<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/41691?offset=660 https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package Mon, 07 Mar 2016 05:18:06 -0600 https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package <![CDATA[Efficient genome searching with Biostrings and the BSgenome data package]]> Address of the bookmark: https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf

]]> Aasha https://bioinformaticsonline.com/bookmarks/view/27696/methylkit Fri, 03 Jun 2016 10:09:29 -0500 https://bioinformaticsonline.com/bookmarks/view/27696/methylkit <![CDATA[methylKit]]> methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can deal with base-pair resolution data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome bisulfite sequencing data if proper input format is provided.

Address of the bookmark: https://github.com/al2na/methylKit

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