The Snakemake Wrappers repository

BioStar — Thu, 19 Aug 2021 04:39:34 -0500

The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows.

More at https://github.com/snakemake/snakemake-wrappers

Address of the bookmark: https://snakemake-wrappers.readthedocs.io/en/stable/

SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions

Jit — Tue, 15 May 2018 04:42:11 -0500

SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to work for multiple samples. It can work for >= 2 samples, but we suggest that users should use >= 5 samples as in the work tested in our paper.

Address of the bookmark: https://github.com/hoangtn/SRBreak

BOL: Related items

The Snakemake Wrappers repository

SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions