<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/40298?offset=330 https://bioinformaticsonline.com/bookmarks/view/38561/hawkeye-an-interactive-visual-analytics-tool-for-genome-assemblies Tue, 01 Jan 2019 11:56:17 -0600 https://bioinformaticsonline.com/bookmarks/view/38561/hawkeye-an-interactive-visual-analytics-tool-for-genome-assemblies <![CDATA[Hawkeye: an interactive visual analytics tool for genome assemblies]]> Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-3-r34

Address of the bookmark: http://amos.sourceforge.net/wiki/index.php?title=Hawkeye

]]> Abhimanyu Singh https://bioinformaticsonline.com/bookmarks/view/44208/circos-visualization Mon, 06 Mar 2023 06:01:32 -0600 https://bioinformaticsonline.com/bookmarks/view/44208/circos-visualization <![CDATA[Circos visualization !]]> Circos visualization

https://wlcb.oit.uci.edu/modules/index.html

Address of the bookmark: https://wlcb.oit.uci.edu/NG-Circos

]]> BioStar https://bioinformaticsonline.com/bookmarks/view/44630/genofig-a-user-friendly-application-for-the-visualization-and-comparison-of-genomic-regions Mon, 05 Aug 2024 23:06:58 -0500 https://bioinformaticsonline.com/bookmarks/view/44630/genofig-a-user-friendly-application-for-the-visualization-and-comparison-of-genomic-regions <![CDATA[GenoFig: a user-friendly application for the visualization and comparison of genomic regions]]> Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/]

Download the GenoFig source code using the 'Download' button on top of this page. Cloning is currently not available for people not member of the INRAE French Institution. After decompression, open a terminal in the folder containing the decompressed files and run:

conda env create -f extras/requirements.yml
extras/SETUP.sh

Address of the bookmark: https://forgemia.inra.fr/public-pgba/genofig

]]> BioStar