="nofollow">https://github.com/martinjvickers/MetaPred2CS</a></p>]]></description>
	<dc:creator>Manisha Mishra</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42955/post-doctoral-position-scientist-mfd-in-bioinformatics</guid>
  <pubDate>Mon, 15 Mar 2021 11:34:23 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-doctoral position / Scientist (m/f/d) in Bioinformatics]]></title>
  <description><![CDATA[
<p>The Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V. in Dortmund is looking for a Post-doctoral position / Scientist (m/f/d) in Bioinformatics</p>

<p>More at</p>

<p>https://www.isas.de/files/redaktion/jobs/2021/18.60.1_Postdoc_deNBI_06_21_AS.pdf</p>

<p>https://www.isas.de/en/news/062021-post-doctoral-position-scientist-mfd-in-bioinformatics</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25287/postdoc-position-in-bioinformatics-irccs-milan-italy</guid>
  <pubDate>Wed, 25 Nov 2015 03:38:38 -0600</pubDate>
  <link></link>
  <title><![CDATA[PostDoc position in Bioinformatics - IRCCS - Milan - Italy]]></title>
  <description><![CDATA[
<p>PostDoc position in Bioinformatics</p>

<p>A full-time post-doctoral position for a bioinformatician with experience in managing and analyzing NGS data is available in the Laboratory of Molecular Cardiology at Policlinico San Donato-IRCCS, Milan, Italy. For lab publications, see: http://scholar.google.it/citations?user=wAPKO9wAAAAJ&amp;hl=it&amp;oi=ao</p>

<p>https://www.researchgate.net/profile/Fabio_Martelli</p>

<p>The goal of the project is investigating the regulation and functional role of non coding RNAs in tissue response to hypoxia and ischemia.</p>

<p>We are looking for a candidate that is going to interact with biologists and bioinformaticians to manage and analyze NGS data (mostly RNA-seq) and microarray data.</p>

<p>The successful candidate must have a minimum of 3 years experience in dealing with NGS data, a good command of English and written communication and at least 2 relevant publications as first author in peer reviewed international journals. The candidate is expected to interact with a small international group and to be able also to work independently. Knowledge of programming is a definitive plus, as well as a good statistical background and/or wet molecular biology skills.</p>

<p>Salary is proportional to experience and to the publication record (up to 38 000euro/year before taxes and retirement contribution i.e. IRPEF and INPS).</p>

<p>Please, send your CV by e-mail to Fabio Martelli:</p>

<p>fabio.martelli@grupposandonato.it</p>

<p>Location: Laboratory of Molecular Cardiology at Policlinico San Donato-IRCCS, Milan, Italy.<br />Link: https://www.researchgate.net/profile/Fabio_Martelli<br />Contact person: Fabio Martelli<br />Contact email: fabio.martelli@grupposandonato.it</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25301/jrf-bioinformatics-at-cuk</guid>
  <pubDate>Sat, 28 Nov 2015 03:26:21 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at CUK]]></title>
  <description><![CDATA[
<p>JRF job opportunity in Central University of Kerala (CUK) on temporary basis </p>

<p>Project Title : "Targeting TAL effector mediated susceptibility for durable and broad-spectrum resistance to bacterial blight in Rice"</p>

<p>No. of Post : 01</p>

<p>Qualification : MSc in any subject under Life Science or Bioinformatics/ B.Tech in Bioinformatics + 1 yr experience </p>

<p>Stipend : Rs. 14,000/-</p>

<p>How to apply</p>

<p>Interested candidates are requested to send their applications explaining their interest in the position with an updated CV to Dr. Ginny Antony, Assistant Professor, Department of Plant Science, School of Biological Sciences, Central University of Kerala, Padannakkad, Kasaragod, Kerala - 671 314 email: ginnycuk2013@gmail.com on or before 20th December, 2015.</p>

<p>More at http://cukerala.ac.in/index.php?option=com_content&amp;view=article&amp;id=1022:applications-invited-for-the-post-of-jrf-department-of-plant-science&amp;catid=106&amp;Itemid=593&amp;lang=en</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon</guid>
	<pubDate>Thu, 03 Dec 2015 05:52:09 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon</link>
	<title><![CDATA[ArrayGen Next Generation Genome Browser Coming Soon !!!]]></title>
	<description><![CDATA[<p>The ANG genome browser is a visualization tool, developed by ArrayGen Technologies. This is a fast and an efficient genome browser, built with Javafx and Java swing. ANG genome browser was built for latest next generation sequencing data analysis. It is platform independent and much simpler to use.</p><p>The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM and it can be integrated with other browsers or tools for analysis of genome.</p>]]></description>
	<dc:creator>ArrayGen Technologies</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25674/post-doc-position-at-labgem-evry-france</guid>
  <pubDate>Fri, 11 Dec 2015 06:24:00 -0600</pubDate>
  <link></link>
  <title><![CDATA[Post-doc position at LABGeM - Evry, France]]></title>
  <description><![CDATA[
<p>The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is developing integrated approaches which combines bioinformatics methods based (i) on genomic and metabolic contexts, (ii) on an orignal metabolic network representation and (iii) on a structural classification of active sites for the discovery of new metabolic enzymatic activities.</p>

<p>We are hiring a post-doctoral fellow for the development of innovative bioinformatics methods to explore metabolic networks and enzyme families. These methods will be based on protein family analysis and graph approaches combining genomic and metabolic contexts.</p>

<p>For more details, please see this link : http://goo.gl/tHQOqk</p>

<p>Qualifications:<br />PhD degree in bioinformatics or computational biology<br />- Previous experience in network or protein family analysis<br />- Programming skills (C/C++, Python, Java) and in common biostatistical analyses<br />- Team player, innovative and creative thinking, good oral and written communication skills</p>

<p>24 months, Post Doctoral position<br />Start: from March 2016<br />Place: CEA, Genoscope UMR8030, LABGeM (Laboratory of Bioinformatics Analyses for Genomics and Metabolism), Evry, France<br />Contact: David Vallenet, vallenet@genoscope.cns.fr<br />Publications: https://scholar.google.com/citations?user=rJNPLSAAAAAJ<br />Remuneration per month: from 2,850 €</p>

<p>Interested candidates should send their CV, statement of research interests, and contact information of at least 2 references to David Vallenet (vallenet@genoscope.cns.fr).</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26559/microscope</guid>
	<pubDate>Fri, 04 Mar 2016 05:26:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26559/microscope</link>
	<title><![CDATA[Microscope]]></title>
	<description><![CDATA[<p>Microscope Platform user documentation.</p>
<p>The MicroScope platform is available at this URL:</p>
<p><a href="https://www.genoscope.cns.fr/agc/microscope">https://www.genoscope.cns.fr/agc/microscope</a></p><p>Address of the bookmark: <a href="http://microscope.readthedocs.org/en/latest/index.html" rel="nofollow">http://microscope.readthedocs.org/en/latest/index.html</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26363/flo</guid>
	<pubDate>Wed, 10 Feb 2016 10:52:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26363/flo</link>
	<title><![CDATA[flo]]></title>
	<description><![CDATA[<p>flo - same species annotations lift over pipeline</p>
<p>Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimentally verified) are available on the old assembly.</p>
<p>The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver).</p>
<p>&nbsp;</p>
<p>https://github.com/wurmlab/flo</p><p>Address of the bookmark: <a href="https://github.com/wurmlab/flo" rel="nofollow">https://github.com/wurmlab/flo</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide</guid>
	<pubDate>Thu, 18 Feb 2016 04:50:51 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide</link>
	<title><![CDATA[Advanced Bash-Scripting Guide]]></title>
	<description><![CDATA[<p>This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced level of instruction <em>. . . all the while sneaking in little nuggets of <span>UNIX</span>&reg; wisdom and lore</em>. It serves as a textbook, a manual for self-study, and as a reference and source of knowledge on shell scripting techniques. The exercises and heavily-commented examples invite active reader participation, under the premise that <tt><strong>the only way to really learn scripting is to write scripts</strong></tt>.</p>
<p>This book is suitable for classroom use as a general introduction to programming concepts.</p>
<p>More at http://tldp.org/LDP/abs/html/</p><p>Address of the bookmark: <a href="http://tldp.org/LDP/abs/html/" rel="nofollow">http://tldp.org/LDP/abs/html/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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