<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/41464?offset=530</link>
	<atom:link href="https://bioinformaticsonline.com/related/41464?offset=530" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29998/csir-nehru-science-postdoctoral-research-fellowship</guid>
  <pubDate>Tue, 29 Nov 2016 12:34:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[CSIR Nehru Science Postdoctoral Research Fellowship]]></title>
  <description><![CDATA[
<p>CSIR Nehru Science Postdoctoral Research Fellowship</p>

<p>About Fellowship: <br />CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows.</p>

<p>It was started to identify promising and young researchers with novel ideas and provide them research opportunities in the areas of basic science, engineering, medicine &amp; agriculture.</p>

<p>The fellowship aims at facilitating their transition from mentored to independent research career.</p>

<p>In addition, check these ICTS Research Fellowships:<br />1.) Max-Planck Partner Group Fellowships 2017-18<br />2.) ICTS-Simons Postdoctoral Fellowships 2017<br />3.) ICTS Post Doctoral Fellowships 2017<br />4.) Airbus Prize Postdoctoral Fellowship 2017-18</p>

<p>Eligibility: To be eligible for this fellowship, you:<br />1.) PhD degree (within 3 years of award of PhD degree), OR<br />2.) Those who have submitted PhD theses.<br />3.) Applicants should have research publications in good impact factor SCI journals.<br />4.) Indian nationals, Persons of Indian Origin (PIO) &amp; Overseas Citizen of India (OCI), a can also apply.<br />5.) Maximum Age Limit: 32 years.</p>

<p>Duration: <br />– 2 Years.<br />– extendable for a maximum of 1 more year based on performance.</p>

<p>Remuneration: <br />– Rs. 50,000/- per month plus House Rent Allowance (HRA)<br />– A contingency grant of Rs. 3.0 lakh per annum.<br />– 25% of the contingency grant can be used for domestic and international travel.</p>

<p>Mode of Selection: You can apply throughout the year, but selection will be made twice a year, in June and December.</p>

<p>How to Apply: <br />– Read the instructions, given at Annexure-I in this PDF file.<br />– And, application form is given as, Annexure-II.<br />– Fill the form &amp; send it to the given address in the PDF file.</p>

<p>Deadline: Rolling Deadline (Applications accepted throughout the year)</p>

<p>Also See: Research Internship/ Fellowship in India:<br />1.) IIT Bombay Research Internship Awards Programme 2016-17<br />2.) IIT Delhi Internship Program 2016-17<br />3.) DAAD WISE – International Internship in Germany<br />4.) Summer Research Fellowship Programme| JNCASR Bangalore<br />5.) Indian Academy of Sciences Summer Internships 2017<br />6.) Winter Internship – IIT Bombay NPDE-TCA<br />7.) Viterbi – India Program 2017 | Research Internship in US<br />8.) Internship – Centre for Stem Cell Research, Vellore</p>

<p>Accommodation &amp; other benefits: <br />– Accommodation may be provided by CSIR, if available.<br />– Medical benefits as per CSIR norms.</p>

<p>For more details: <br />– Check this PDF Notification of Fellowship.<br />– List of CSIR Labs &amp; their work/activities can be seen at www.csir.res.in.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44749/2024s-top-10-science-breakthroughs-innovations-shaping-our-future</guid>
	<pubDate>Mon, 30 Dec 2024 11:22:21 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44749/2024s-top-10-science-breakthroughs-innovations-shaping-our-future</link>
	<title><![CDATA[2024&#039;s Top 10 Science Breakthroughs: Innovations Shaping Our Future]]></title>
	<description><![CDATA[<p>The year 2024 has been marked by remarkable scientific advancements across various disciplines, each contributing to a deeper understanding of our universe, our planet, and ourselves. Here are ten of the most intriguing breakthroughs that have captured the world's attention:</p><p><strong>James Webb Space Telescope's Revelations:</strong> Since its launch, the James Webb Space Telescope has provided unprecedented insights into the cosmos, unveiling details about the early universe and distant galaxies that were previously beyond our reach.</p><p><strong>Re-establishing Contact with Voyager 1:</strong> In a testament to human ingenuity, scientists successfully re-established communication with Voyager 1, the spacecraft launched in 1977 now traversing interstellar space, offering data from the far reaches of our solar system.</p><p><strong>Advancements in Human Biology:</strong> The global cell atlas project released its initial findings, mapping human cells with unprecedented detail, akin to a "Google Maps for the body." Additionally, the first complete map of a fruit fly's brain was unveiled, promising new insights into neurological diseases.</p><p><strong>Public Health Milestones:</strong> The rollout of the first malaria vaccines and the commencement of late-stage clinical trials for a new tuberculosis vaccine&mdash;the first in over a century&mdash;marked significant strides in combating these diseases. Efforts against HIV/AIDS also showed promising progress, particularly in Africa.</p><p><strong>Weight-Loss Drugs' Expanded Potential:</strong> Medications initially developed for weight loss demonstrated potential in treating a range of other diseases, indicating a broader therapeutic application than previously anticipated.</p><p><strong>Robotics and Quantum Computing:</strong> Technological advancements brought robots capable of performing more complex tasks and moved quantum computing closer to practical, real-world applications, heralding a new era in computing and automation.</p><p><strong>Synthetic Biology Concerns:</strong> Leading researchers, including Nobel laureates, raised alarms about the potential risks associated with synthetic biology, particularly the creation of "mirror bacteria," underscoring the need for careful regulation in this rapidly evolving field.</p><p><strong>Climate Change Insights:</strong> Studies indicated that global CO₂ emissions plateaued with only a 0.1% increase in 2023, suggesting a potential turning point in emission trends. However, concerns about climate tipping points, such as the Atlantic Meridional Overturning Current, highlighted the urgency for continued action.</p><p>New Antibiotic Class Discovered: A novel class of antibiotics targeting multi-drug resistant bacteria was discovered, offering hope in the fight against antibiotic-resistant infections.</p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34292/automatic-filtering-trimming-error-removing-and-quality-control-for-fastq-data</guid>
	<pubDate>Mon, 13 Nov 2017 05:10:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34292/automatic-filtering-trimming-error-removing-and-quality-control-for-fastq-data</link>
	<title><![CDATA[Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data]]></title>
	<description><![CDATA[<p><span>Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data</span><br><code>AfterQC</code><span>&nbsp;can simply go through all fastq files in a folder and then output three folders:&nbsp;</span><span>good</span><span>,&nbsp;</span><span>bad</span><span>&nbsp;and&nbsp;</span><span>QC</span><span>&nbsp;folders, which contains good reads, bad reads and the QC results of each fastq file/pair.</span><br><span>Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other&nbsp;</span><a href="http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_FASTQFiles.htm">Illumina 1.8 or newer formats</a></p><p>Address of the bookmark: <a href="https://github.com/OpenGene/AfterQC" rel="nofollow">https://github.com/OpenGene/AfterQC</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34504/minion-gc-an-r-script-to-do-some-qc-on-minion-data</guid>
	<pubDate>Sun, 03 Dec 2017 15:19:18 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34504/minion-gc-an-r-script-to-do-some-qc-on-minion-data</link>
	<title><![CDATA[MinION_GC: An R script to do some QC on MinION data]]></title>
	<description><![CDATA[<p><span>Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out there: it takes about a minute to analyse a 4GB flowcell on my laptop.</span></p>
<p>https://github.com/roblanf/minion_qc</p><p>Address of the bookmark: <a href="https://github.com/roblanf/minion_qc" rel="nofollow">https://github.com/roblanf/minion_qc</a></p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36518/mix-combining-multiple-assemblies-from-ngs-data</guid>
	<pubDate>Tue, 08 May 2018 04:58:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36518/mix-combining-multiple-assemblies-from-ngs-data</link>
	<title><![CDATA[MIX: Combining multiple assemblies from NGS data]]></title>
	<description><![CDATA[<p>Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes the cumulative contig length.</p>
<p>The Mix algorithm, approach and results were published in BMC bioinformatics :&nbsp;<a href="http://www.biomedcentral.com/1471-2105/14/S15/S16">http://www.biomedcentral.com/1471-2105/14/S15/S16</a>.</p><p>Address of the bookmark: <a href="https://github.com/cbib/MIX" rel="nofollow">https://github.com/cbib/MIX</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37498/nextsv-a-meta-caller-for-structural-variants-from-low-coverage-long-read-sequencing-data</guid>
	<pubDate>Mon, 06 Aug 2018 17:24:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37498/nextsv-a-meta-caller-for-structural-variants-from-low-coverage-long-read-sequencing-data</link>
	<title><![CDATA[NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data]]></title>
	<description><![CDATA[<p>NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV is in ANNOVAR-compatible bed format. Users can easily perform downstream annotation using ANNOVAR and disease gene discovery using Phenolyzer.</p>
<p>&nbsp;</p>
<h2>&nbsp;</h2><p>Address of the bookmark: <a href="https://github.com/Nextomics/NextSV" rel="nofollow">https://github.com/Nextomics/NextSV</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38172/bamview-a-free-interactive-display-of-read-alignments-in-bam-data-files</guid>
	<pubDate>Fri, 09 Nov 2018 13:43:22 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38172/bamview-a-free-interactive-display-of-read-alignments-in-bam-data-files</link>
	<title><![CDATA[BamView: a free interactive display of read alignments in BAM data files]]></title>
	<description><![CDATA[<p>To run the application on UNIX from the downloaded jar file run the UNIX:</p>
<p><tt>java -mx512m -jar BamView.jar</tt></p>
<p>and extra command line options are given when '-h' is used:</p>
<p><tt>java -jar BamView.jar -h</tt></p>
<p>BAM files can be specified on the command line with the '-a' option:</p>
<p><tt>java -mx512m -jar BamView.jar -a pathToFile/sorted.bam</tt></p>
<p>If a BAM filename is not given on the command line BamView will prompt for a file to be entered. The BAM index file should have the same name as the BAM file but with a '.bai' suffix. Multiple BAM files can be loaded and overlaid in the viewer. To make this easier BamView will read in files that contain a list of filenames.</p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="http://bamview.sourceforge.net/" rel="nofollow">http://bamview.sourceforge.net/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38598/zenbu-a-collaborative-omics-data-integration-and-interactive-visualization-system</guid>
	<pubDate>Fri, 04 Jan 2019 13:35:26 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38598/zenbu-a-collaborative-omics-data-integration-and-interactive-visualization-system</link>
	<title><![CDATA[ZENBU: a collaborative, omics data integration and interactive visualization system]]></title>
	<description><![CDATA[<p><span>ZENBU</span><span>&nbsp;</span><span>is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visualizations and is able to make many-views from the same primary sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text files.&nbsp;<br>Please check our&nbsp;<a href="http://fantom.gsc.riken.jp/zenbu/wiki">documentation wiki</a>&nbsp;for details on how to use the system, or check out some of the views above.</span></p><p>Address of the bookmark: <a href="http://fantom.gsc.riken.jp/zenbu/" rel="nofollow">http://fantom.gsc.riken.jp/zenbu/</a></p>]]></description>
	<dc:creator>BioJoker</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39200/omtools-a-software-package-for-visualizing-and-processing-optical-mapping-data</guid>
	<pubDate>Fri, 29 Mar 2019 01:21:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39200/omtools-a-software-package-for-visualizing-and-processing-optical-mapping-data</link>
	<title><![CDATA[OMTools: a software package for visualizing and processing optical mapping data]]></title>
	<description><![CDATA[<p><span>OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visualization (OMView), data processing and simulation. These modules together form an accessible and convenient pipeline for optical mapping analyses.</span></p>
<p><span><a href="https://github.com/TF-Chan-Lab/OMTools">https://github.com/TF-Chan-Lab/OMTools</a></span></p><p>Address of the bookmark: <a href="https://github.com/TF-Chan-Lab/OMTools" rel="nofollow">https://github.com/TF-Chan-Lab/OMTools</a></p>]]></description>
	<dc:creator>BioJoker</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40611/deepvariant-an-analysis-pipeline-that-uses-a-deep-neural-network-to-call-genetic-variants-from-next-generation-dna-sequencing-data</guid>
	<pubDate>Sat, 25 Jan 2020 13:28:09 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40611/deepvariant-an-analysis-pipeline-that-uses-a-deep-neural-network-to-call-genetic-variants-from-next-generation-dna-sequencing-data</link>
	<title><![CDATA[DeepVariant : an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.]]></title>
	<description><![CDATA[<p><span>DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.</span></p>
<p><span><span>DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant relies on&nbsp;</span><a href="https://github.com/google/nucleus">Nucleus</a><span>, a library of Python and C++ code for reading and writing data in common genomics file formats (like SAM and VCF) designed for painless integration with the&nbsp;</span><a href="https://www.tensorflow.org/">TensorFlow</a><span>&nbsp;machine learning framework.</span></span></p>
<p><span><a href="https://ai.googleblog.com/2017/12/deepvariant-highly-accurate-genomes.html">https://ai.googleblog.com/2017/12/deepvariant-highly-accurate-genomes.html</a></span></p>
<p><span><a href="https://www.biorxiv.org/content/10.1101/092890v6">https://www.biorxiv.org/content/10.1101/092890v6</a></span></p>
<p><span><img src="https://4.bp.blogspot.com/-2KlXZO60sWE/WiGc8qlZfxI/AAAAAAAACOs/s1pNiKI8jsAvJLr1E_po5udDO8eObm_awCLcBGAs/s640/image3.png" width="640" height="427" alt="image" style="border: 0px;"></span></p><p>Address of the bookmark: <a href="https://github.com/google/deepvariant" rel="nofollow">https://github.com/google/deepvariant</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

</channel>
</rss>