<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/41673?offset=610 https://bioinformaticsonline.com/bookmarks/view/35543/genometools-the-versatile-open-source-genome-analysis-software Wed, 07 Feb 2018 10:44:18 -0600 https://bioinformaticsonline.com/bookmarks/view/35543/genometools-the-versatile-open-source-genome-analysis-software <![CDATA[GenomeTools: The versatile open source genome analysis software]]> The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.

If you are interested in gene prediction, have a look at GenomeThreader.

Address of the bookmark: http://genometools.org/

]]> Jit https://bioinformaticsonline.com/bookmarks/view/36516/metassembler-merging-and-optimizing-de-novo-genome-assemblies Tue, 08 May 2018 04:52:33 -0500 https://bioinformaticsonline.com/bookmarks/view/36516/metassembler-merging-and-optimizing-de-novo-genome-assemblies <![CDATA[Metassembler: merging and optimizing de novo genome assemblies]]> Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies.

Genome assembly projects typically run multiple algorithms in an attempt to find the single best assembly, although those assemblies often have complementary, if untapped, strengths and weaknesses. We present our metassembler algorithm that merges multiple assemblies of a genome into a single superior sequence. 

Address of the bookmark: https://sourceforge.net/projects/metassembler/?source=directory

]]> Rahul Nayak