<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/39884?offset=110 https://bioinformaticsonline.com/bookmarks/view/37572/gtdb-tk-a-toolkit-for-assigning-objective-taxonomic-classifications-to-bacterial-and-archaeal-genomes Wed, 22 Aug 2018 03:21:01 -0500 https://bioinformaticsonline.com/bookmarks/view/37572/gtdb-tk-a-toolkit-for-assigning-objective-taxonomic-classifications-to-bacterial-and-archaeal-genomes <![CDATA[GTDB-Tk: A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.]]> GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is computationally efficient and designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes. The GTDB-Tk is open source and released under the GNU General Public License (Version 3).

GTDB-Tk is under active development and validation. Please independently confirm the GTDB-Tk predictions by manually inspecting the tree and bringing any discrepencies to our attention. Notifications about GTDB-Tk releases will be available through the ACE Twitter account (https://twitter.com/ace_uq).

Address of the bookmark: https://github.com/Ecogenomics/GTDBTk

]]> Rahul Nayak https://bioinformaticsonline.com/bookmarks/view/42491/eukulele-taxonomic-annotation-of-the-unsung-eukaryotic-microbes Sat, 26 Dec 2020 12:10:17 -0600 https://bioinformaticsonline.com/bookmarks/view/42491/eukulele-taxonomic-annotation-of-the-unsung-eukaryotic-microbes <![CDATA[EUKulele: Taxonomic annotation of the unsung eukaryotic microbes]]>  EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.

Address of the bookmark: https://github.com/AlexanderLabWHOI/EUKulele

]]> Shruti Paniwala