<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/41397?offset=270 https://bioinformaticsonline.com/bookmarks/view/33482/tardis-toolkit-for-automated-and-rapid-discovery-of-structural-variants Fri, 09 Jun 2017 04:43:31 -0500 https://bioinformaticsonline.com/bookmarks/view/33482/tardis-toolkit-for-automated-and-rapid-discovery-of-structural-variants <![CDATA[TARDIS: Toolkit for automated and rapid discovery of structural variants]]> tardis

Toolkit for Automated and Rapid DIscovery of Structural variants

Requirements

zlib (http://www.zlib.net)
mrfast (https://github.com/BilkentCompGen/mrfast)
htslib (included as submodule; http://htslib.org/)
Fetching tardis

git clone https://github.com/BilkentCompGen/tardis.git --recursive

 

https://github.com/BilkentCompGen/tardis

Address of the bookmark: https://github.com/BilkentCompGen/tardis

]]> Neel https://bioinformaticsonline.com/bookmarks/view/41442/gsp4pdb-a-web-tool-to-visualize-search-and-explore-protein-ligand-structural-patterns Sun, 15 Mar 2020 03:41:12 -0500 https://bioinformaticsonline.com/bookmarks/view/41442/gsp4pdb-a-web-tool-to-visualize-search-and-explore-protein-ligand-structural-patterns <![CDATA[GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns]]> GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction.

GSP4PDB is part of the services provided by the Bioinformatic Group of the University of Talca

http://gdblab.com/gsp4pdb/gsp4pdb2/

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3352-x

Address of the bookmark: http://gdblab.com/gsp4pdb/gsp4pdb2/

]]> Neel https://bioinformaticsonline.com/bookmarks/view/43888/syri-compares-alignments-between-two-chromosome-level-assemblies-and-identifies-synteny-and-structural-rearrangements Wed, 01 Jun 2022 02:01:13 -0500 https://bioinformaticsonline.com/bookmarks/view/43888/syri-compares-alignments-between-two-chromosome-level-assemblies-and-identifies-synteny-and-structural-rearrangements <![CDATA[Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.]]> Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.

image

Address of the bookmark: https://github.com/schneebergerlab/syri

]]> Shruti Paniwala