<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/41991?offset=880</link>
	<atom:link href="https://bioinformaticsonline.com/related/41991?offset=880" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37460/revigo-reduced-visualize-gene-ontology</guid>
	<pubDate>Tue, 31 Jul 2018 05:28:42 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37460/revigo-reduced-visualize-gene-ontology</link>
	<title><![CDATA[REVIGO: Reduced Visualize gene ontology]]></title>
	<description><![CDATA[<div>REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interactive graphs, or tag clouds.&nbsp;<a href="http://dx.doi.org/10.1371/journal.pone.0021800">More about REViGO...</a>&nbsp;|&nbsp;<a href="http://revigo.irb.hr/about_hr.jsp"><img src="http://revigo.irb.hr/gfx/croatian-wCrown.png" alt="In Croatian" title="" width="12" height="15" style="border: 0px;"></a></div>
<div>Please enter a list of Gene Ontology IDs below, each on its own line. The GO IDs may be followed by p-values or another quantity which describes the GO term in a way meaningful to you.&nbsp;<img src="http://revigo.irb.hr/gfx/qmark.png" alt="For instance, you may provide a p-value          (statistical significance), a fold change, enrichment, or some          directly measured quantity such as average signal intensity from          microarrays, ion count from mass spec, or read count from RNA-seq.          You may also provide more than one value per line, although only the          first value will be used in GO term selection/clustering." title="" width="16" height="15" style="border: 0px;"></div><p>Address of the bookmark: <a href="http://revigo.irb.hr/" rel="nofollow">http://revigo.irb.hr/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18385/biinformamatics-lead-at-google-life-sciences</guid>
  <pubDate>Fri, 17 Oct 2014 02:24:55 -0500</pubDate>
  <link></link>
  <title><![CDATA[Biinformamatics Lead at Google Life Sciences]]></title>
  <description><![CDATA[
<p>Google Life Sciences is recruiting a technical lead with experience in bioinformatics and clinical bioinformatics, including for biomarker discovery projects such as the Baseline study.</p>

<p>Responsibilities</p>

<p>Lead teams of scientists in structuring, prototyping, and executing large-scale bioinformatic and other analysis.<br />Develop novel bioinformatics, statistical, data processing, pathway, data mining and other algorithms to identify biological signals and their clinical correlates in broad kinds of individual and population data.<br />Develop novel platform-level analytical tools for sequence-based assays (assembly, annotation, variant calling and interpretation, phasing, genome structure, etc.), expression assays (RNAseq and microarray), proteomics, and metabolomics.<br />Develop statistical models that robustly correlate complex laboratory-derived information with phenotypic and clinical information.<br />Create scientifically rigorous visualizations, communications, and presentations of results.</p>

<p>Reference @ https://www.google.com/about/careers/search#!t=jo&amp;jid=62095001</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43877/crowdgo-machine-learning-and-semantic-similarity-guided-consensus-gene-ontology-annotation</guid>
	<pubDate>Thu, 26 May 2022 00:59:49 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43877/crowdgo-machine-learning-and-semantic-similarity-guided-consensus-gene-ontology-annotation</link>
	<title><![CDATA[CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation]]></title>
	<description><![CDATA[<p dir="auto">CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall.</p>
<p dir="auto">Please note that the CrowdGO snakemake workflow is currently only tested on Ubuntu. It should work on OSX, but please report any errors to <a href="mailto:maarten.reijnders@unil.ch">maarten.reijnders@unil.ch</a> or create an issue.</p>
<p>https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010075</p><p>Address of the bookmark: <a href="https://gitlab.com/mreijnders/crowdgo" rel="nofollow">https://gitlab.com/mreijnders/crowdgo</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18580/faculty-positions-at-central-university-of-punjab-bathinda</guid>
  <pubDate>Wed, 22 Oct 2014 10:45:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[Faculty Positions at CENTRAL UNIVERSITY OF PUNJAB, BATHINDA]]></title>
  <description><![CDATA[
<p>Advertisement No. T/NT-01 (2014)</p>

<p>Faculty Positions<br />The Central University of Punjab (CUP), Bathinda will be having the Schools and Departments as given in Table-I. The University invites applications from eligible candidates for the posts of Professors (Pay Band Rs. 37400-67000 with AGP of Rs. 10, 000/-), Associate Professors (Pay Band Rs.37400-67000 with AGP of Rs. 9,000/-) and Assistant Professors (Pay Band Rs.15600-39100 with AGP of Rs. 6,000/-)</p>

<p>POSITION AVAILABLE IN THE AREA OF SPECIALIZTION</p>

<p>3. Bioinformatics,</p>

<p>Procedure to apply: Application forms along with API form complete in all respect along with necessary documents and application fee of Rs. 750/-. (Rs. 250/- for Scheduled Caste/Scheduled Tribe/Person with disabilities) should be sent to:</p>

<p>Registrar (Officiating)<br />Central University of Punjab<br />City Campus, Mansa Road<br />Bathinda-151 001</p>

<p>Application forms from the prospective candidates are accepted upto November 10, 2014.</p>

<p>Based on the qualification of the candidates and the need of the university, the applications received will be processed through appropriately constituted selection committees shortly. Minimum qualification can be relaxed in case of exceptionally outstanding candidate. For further details visit www.cup.ac.in; www.centralunipunjab.com; www.cup.edu.in</p>

<p>The candidate should download the application form available at website www.cup.ac.in;<br />www.centralunipunjab.com; and submit it complete in all respects on or before 10th November 2014.</p>

<p>Those who have applied earlier need to submit Academic Performance Index (API) form, 5 copies of Summary of the Application Form (available at: www.cup.ac.in; www.centralunipunjab.com and Updated CV if not updated recently (without application fee).</p>

<p>http://cup.edu.in/Faculty_details_and_general_instructions.pdf</p>

<p>http://cup.edu.in/Final%20Application%20and%20summary%20Sheet%20and%20Api%20form.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33789/i-pv-interactive-protein-sequence-visualization</guid>
	<pubDate>Mon, 03 Jul 2017 07:52:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33789/i-pv-interactive-protein-sequence-visualization</link>
	<title><![CDATA[I-PV: Interactive Protein Sequence Visualization]]></title>
	<description><![CDATA[<p><span>I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout?</span></p>
<p><span>http://i-pv.org/ipv_rec</span></p><p>Address of the bookmark: <a href="http://i-pv.org/" rel="nofollow">http://i-pv.org/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19020/jrf-in-bioinformatics-bioinformatics-centre-north-eastern-hill-university</guid>
  <pubDate>Thu, 06 Nov 2014 10:24:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ Bioinformatics Centre, North-Eastern Hill University]]></title>
  <description><![CDATA[
<p>Applications with complete bio-data are invited for JRF (3) and Project Assistant (1) in a DBT project "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India" sanctioned for a period of 3 years.</p>

<p>Details are available at www.nehu.ac.in and www.bicnehu.ac.in.</p>

<p>Applications must reach the undersigned within 15 days from the date of publication of this advertisement.</p>

<p>Prof. Pramod Tandon. PI/Mr. Devendra Kumar Biswal (Co-PI)</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37993/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data</guid>
	<pubDate>Thu, 25 Oct 2018 06:14:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37993/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data</link>
	<title><![CDATA[Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data]]></title>
	<description><![CDATA[<p><strong>Platypus</strong><span>&nbsp;is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb. It has been extensively tested on&nbsp;</span><a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=24463883">whole-genome</a><span>,&nbsp;</span><a href="http://www.nature.com/ng/journal/v45/n1/abs/ng.2492.html">exon-capture</a><span>, and&nbsp;</span><a href="http://www.nature.com/nature/journal/v493/n7432/abs/nature11725.html">targeted capture</a><span>&nbsp;data, it has been run on very large datasets as part of the&nbsp;</span><a href="http://www.1000genomes.org/">Thousand Genomes</a><span>&nbsp;and WGS500 projects, and is being used in clinical sequencing trials in the&nbsp;</span><a href="http://www.mcgprogramme.com/">Mainstreaming Cancer Genetics</a><span>&nbsp;programme.&nbsp;</span></p>
<p><span>Tutorial&nbsp;https://github.com/andyrimmer/Platypus/blob/master/misc/README.txt</span></p><p>Address of the bookmark: <a href="http://www.well.ox.ac.uk/platypus" rel="nofollow">http://www.well.ox.ac.uk/platypus</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43810/seqfu-a-suite-of-utilities-for-the-robust-and-reproducible-manipulation-of-sequence-files</guid>
	<pubDate>Tue, 01 Mar 2022 03:13:33 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43810/seqfu-a-suite-of-utilities-for-the-robust-and-reproducible-manipulation-of-sequence-files</link>
	<title><![CDATA[SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files]]></title>
	<description><![CDATA[<p>A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to&nbsp;<em>interleave</em>&nbsp;and&nbsp;<em>de-interleave</em>&nbsp;FASTQ files, to&nbsp;<em>rename</em>&nbsp;sequences and to&nbsp;<em>count</em>&nbsp;and print&nbsp;<em>statistics</em>&nbsp;on sequence lengths. SeqFu is available for Linux and MacOS.</p>
<ul>
<li>A compiled program delivering high performance analyses</li>
<li>Supports FASTA/FASTQ files, also Gzip compressed</li>
<li>A growing collection of handy utilities, also for quick inspection of the datasets</li>
</ul>
<p>Can be easily&nbsp;<a href="https://telatin.github.io/seqfu2/installation">installed</a>&nbsp;via conda:</p>
<div>
<div>
<pre><code>conda <span>install</span> <span>-c</span> bioconda seqfu</code></pre>
</div>
</div><p>Address of the bookmark: <a href="https://telatin.github.io/seqfu2/" rel="nofollow">https://telatin.github.io/seqfu2/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19162/icgeb-bioinformatics-rasrfjrf-vacancies</guid>
  <pubDate>Thu, 13 Nov 2014 13:39:30 -0600</pubDate>
  <link></link>
  <title><![CDATA[ICGEB Bioinformatics RA/SRF/JRF Vacancies]]></title>
  <description><![CDATA[
<p>Research Associate/JRF/SRF position, DBT Sponsored Bioinformatics Infrastructure Facility</p>

<p>Applicants should hold a PhD or a first class MSc/MTech degree in Bioinformatics of Biotechnology/Life Sciences; experience in using bioinformatics tools, working in Linux and knowledge of computer network administration.</p>

<p>Submit CV and letter of interest by email to: Dr. Dinesh Gupta atdinesh@icgeb.res.in</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33223/tbl2asn-a-command-line-program-that-automates-the-creation-of-sequence-records-for-submission-to-genbank</guid>
	<pubDate>Mon, 29 May 2017 07:37:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33223/tbl2asn-a-command-line-program-that-automates-the-creation-of-sequence-records-for-submission-to-genbank</link>
	<title><![CDATA[Tbl2asn: a command-line program that automates the creation of sequence records for submission to GenBank]]></title>
	<description><![CDATA[<p>Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank. It uses many of the same functions as Sequin but is driven generally by data files. Tbl2asn generates .sqn files for submission to GenBank. Additional manual editing is not required before submission.</p>
<p>Tbl2asn is available by anonymous&nbsp;<a href="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/">FTP</a>. Copy the right version for your platform, then uncompress the file, rename it to "tbl2asn", and set the permissions, as necessary for the platform.</p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/" rel="nofollow">https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
</item>

</channel>
</rss>