<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/41869?offset=20 https://bioinformaticsonline.com/blog/view/41455/coronavirus-covid-%E2%80%9019-testing-sites-in-india Mon, 16 Mar 2020 16:13:41 -0500 https://bioinformaticsonline.com/blog/view/41455/coronavirus-covid-%E2%80%9019-testing-sites-in-india <![CDATA[Coronavirus COVID ‐19 Testing Sites In India]]> COVID-19 is a new illness that can affect your lungs and airways. It's caused by a virus called coronavirus.

Stay at home if you have coronavirus symptoms

Stay at home if you have either:

  • a high temperature – you feel hot to touch on your chest or back
  • a new, continuous cough – this means you've started coughing repeatedly

DO NOT TAKE

Ibrufen

https://amp.theguardian.com/world/2020/mar/14/anti-inflammatory-drugs-may-aggravate-coronavirus-infection

How to avoid catching and spreading coronavirus (social distancing)

Everyone should do what they can to stop coronavirus spreading.

It is particularly important for people who:

  • are 70 or over
  • have a long-term condition
  • are pregnant
  • have a weakened immune system

image

Below are the 52 Coronavirus COVID-19 Testing sites/locations in India.

State: Andhra Pradesh       

  1. Sri Venkateswara Institute of Medical Sciences, Tirupati
  2. Andhra Medical College, Visakhapatnam, Andhra Pradesh
  3. GMC, Anantapur, AP

State: Andaman & Nicobar islands

  1. Regional Medical Research Centre, Port Blair, Andaman, and Nicobar

State: Assam

  1. Gauhati Medical College, Guwahati
  2.  Regional Medical Research Center, Dibrugarh

State: Bihar

  1. Rajendra Memorial Research Institute of Medical Sciences, Patna

State: Chandigarh

  1. Post Graduate Institute of Medical Education & Research, Chandigarh

State: Chhattisgarh

  1. All India Institute Medical Sciences, Raipur

Union Territory: Delhi-NCT 

  1. All India Institute Medical Sciences, Delhi
  2. National Centre for Disease Control, Delhi

State: Gujarat

  1. BJ Medical College, Ahmedabad
  2. M.P.Shah Government Medical College, Jamnagar

State: Haryana

  1. Pt. B.D. Sharma Post Graduate Inst. of Med. Sciences, Rohtak, Haryana
  2. BPS Govt Medical College, Sonipat

State: Himachal Pradesh

  1. Indira Gandhi Medical College, Shimla, Himachal Pradesh
  2. Dr.Rajendra Prasad Govt. Med. College, Kangra, Tanda, HP

Union Territory: Jammu and Kashmir

  1. Sher‐e‐ Kashmir Institute of Medical Sciences, Srinagar
  2. Government Medical College, Jammu

State: Jharkhand

  1. MGM Medical College, Jamshedpur

State: Karnataka

  1. Bangalore Medical College & Research Institute, Bangalore
  2. National Institute of Virology Field Unit Bangalore
  3. Mysore Medical College & Research Institute, Mysore
  4. Hassan Inst. of Med. Sciences, Hassan, Karnataka
  5. Shimoga Inst. of Med. Sciences, Shivamogga, Karnataka

State: Kerala

  1. National Institute of Virology Field Unit, Kerala
  2. Govt. Medical College, Thiruvananthapuram, Kerala
  3. Govt. Medical College, Kozhikode, Kerala

State: Madhya Pradesh

  1. All India Institute Medical Sciences, Bhopal
  2. National Institute of Research in Tribal Health (NIRTH), Jabalpur

State: Meghalaya

  1. NEIGRI of Health and Medical Sciences, Shillong, Meghalaya

State: Maharashtra

  1. Indira Gandhi Government Medical College, Nagpur
  2. Kasturba Hospital for Infectious Diseases, Mumbai

State: Manipur

  1. J N Inst. of Med. Sciences Hospital, Imphal‐East, Manipur

State: Odisha

  1. Regional Medical Research Center, Bhubaneswar

Union Territory: Puducherry

  1. Jawaharlal Institute of Postgraduate Medical Education & Research, Puducherry

State: Punjab

  1. Government Medical College, Patiala, Punjab
  2. Government Medical College, Amritsar

State: Rajasthan

  1. Sawai Man Singh, Jaipur
  2. Dr. S.N Medical College, Jodhpur
  3. Jhalawar Medical College, Jhalawar, Rajasthan
  4. SP Med. College, Bikaner, Rajasthan

State: Tamil Nadu

  1. King’s Institute of Preventive Medicine & Research, Chennai
  2. Government Medical College, Theni

State: Tripura

  1. Government Medical College, Agartala

State: Telangana

  1. Gandhi Medical College, Secunderabad

State: Uttar Pradesh

  1. King’s George Medical University, Lucknow
  2. Institute of Medical Sciences, Banaras, Hindu University, Varanasi
  3. Jawaharlal Nehru Medical College, Aligarh

State: Uttarakhand

  1. Government Medical College, Haldwani

State: West Bengal

  1. National Institute of Cholera and Enteric Diseases, Kolkata
  2. IPGMER, Kolkata
]]> Neel https://bioinformaticsonline.com/bookmarks/view/42357/irscope-an-online-program-to-visualize-the-junction-sites-of-chloroplast-genomes Wed, 25 Nov 2020 19:44:46 -0600 https://bioinformaticsonline.com/bookmarks/view/42357/irscope-an-online-program-to-visualize-the-junction-sites-of-chloroplast-genomes <![CDATA[IRscope: an online program to visualize the junction sites of chloroplast genomes]]> eMPRess, a software program for phylogenetic tree reconciliation under the duplication-transfer-loss model that systematically addresses the problems of choosing event costs and selecting representative solutions, enabling users to make more robust inferences.

Address of the bookmark: https://sites.google.com/g.hmc.edu/empress/home

]]> Neel https://bioinformaticsonline.com/file/view/5685/systems-biology-approach-to-model-inflammation-in-human-2pptx Thu, 17 Oct 2013 00:54:13 -0500 https://bioinformaticsonline.com/file/view/5685/systems-biology-approach-to-model-inflammation-in-human-2pptx <![CDATA[SYSTEMS BIOLOGY APPROACH TO MODEL INFLAMMATION IN HUMAN (2).pptx]]> ROSHNI https://bioinformaticsonline.com/bookmarks/view/43909/human-complete-genome Wed, 06 Jul 2022 06:42:55 -0500 https://bioinformaticsonline.com/bookmarks/view/43909/human-complete-genome <![CDATA[Human Complete Genome]]> Telomere-to-telomere consortium

We have sequenced the CHM13hTERT human cell line with a number of technologies. Human genomic DNA was extracted from the cultured cell line. As the DNA is native, modified bases will be preserved. The data includes 30x PacBio HiFi, 120x coverage of Oxford Nanopore, 70x PacBio CLR, 50x 10X Genomics, as well as BioNano DLS and Arima Genomics HiC. Most raw data is available from this site, with the exception of the PacBio data which was generated by the University of Washington/PacBio and is available from NCBI SRA.

A UCSC browser is available for v2.0 (as well as legacy v1.0 and v1.1 versions). An interactive dotplot visualization of all genomic repeats is also available from resgen.io. Known issues identified in the assembly are tracked at CHM13 issues.

 

MORE at https://github.com/marbl/CHM13

Address of the bookmark: https://www.science.org/doi/10.1126/science.abj6987

]]> Shruti Paniwala https://bioinformaticsonline.com/bookmarks/view/35420/telomerehunter Fri, 02 Feb 2018 04:23:59 -0600 https://bioinformaticsonline.com/bookmarks/view/35420/telomerehunter <![CDATA[TelomereHunter]]> TelomereHunter is a tool for estimating telomere content from human whole-genome sequencing data. It is designed to take BAM files from a tumor and a matching control sample as input. However, it is also possible to run TelomereHunter with one input file. TelomereHunter extracts and sorts telomeric reads from the input sample(s). For the estimation of telomere content, GC biases are taken into account. Finally, the results of TelomereHunter are visualized in several diagrams.

TelomereHunter is available for download at the following address: https://pypi.python.org/pypi/telomerehunter/

Address of the bookmark: http://www.dkfz.de/en/applied-bioinformatics/telomerehunter/telomerehunter.html

]]> Jit https://bioinformaticsonline.com/bookmarks/view/39281/humcfs-a-database-of-fragile-sites-in-human-chromosomes Sun, 21 Apr 2019 20:17:29 -0500 https://bioinformaticsonline.com/bookmarks/view/39281/humcfs-a-database-of-fragile-sites-in-human-chromosomes <![CDATA[HumCFS: a database of fragile sites in human chromosomes]]> Fragile sites are specific chromosomal region that exhibit an increased frequency of chromosdomal breakge when cells are exposed to replicative stress. Since from the discovery of chromosomal fragile sites/regions (CFS), several line of evidence suggests their involvement in human pathologies and they have been recognized as a preferential site for integration of exogenous oncogenic DNA viruses and hotspots for chromosomal re-arrangement. There is large gap in our knowledge of human CFS region as knowledge about CFS are unequally distributed in literature, which impose a problem in studying these region. In order to address these issues, we develop this platform HumCFS, which provides comprehensive information about experimentally identified CFS at a single source.

https://link.springer.com/epdf/10.1186/s12864-018-5330-5?author_access_token=ICASEpyMAQaxLlKw--fyCG_BpE1tBhCbnbw3BuzI2RMA57KLmXk5bZabRUiDQzRFHXd6hjm4kWSiLV3mU5XVMitqXUwFMSo4x5vbfty0EDQ9PW1sd1h923_TYXkvJ5niSwAyZ7BklJ0ujFAFhcKtjw%3D%3D

Address of the bookmark: https://webs.iiitd.edu.in/raghava/humcfs/

]]> Abhimanyu Singh https://bioinformaticsonline.com/bookmarks/view/43846/the-complete-sequence-of-a-human-genome Thu, 31 Mar 2022 23:58:18 -0500 https://bioinformaticsonline.com/bookmarks/view/43846/the-complete-sequence-of-a-human-genome <![CDATA[The complete sequence of a human genome]]> The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies.

Address of the bookmark: https://www.science.org/doi/10.1126/science.abj6987

]]> Neel https://bioinformaticsonline.com/news/view/38022/ensembl-94-is-out Fri, 26 Oct 2018 08:14:24 -0500 https://bioinformaticsonline.com/news/view/38022/ensembl-94-is-out <![CDATA[Ensembl 94 is out!]]> The latest version of Ensembl, release 94, is out and have we got some treats for you. As well as GENCODE updates for human and mouse, we’ve also got loads of new fish. Plus, we have brand new transcription factor binding motifs, additional predictors of variant pathogenicity and updated gene tree pipelines.

more at http://www.ensembl.info/2018/10/03/ensembl-94-is-out/

]]> Jit https://bioinformaticsonline.com/bookmarks/view/43685/chipbase-open-database-for-studying-the-transcription-factor-binding-sites-and-motifs Wed, 29 Dec 2021 05:36:03 -0600 https://bioinformaticsonline.com/bookmarks/view/43685/chipbase-open-database-for-studying-the-transcription-factor-binding-sites-and-motifs <![CDATA[ChIPBase: open database for studying the transcription factor binding sites and motifs]]> ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species.

Address of the bookmark: https://rna.sysu.edu.cn/chipbase/

]]> Abhi