<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/39689?offset=190 https://bioinformaticsonline.com/bookmarks/view/43090/loretta-a-user-friendly-tool-for-assembling-viral-genomes-from-pacbio-sequence-data Wed, 23 Jun 2021 07:54:53 -0500 https://bioinformaticsonline.com/bookmarks/view/43090/loretta-a-user-friendly-tool-for-assembling-viral-genomes-from-pacbio-sequence-data <![CDATA[LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data]]> LoReTTA (Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoReTTA exploits a reference genome to guide the assembly process, an approach that has been successful with short reads.

https://academic.oup.com/ve/article/7/1/veab042/6248116

Address of the bookmark: https://academic.oup.com/ve/article/7/1/veab042/6248116

]]> Neel https://bioinformaticsonline.com/bookmarks/view/44529/contigextender-a-new-approach-to-improving-de-novo-sequence-assembly-for-viral-metagenomics-data Wed, 08 May 2024 07:32:45 -0500 https://bioinformaticsonline.com/bookmarks/view/44529/contigextender-a-new-approach-to-improving-de-novo-sequence-assembly-for-viral-metagenomics-data <![CDATA[ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data]]> ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate contigs. ContigExtender is effective for extending contigs significantly in in silico synthesized and real metagenomics datasets.

More at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953547/

extension process

Address of the bookmark: https://github.com/dengzac/contig-extender

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