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	<title><![CDATA[BOL: Related items]]></title>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/34326/list-of-research-institutes-in-india-biological-sciences-biotechnology</guid>
	<pubDate>Tue, 14 Nov 2017 09:46:16 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34326/list-of-research-institutes-in-india-biological-sciences-biotechnology</link>
	<title><![CDATA[List of Research Institutes in India (Biological Sciences/ Biotechnology)]]></title>
	<description><![CDATA[<p>A laboratory (normally lab) is a facility that provides controlled conditions in which scientific or technological research, experiments, and measurement may be performed.</p><p>The aims of bio/medical research are also broad, including:<br />&bull; Understanding mechanism of disease<br />&bull; Understanding the impact of genetic and external factors on human health<br />&bull; Designing and evaluating new therapeutic interventions<br />&bull; Health genomics</p><p>List of Research Institutes in India (Biological Sciences)</p><p>BANGALORE <br />Ashoka Trust for Ecology and the Environment<br />Royal Enclave, Srirampura, Jakkur Post, Bangalore-560064<br />Email: info@atree.org<br />Web: www.atree.org/<br />Research: ATREE deals with issues relating to the environmental, social and economic dimensions, and implications of, biological resources and natural ecosystems</p><p>Indian Institute of Science<br />Indian Institute of Science, Bangalore 560 012, Karnataka<br />Email:regr@admin.iisc.ernet.in<br />Web: www.iisc.ernet.in/<br />Research Areas: Biochemistry, ecological sciences, microbiology &amp; cell biology, molecular biophysics, molecular reproduction, development &amp; genetics.</p><p><br />Jawaharlal Nehru Centre for Advanced Scientific Research<br />Jakkur, Bangalore 560 064, Karnataka<br />Email: academic@jncasr.ac.in<br />Web: www.jncasr.ac.in/<br />Research Areas: Evolutionary and organismal biology, molecular biology and genetics.</p><p><br />National Centre for Biological Science<br />GKVK, Bellary Road,<br />Email: dean@ncbs.res.in<br />Web: www.ncbs.res.in<br />Research Areas: The research interests of the faculty range from single molecules to systems biology.</p><p><br />National Institute of Mental Health and Neurosciences<br />Bangalore 560029, Karnataka<br />Email: info@nimhans.kar.nic.in<br />Web: nimhans.kar.nic.in/<br />Research Areas: Biophysics, biostatistics, clinical psychology, epidemiology, human genetics, mental health education, neuroanaesthesia, neurochemistry, neuro imaging and interventional radiology, neurology, neuromicrobiology, neuropathology, neurophysiology, neurosurgery, neurovirology.</p><p><br />Stem Cell Institute<br />NCBS, GKVK, Bellary Road,<br />Email: ramas@ncbs.res.in<br />Web: underconstruction</p><p><br />University of Agricultural Sciences<br />GKVK, Bangalore 5600065, Karnataka<br />Email: root@uas.kar.nic.in<br />Web: uasbng.kar.nic.in/Default.htm<br />BARODA</p><p>Maharaja Sayajirao University of Baroda<br />Fatehgunj, Vadodara 390 002, Gujarat<br />Web: msubaroda.ac.in/</p><p>BHOPAL <br />Indian Institute of Science Education and Research&ndash;Bhopal<br />Govindpura, Bhopal - 23<br />E-mail: director@iiserbhopal.ac.in<br />Web: www.iiserbhopal.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br />BHUBANESHWAR <br />Institute of Life Sciences<br />Bhubaneswar 751 023, Orissa<br />Web: www.ils.res.in<br />Research Areas: Cancer, malaria, age diseases, stress biology, ecophysiology, plant molecular physiology, filariasis, tuberculosis, bio-perspecitve, agricultural biotechnology, bio-informatics.</p><p><br />National Institute of Science Education and Research &ndash; Bhubaneshwar<br />Institute of Physics Campus, Bhubaneswar, Orissa - 751 005,<br />e-mail : director@niser.ac.in<br />Web: www.niser.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics.</p><p><br />Regional Research Laboratory<br />Bhubaneswar 751 013, Orissa<br />Email: root@csrrlbhu.ren.nic.in<br />Web: www.icast.org.in/csir/rrl_bhu.html<br />Research Areas: Survey &amp; cultivation of aromatic, medicinal and other economic plants.</p><p><br />Utkal University<br />Vani Vihar, Bhubaneswar 751 004, Orissa<br />Web: www.utkaluniversity.org/<br />CHANDIGARH <br />Indian Institute of Science Education and Research &ndash;Mohali<br />Chandigarh<br />Email: webmaster@iisermohali.ac.in<br />Web: www.iisermohali.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology,<br />chemistry, math and physics</p><p><br />Institute of Microbial Technology<br />Sector 39&ndash;A, Chandigarh 160 036<br />Email: raghava@imtech.res.in<br />Web: www.imtech.res.in/<br />Research Areas: Molecular biology and microbial genetics,<br />animal cell/tissue culture and protein engineering.</p><p><br />Panjab University<br />Chandigarh 160 014<br />Email: pulib@puchd.ren.nic.in<br />Web: www.puchd.ac.in/</p><p><br />Postgraduate institute of Medical Education and Research<br />Sector-12, Chandigarh, 160 012<br />Email: pgimer@chd.nic.in<br />Web: pgimer.nic.in/<br />Research Areas: Obstetrics and gynaecology, psychiatry,<br />biochemistry, haematology, clinical parasitology etc.<br />CHENNAI <br />Indian Institute of Technology Madras<br />Chennai 600 036, Tamil Nadu<br />Email: tppro@acer.iitm.ernet.in<br />Web: www.iitm.ac.in<br />Research Areas: Engineering: Biotechnology.</p><p><br />University of Madras<br />University Centenary Building, Chepauk, Chennai 600 005, Tamil Nadu<br />Email: webmaster@unom.ac.in<br />Web: www.unom.ac.in/ <br />DARJEELING <br />University of North Bengal<br />Raja Rammohunpur, Darjeeling 734 430, West Bengal<br />Email:(Registrar): regnbu@dte.vsnl.net.in<br />Web: www.nbu.ac.in/<br />DELHI <br />All India Institute of Medical Sciences<br />New Delhi<br />Email: webmastr@aiims.ac.in<br />Web: www.aiims.ac.in/</p><p><br />Institute of Genomics and Integrative Biology<br />Delhi University Campus, Mall Road, Delhi 110 007<br />Email: info@igib.res.in<br />Web: www.igib.res.in/<br />Research Areas: Allergy and immunology, diagnostics, genetic engineering, bio-organics and high-tech reagents.</p><p><br />Indian Institute of Technology Delhi<br />Hauz Khas, New Delhi 110 016<br />Email: malhotra@admin.iitd.ernet.in<br />Web: www.iitd.ac.in<br />Research Areas: Engineering: Biochemical engineering &amp; biotechnology.<br />International Centre for Genetic Engineering and Biotechnology</p><p><br />ICGEB Campus, Aruna Asaf Ali Marg,<br />New Delhi 110 067<br />Web: www.icgeb.trieste.it/<br />Research Areas: Mammalian biology:<br />Virology immunology, malaria,<br />recombinant gene products,<br />Plant molecular biology, plant transformation,<br />insect resistance, plant resistance.</p><p><br />Jawaharlal Nehru University<br />New Delhi<br />Email: webmaster@mail.jnu.ac.in<br />Web: www.jnu.ac.in</p><p><br />National Centre for Plant Genome Research<br />JNU Campus, New Delhi<br />Email: tapas_s3@yahoo.co.in<br />Web: ncpgr.nic.in/<br />Research Areas: Nutritional, structural, and functional genomics of various plant systems.</p><p><br />National Institute of Immunology<br />Aruna Asaf Ali Marg, New Delhi 110 067<br />Web: www.nii.res.in/<br />Research Areas: Gene regulation, immunity &amp; infection, molecular design, reproduction &amp; development.</p><p><br />TERI University<br />Vasant Kunj, New Delhi - 110 070 / India<br />E-mail: registrar@teri.res.in<br />Web: www.teriuniversity.ac.in<br />Research Areas: Environmental Studies, Natural Resources Management, Climate Science and Policy, Plant Biotechnology</p><p><br />University of Delhi<br />University Road, Delhi 110 007<br />Email: webmaster@du.ac.in<br />Web: www.du.ac.in/<br />GOA <br />National Centre for Antarctic and Ocean Research<br />Headland Sada, Vasco-da-Gama 403 804, Goa<br />Email: info@ncaor.org<br />Research Areas: Co&ndash;ordination and implementation of the Indian Antarctic Programme.<br /> <br /> <br />National Institute of Oceanography<br />Dona Paula 403 004, Goa<br />Email: webmaster@darya.nio.org<br />Web: www.nio.org/<br />Research Areas: International geosphere-bio-sphere programme, marine biotechnology.<br />GURGAON <br />National Brain Research Centre<br />Near NSG Campus, Nainwal Mode, Manesar, Gurgaon, Haryana<br />Email: info@nbrc.ac.in<br />Web: www.nbrc.ac.in/<br />Research Areas: Brain research.<br />GUWAHATI <br />Indian Institute of Technology Guwahati<br />North Guwahati, Guwahati 781 039, Assam<br />Email: mcb@iitg.ernet.in<br />Web: www.iitg.ernet.in<br />Research Areas: Engineering: Biotechnology.<br /> <br /> <br />Gauhati University<br />Gopinath Bordoloi Nagar, Guwahati 781 014, Assam<br />Web: http://www.gauhati.ac.in/.<br />HYDERABAD <br />Centre for Cellular &amp; Molecular Biology<br />Uppal Road, Hyderabad 500 007, Andhra Pradesh<br />Email: (Director): lalji@ccmb.res.in<br />Web: www.ccmb.res.in/<br />Research Areas: Biophysics &amp; biochemistry, molecular biology, genetics &amp; evolution, biomedicines &amp; biotechnology.<br /> <br /> <br />Centre for DNA Fingerprinting and Diagnostics<br />CDFD, Bldg. 7, Gruhakalpa, 5-4-399/B, Nampally, Hyderabad - 500 001.<br />Email: director@cdfd.org.in<br />Web: www.cdfd.org.in/<br />Research Areas: Automated genome analysis, bacterial genetics, cancer biology, cell biology &amp; gene expression, computational biology, computational &amp; functional genomics, immunology, mammalian genetics, molecular genetics, molecular oncology, molecular virology, structural biology, transcription, developmental neuroscience and drosophila genetics.<br /> <br /> <br />Indian Institute of Chemical Technology<br />Uppal Road, Hyderabad 500 007, Andhra Pradesh<br />Email: kvr@iict.ap.nic.in, sampath@iict.ap.nic.in<br />Web: www.iictindia.org/<br />Research Areas: Pesticides, drugs, organic intermediates and fine chemicals.<br /> <br /> <br />LV Prasad Eye Intstitute<br />Hyderabad, Andhra Pradesh, India<br />Email: communications@lvpei.org<br />Web: www.lvpei.org/<br />LVPEI is a World Health Organization Collaborating Center for Prevention of Blindness. Equipped with cutting-edge technology and distinguished professionals in the field of Eye care<br /> <br /> <br />University of Hyderabad<br />P.O. Central University, Gachibowli, Hyderabad 500 046, Andhra Pradesh<br />Email: trctcs@uohyd.ernet.in<br />Web: www.uohyd.ernet.in/<br />IMPHAL <br />Institute of Bioresources and Sustainable Development<br />Takyelpat, Imphal 795 001, Manipur<br />Email: ibsd_imp@sancharnet.in, ibsd-imphal@man.nic.in<br />Web: ibsd-imphal.nic.in/<br />Research Areas: Conservation of biodiversity and sustainable utilisation of biodiversity.<br />ITANAGAR <br />North Eastern Regional Institute of Science and Technology<br />Itanagar, Nirjuli, Papumpare 791 109, Arunachal Pradesh<br />Email: dir@nerist.ernet.in<br />Web: www.nerist.ac.in/<br />Research Areas: Agricultural engineering, forestry.<br />JAIPUR <br />University of Rajasthan<br />Jaipur 320 004, Rajasthan<br />Email: info@uniraj.org<br />Web: www.uniraj.org/<br />JAMMU and KASHMIR <br />Regional Research Laboratory<br />Canal Road, Jammu 130 001, Jammu &amp; Kashmir<br />Email: (Director): qazi_gn@yahoo.com, root@csrrljm.ren.nic.in<br />Web: www.rrljammu.org/<br />Research Areas: Natural products &amp; organic chemistry, improvement &amp; cultivation of medicinal and aromatic plants, post harvest technology and applied microbiology &amp; mutation genetics.<br /> <br />University of Jammu<br />Jammu 180 006, Jammu &amp; Kashmir<br />Web: www.jammuuniversity.org/<br /> <br />University of Kashmir<br />Hazratbal,Srinagar-190006,Jammu and Kashmir<br />Email: info@kashmiruniversity.net<br />Web: http://www.kashmiruniversity.net/<br /> <br />Sher-i-Kashmir Institute of Medical Science (SKIMS)<br />Srinagar, Jammu and Kashmir<br />Email: skimsweb@gmail.com<br />Web: http://www.skims.ac.in/<br /> <br />Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST)<br />Shalimar Campus, Srinagar - 191121 Jammu and Kashmir<br />Email: skuastkashmir@gmail.com<br />Web: http://www.skuastkashmir.ac.in/<br />Research Areas: Agricultural Sciences, fisheries and veterinary sciences.<br />JORHAT <br />Regional Research Laboratory<br />Jorhat 785 006, Assam<br />Email: drrljt@csir.res.in, inform@csir.res.in<br />Web: jorhat.nic.in/rrl.htm<br />Research Areas: Agrochemicals, drugs and drug intermediates, organic chemistry, biochemistry.<br />KANPUR <br />Indian Institute of Technology Kanpur<br />GT Road, Kalyanpur, Kanpur 208 016, Uttar Pradesh<br />Email: infocell@iitk.ac.in<br />Web: www.iitk.ac.in/<br />Research Areas: Engineering: Biological sciences &amp; bioengineering.<br />KHARAGPUR <br />Indian Institute of Technology Kharagpur<br />Kharagpur 721 302, West Bengal<br />Email: (PRO): ashok@hijli.iitkgp.ernet.in<br />Web: www.iitkgp.ernet.in/<br />Research Areas: Engineering: Biotechnology.<br />KOCHI <br />Cochin University of Science and Technology<br />South Kalamessery, Kochi 682 022, Kerala<br />Email: webmaster@cusat.ac.in<br />Web: www.cusat.ac.in/.<br />KOLKATA <br />Bose Institute<br />93/1, Acharya Prafulla Chandra Road, Kolkata 700 009, West Bengal<br />Email: sidroy@bic.boseinst.ernet.in<br />Web: www.boseinstitute.org/<br />Research Areas: Bioinformatics &amp; computational biology, structure and functional dynamics of biomolecules, drug modeling, molecular genetics of microbes, transgenic plants etc.<br /> <br /> <br />Indian Institute of Chemical Biology<br />4, Raja S.C. Mullick Road, Jadavpur, Kolkata 700 032, West Bengal<br />Email: (Director): director@iicb.res.in<br />Web: www.iicb.res.in/<br />Research Areas: Natural products of medicinal, biological and industrial value, immunoassay techniques, tissue-targeted drug-delivery system.<br /> <br /> <br />Indian Institute of Science Education and Research &ndash;Kolkata<br />Mohanpur, Nadia, West Bengal<br />Web: www.iiserkol.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Indian Statistical Institute, Kolkata<br />203 Barrackpore Trunk Road, Kolkata 700 108, West Bengal<br />Email: postmaster@isical.ac.in<br />Web: www.isical.ac.in/<br />Research Areas: Agricultural and ecological research, biological anthropology, human genetics.<br /> <br /> <br />Jadavpur University<br />188 Raja S.C. Mallik Road, Kolkata 700 032, West Bengal<br />Email: registrar@jdvu.ac.in<br />Web: www.jadavpur.edu/<br /> <br /> <br />University of Calcutta<br />Kolkata 700 009, West Bengal<br />Web: www.kolkata.org/cu/<br />KURUKSHETRA <br />Kurukshetra University<br />Kurukshetra 136 119, Haryana<br />Email: jskadian@rediffmail.com<br />Web: kuk.ernet.in/<br />LUCKNOW <br />Birbal Sahni Institute of Palaeobotany<br />53 University Road, Lucknow, Uttar Pradesh<br />Email: director@bsip.res.in<br />Web: www.bsip-india.org/index.htm<br />Research Areas: Botanical palaeobotany: Morphotaxonomy, palaeoecology, palaeogeography, phylogeny and evolution.<br /> <br /> <br />Central Drug Research Institute<br />Chattar Manzil Palace, Post Box No. 173, Lucknow 226 001, Uttar Pradesh<br />Email: info@cdriindia.org<br />Web: www.cdriindia.org/<br />Research Areas: Development of contraceptives, new drugs for tropical diseases (malaria, filariasis, leishmaniasis), cardio-vascular and central nervous system disorders.<br /> <br /> <br />Indian Institute of Science Education and Research &ndash;Kolkata<br />Mohanpur, Nadia, West Bengal<br />Web: www.iiserkol.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Indian Statistical Institute, Kolkata<br />203 Barrackpore Trunk Road, Kolkata 700 108, West Bengal<br />Email: postmaster@isical.ac.in<br />Web: www.isical.ac.in/<br />Research Areas: Agricultural and ecological research, biological anthropology, human genetics.<br /> <br /> <br />Central Institute of Medicinal and Aromatic Plants<br />Lucknow 226 015, Uttar Pradesh<br />Email: director@cimap.res.in<br />Web: www.cimap.res.in/<br />Research Areas: Agrotechnologies for medicinal and aromatic plants, phytochemistry, plant physiology and biochemistry, pathology, genetics, entomology and pharmacognosy.<br /> <br /> <br />Industrial Toxicology Research Centre<br />Mahatma Gandhi Marg, P.O. Box No. 80, Lucknow 226 001, Uttar Pradesh<br />Email: info@itrcindia.org<br />Web: www.itrcindia.org/<br />Research Areas: Neurotoxicology, environmental health, immunotoxicology and environmental biotechnology.<br /> <br /> <br />National Botanical Research Institute<br />Rana Pratap Marg, Lucknow 226 001, Uttar Pradesh<br />Email: p.pushpangadan@nbri.res.in<br />Web: www.nbri-lko.org/<br />Research Areas: Plant biotechnology, environmental sciences, taxonomy and ethnobotany, plant molecular biology.<br />MUMBAI <br />Advanced Centre for Treatment, Research and Education in Cancer (ACTREC)<br />Tata Memorial Centre, Navi Mumbai - 410 210<br />Web: www.actrec.gov.in/<br />Research Areas: Research investigations currently focus on molecular mechanisms of cancer, drug development and emerging therapies for treatment and prevention of cancer.<br /> <br /> <br />Bhabha Atomic Research Centre<br />Trombay, Mumbai 400 085, Maharashtra<br />Email: webmaster@magnum.barc.ernet.in<br />Web: www.barc.ernet.in/<br />Research Areas: Chemical and life sciences, nuclear agriculture.<br /> <br /> <br />Bombay Natural History Society<br />Hornbill House, Shaheed Bhagat Singh Road, Mumbai 400 023, Maharashtra<br />Email: bnhs@bom4.vsnl.net.in<br />Web: www.bnhs.org/<br /> <br /> <br />Indian Institute of Technology Bombay<br />Powai, Mumbai 400 076, Maharashtra<br />Email: registrar@iitb.ac.in<br />Web: www.iitb.ac.in/<br />Research Areas: Earth sciences; Science: Biology, chemistry, mathematics, physics.<br /> <br /> <br />Tata Institute of Fundamental Research<br />Homi Bhabha Road, Navy Nagar, Colaba, Mumbai 400 005.<br />Web: www.tifr.res.in/<br />Department of Biological Sciences: www.tifr.res.in/~dbs<br />Research Areas: TIFR is a multidisciplinary research organisation working in the area of Natural Sciences (Biology, Chemistry, and Physics), Mathematics and Computer Science.<br /> <br /> <br />University of Mumbai<br />Vidyanagari, Kalina, Santa Cruz (W), Mumbai 400 098, Maharashtra<br />Web: www.mu.ac.in/<br /> <br /> <br />National Botanical Research Institute<br />Rana Pratap Marg, Lucknow 226 001, Uttar Pradesh<br />Email: p.pushpangadan@nbri.res.in<br />Web: www.nbri-lko.org/<br />Research Areas: Plant biotechnology, environmental sciences, taxonomy and ethnobotany, plant molecular biology.<br />NAGPUR <br />National Environmental Engineering Research Institute<br />Nehru Marg, Nagpur 440 020, Maharashtra<br />Email: dirneeri@nagpur.dot.net.in<br />Web: www.neeri.nic.in/<br />Research Areas: Environmental biotechnology.<br />PUNE <br />Agharkar Research Institute<br />G.G. Agarkar Road, Pune 411 004, Maharashtra<br />Web: www.aripune.org/<br />Research Areas: Animal sciences, microbial sciences, plant sciences.<br /> <br /> <br />Indian Institute of Science Education and Research&ndash;Pune<br />Email: director@iiserpune.ac.in<br />Web: www.iiserpune.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics.<br /> <br /> <br />National Chemical Laboratory<br />Dr. Homi Bhabha Road, Pune 411 008, Maharashtra<br />Email: director@ems.ncl.res.in<br />Web: www.ncl-india.org/<br />Research Areas: biotechnology, biochemistry.&gt;<br /> <br /> <br />National Centre for Cell Sciences<br />NCCS Complex, Ganeshkhind, Pune 411 007, Maharashtra<br />Email: infonccs@giaspn01.vsnl.net.in<br />Web: www.nccs.res.in/<br />Research Areas: Cell biology, molecular biology, immunology, parasitology, hybridoma technology, tissue banking &amp; tissue engineering, regenerative biology, virology (HIV), cancer biology, diabetes, cryobiology transplantation, gene therapy.<br /> <br /> <br />University of Pune<br />Ganeshkhind Road, Pune 411 007, Maharashtra Telephone: 020-5601305<br />Email: Registrar): regis@unipune.ernet.in<br />Web: www.unipune.ernet.in/<br />PALAMPUR <br />Institute of Himalayan Bioresource Technology<br />Post Box No. 6, Palampur 176 061, Himachal Pradesh<br />Email: root@csihbt.ren.nic.in, director@ihbt.csir.res.in<br />Web: www.icast.org.in/csir/ihbt.html<br />Research Areas: Floriculture, tea sciences, biotechnology and natural plant products.<br />PATIALA <br />Punjabi University<br />Patiala 147 002, Punjab<br />Email: ucc@pbi.ac.in<br />Web: www.universitypunjabi.org/<br />PILANI <br />Birla Institute of Technology and Science<br />Vidhya Vihar Campus, Pilani, 333 031, Rajasthan<br />Email: mmsanand@bits-pilani.ac.in<br />Web: www.bits-pilani.ac.in/<br />ROORKEE <br />Indian Institute of Technology Roorkee<br />Roorkee 247 667, Uttaranchal<br />Email: (Registrar): regis@iitr.ernet.in<br />Web: www.iitr.ernet.in/<br />Research Areas: Engineering: Biotechnology.<br />SHANTINIKETAN <br />Visva-Bharati University<br />Santiniketan, Birbhum 731 235, West Bengal<br />Email: Root@vbharat.ernet.in<br />Web: www.visva-bharati.ac.in/<br />SHILLONG <br />North-Eastern Hill University<br />Umshing, Shillong 793 022, Meghalaya<br />Email: admin@nehu.ac.in<br />Web: www.nehu.ac.in/<br />SILCHAR <br />Assam University<br />P.O. Box 63, Silchar 788 011, Assam<br />Email: auliba@sancharnet.in, asokesen@sancharnet.in<br />Web: assamuniversity.nic.in/<br />TRIVANDUM <br />Indian Institute of Science Education and Research&ndash;Trivandum<br />Trivandrum, Kerala,India.<br />Web: www.iisertvm.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Rajiv Gandhi Centre for Biotechnology<br />Thycaud P.O., Thiruvananthapuram 695 , Kerala<br />Email: info@rgcb.res.in<br />Web: rgcb.res.in/<br />Research Areas: Disease biology and molecular medicine, Plant biotechnology<br /> <br /> <br />Regional Research Laboratory<br />Industrial Estate P.O., Pappanamcode, Thiruvananthapuram 695 019, Kerala<br />Email: root@csrrltrd.ren.nic.in<br />Web: w3rrlt.csir.res.in/<br />Research Areas: Chemistry of natural products, agroprocessing, photochemical systems including solar energy conversion, analysis of pollutants and waste-water technology.<br /> <br />VARANASI <br />Banaras Hindu University<br />Varanasi 221 005, Uttar Pradesh<br />Email: webmaster@bhu.ac.in<br />Web: www.bhu.ac.in/index.html<br /> <br />Rajiv Gandhi Centre for Biotechnology<br />Thycaud P.O., Thiruvananthapuram 695 , Kerala<br />Email: info@rgcb.res.in<br />Web: rgcb.res.in/<br />Research Areas: Disease biology and molecular medicine, Plant biotechnology<br /> <br /> <br />Indian Council for Agricultural Research<br />Main Web site: www.icar.org.in/<br />Research Institutes under ICAR: www.icar.org.in/icar15.html<br /> <br /> <br />CSIR Laboratories<br />Main CSIR website&ndash;www.csir.res.in/</p><p>-------------------------------</p><p>Department of Atomic Energy<br />Main CSIR website&ndash;www.barc.ernet.in/<br /> <br /> <br />Department of Biotechnology<br />Main CSIR website&ndash;dbtindia.nic.in/index.asp</p><p>&nbsp;</p><p>Dept. of Science &amp; Technology<br />Main Website: Main Website: www.dst.gov.in/<br /> <br /> <br />Indian Council for Medical Research<br />Main Web site: icmr.nic.in/<br />Research Institutes under ICMR: icmr.nic.in/institute.htm#Permanent%20Institutes/Centres</p><p>Ministry of Environment and Forest<br />Main Web site: envfor.nic.in/<br />Research Institutes under ICAR: cyberjournalist.org.in/linksr.html</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38385/decipher-a-software-toolset-for-deciphering-and-managing-biological-sequences-efficiently-using-the-r</guid>
	<pubDate>Sun, 09 Dec 2018 19:06:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38385/decipher-a-software-toolset-for-deciphering-and-managing-biological-sequences-efficiently-using-the-r</link>
	<title><![CDATA[DECIPHER; a software toolset for deciphering and managing biological sequences efficiently using the R]]></title>
	<description><![CDATA[<p><span>DECIPHER is a software toolset that can be used for deciphering and managing biological sequences efficiently using the&nbsp;</span><a href="http://www.r-project.org/">R</a><span>&nbsp;programming language. The&nbsp;</span><a href="http://www.r-project.org/">R</a><span>&nbsp;package is distributed as platform independent source code under the&nbsp;</span><a href="http://www.gnu.org/copyleft/gpl.html">GPL version 3 license</a><span>. Some functionality of the program is accessible online through web tools.</span></p>
<p><span style="font-size: medium; text-align: justify;">&nbsp;</span></p><p>Address of the bookmark: <a href="http://www2.decipher.codes/" rel="nofollow">http://www2.decipher.codes/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27679/cluego</guid>
	<pubDate>Thu, 02 Jun 2016 09:51:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27679/cluego</link>
	<title><![CDATA[ClueGO]]></title>
	<description><![CDATA[<p>ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.</p><p>Address of the bookmark: <a href="http://www.ici.upmc.fr/cluego/" rel="nofollow">http://www.ici.upmc.fr/cluego/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/2261/best-book-titles-for-learning-bionformatics</guid>
	<pubDate>Tue, 13 Aug 2013 17:31:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/2261/best-book-titles-for-learning-bionformatics</link>
	<title><![CDATA[Best book Titles for Learning Bionformatics]]></title>
	<description><![CDATA[<p>Nothing can add to our intellect more than reading a book. &nbsp;In books, we can experience new things that we would not normally be able to experience. It is proved that books can change our lives and other people&rsquo;s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn&rsquo;t know anything that we know today. There are several book, online and offile to read and I can't mentioned all of them here in the list. Therefore, I mentioned some bioinformatics and its related books in subgroups. Hope you will like the list.&nbsp;</p><p>Sequence Analysis and General Bioinformatics</p><ul>
<li>BLAST, Ian Korf, Mark Yandell, Joseph Bedell, 2003, O'Reilly</li>
<li>Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl Leon, 2003, O'Reilly</li>
<li>Bioinformatics for Geneticists, Michael Barnes, Ian C Gray (Editors), 2003, John Wiley &amp; Sons</li>
<li>Bioinformatics for Dummies, Jean-Michel Claverie, Cedric Notredame, 2003, John Wiley &amp; Sons</li>
<li>Mathematics of Genome Analysis, Jerome K. Percus, 2002, Cambridge Univ Press</li>
<li>Bioinformatics Computing, Bryan P. Bergeron, 2002, Prentice Hall</li>
<li>Evolutionary Computation in Bioinformatics, Gary B. Fogel, David W. Corne (Editors), 2002, Morgan Kaufmann</li>
<li>Introduction to Bioinformatics, Arthur M. Lesk, 2002, Oxford University Press</li>
<li>Instant Notes in Bioinformatics, D.R. Westhead, J. H. Parish, R.M. Twyman, 2002, Bios Scientific Pub</li>
<li>Fundamental Concepts of Bioinformatics, Dan E. Krane, Michael L. Raymer, Michaeel L. Raymer, Elaine Nicpon Marieb, 2002, Benjamin/Cummings</li>
<li>Essentials of Genomics and Bioinformatics, C. W. Sensen (Editor), 2002, John Wiley &amp; Sons</li>
<li>Current Topics in Computational Molecular Biology (Computational Molecular Biology), Tao Jiang, Ying Xu, Michael Zhang (Editors), 2002, MIT Press</li>
<li>Hidden Markov Models for Bioinformatics, Timo Koski, Timo Koskinen, 2001, Kluwer Academic Publishers</li>
<li>Bioinformatics: From Genomes to Drugs, Thomas Lengauer (Editor), 2001, John Wiley &amp; Sons</li>
<li>Statistical Methods in Bioinformatics: An Introduction (Statistics for Biology and Health), Warren Ewens, Gregory Grant, 2001, Springer Verlag</li>
<li>Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Second Edition, Andreas D. Baxevanis, B. F. Francis Ouellette, 2001, Wiley-Interscience</li>
<li>Bioinformatics: The Machine Learning Approach, Second Edition (Adaptive Computation and Machine Learning), Pierre Baldi, Soren Brunak, Sren Brunak, 2001, MIT Press</li>
<li>Introduction to Bioinformatics, T eresa Attwood, David Parry-Smith, 2001, Prentice Hall</li>
<li>Bioinformatics: A Primer, Charles Staben, 2001, Jones &amp; Bartlett Pub</li>
<li>Data Analysis and Classification for Bioinformatics, Arun Jagota, 2000, AKJ Academics</li>
<li>Bioinformatics: Sequence and Genome Analysis, David W. Mount, 2001, Cold Spring Harbor Laboratory Press</li>
<li>Bioinformatics: A Biologist's Guide to Biocomputing and the Internet, Stuart M. Brown, 2000, Eaton Pub Co</li>
<li>Bioinformatics: Sequence, Structure and Databanks: A Practical Approach (The Practical Approach Series, 236), Des Higgins (Editor), Willie Taylor (Editor), 2000, Oxford Univ Press</li>
<li>Neural Networks and Genome Informatics, Cathy H. Wu, Jerry W. McLarty, 2000, Elsevier Science</li>
<li>Computational Molecular Biology: An Introduction (Wiley Series in Mathematical and Computational Biology), Peter Clote and Rolf Backofen, 2000, John Wiley &amp; Sons</li>
<li>Computational Molecular Biology: An Algorithmic Approach, Pavel A. Pevzner, 2000, MIT Press</li>
<li>Post-Genome Informatics, Minoru Kanehisa, 2000, Oxford Univ Press</li>
<li>Mathematical and Computational Biology: Computational Morphogenesis, Hierarchical Complexity, and Digital Evolution, Chrystopher L. Nehaniv, 1999, American Mathematical Society</li>
<li>Pattern Discovery in Biomolecular Data: Tools, Techniques, and Applications, Jason T. L. Wang, Bruce A. Shapiro, Dennis Elliott Shasha (Editors), 1999, Oxford Univ Press</li>
<li>Time Warps, String Edits, and Macromolecules: The Theory and Practice of Sequence Comparison, David Sankoff and Joseph Kruskal (Editors), 1999, Cambridge University Press</li>
<li>Bioinformatics Basics: Applications in Biological Science and Medicine, Hooman Rashidi, 1999, CRC Press</li>
<li>Bioinformatics: Methods and Protocols (Methods in Molecular Biology, Vol 132), Stephen Misener and Stephen A. Krawetz (Editors),1999, Humana Press</li>
<li>Bioinformatics: Databases and Systems, Stanley Letovsky (Editor),1999, Kluwer Academic Publishers</li>
<li>Computational Molecular Biology, P. Green, 1998, Blackwell Science Inc.</li>
<li>Computational Methods in Molecular Biology (New Comprehensive Biochemistry, V. 32), Steven L. Salzberg, David B. Searls, Simon Kasif (Editors), 1998, Elsevier Science Ltd.</li>
<li>Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Richard Durbin, S. Eddy, A. Krogh, G. Mitchison, 1998, Cambridge University Press</li>
<li>Guide to Human Genome Computing, M. J. Bishop (Editor), 1998, Academic Press</li>
<li>Introduction to Computational Molecular Biology, Joao Meidanis, Joao C. Setabal, 1997, PWS Pub. Co.</li>
<li>Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology, Dan Gusfield, 1997, Cambridge University Press</li>
<li>Sequence Data Analysis Guidebook, Simon R. Swindell (Editor), 1997, Humana Press</li>
<li>High Performance Computational Methods for Biological Sequence Analysis, Tieng K. Yap, Ophir Frieder, Robert L. Martino, 1996, Kluwer Academic Pub.</li>
<li>Computer Methods for Macromolecular Sequence Analysis, Methods in Enzymology, volume 266, Russell F. Doolittle (Editor), 1996, Academic Press</li>
<li>DNA and Protein Sequence Analysis: A Practical Approach (Practical Approach Series , No 171), 1996, M. J. Bishop and C. J. Rawlings (Editors), 1996, IRL Press</li>
<li>Molecular Bioinformatics: Algorithms and Applications, Steffen Schulze-Kremer, 1995, Walter De Gruyter</li>
<li>Introduction to Computational Biology - Maps, sequences and genomes, Michael S. Waterman, 1995, Chapman &amp; Hall</li>
<li>Computer Analysis of Sequence Data, Annette M. Griffin and Hugh G. Griffin (Editors), 1994, Humana Press</li>
<li>Artificial Intelligence and Molecular Biology, Lawrence Hunter (Editor), 1993, AAAI Press</li>
<li>Sequence Analysis Primer, Michael Gribskov and John Devereux (Editors), 1992, Oxford University Press</li>
<li>Mathematical Methods of Analysis of Biopolymer Sequences (Dimacs Series in Discrete Mathematics and Theoretical Computer Science ; Volume 8), S. G. Gindikin, 1992, American Mathematical Society</li>
<li>Mathematical Methods for DNA Sequences, Michael S. Waterman (Editor), 1989, CRC Press</li>
</ul><p>Programming Books for Bioinformatics</p><ul>
<li>Mastering Perl for Bioinformatics, James D. Tisdall, 2003, O'Reilly</li>
<li>Genomic Perl: From Bioinformatics Basics to Working Code, Rex A. Dwyer, 2002, Cambridge University Press</li>
<li>Beginning Perl for Bioinformatics, James Tisdall, 2001, O'Reilly</li>
<li>Developing Bioinformatics Computer Skills, Cynthia Gibas, Per Jambeck, 2001, O'Reilly</li>
</ul><p>General Genomics</p><ul>
<li>Functional Microbial Genomics (Volume 33), Brendan Wren, Nick Dorrell, 2003, Academic Press</li>
<li>Discovering Genomics, Proteomics, and Bioinformatics, A. Malcolm Campbell, Laurie J. Heyer, 2002, Benjamin/Cummings</li>
<li>Genomes, Terence A. Brown, 2002, John Wiley &amp; Sons</li>
<li>Essentials of Medical Genomics, Stuart M. Brown , 2002, John Wiley &amp; Sons</li>
<li>A Primer of Genome Science, Greg Gibson, Spencer V. Muse, 2002, Sinauer Associates</li>
<li>Pathogen Genomics: Impact on Human Health, Karen Joy, Phd Shaw (Editors), 2002, Humana Press</li>
<li>Genomics, John E. Antonopoulos, 2000, Xlibris Corporation</li>
<li>Genomics and Proteomics: Functional and Computational Aspects, Sandor Suhai (Editor), 2000, Plenum Pub Corp</li>
<li>Functional Genomics: A Practical Approach (The Practical Approach Series, 235), S. Hunt and F. Livesey (Editors), 2000, Oxford Univ Press</li>
<li>Human Molecular Genetics, Andrew P. Read, Tom Strachan 1999, BIOS Scientific Publishers Ltd.</li>
<li>Genomics: The Science and Technology Behind the Human Genome Project, Charles R. Cantor and Cassandra L. Smith, 1999, John Wiley &amp; Sons</li>
<li>Cells: A Laboratory Manual, 3 volumes, David L. Spector, Robert D. Goldman, Leslie A. Leinwand, 1998, Cold Spring Harbor Laboratory Press</li>
<li>Genome Analysis: A Laboratory Manual, 4 volumes, Bruce Birren, et al. (Editors), 1997, Cold Spring Harbor Laboratory Press</li>
<li>The Human Genome Project, N. G. Cooper (Editor), 1994, University Science Books</li>
</ul><p>Comparative Genomics</p><ul>
<li>Handbook of Comparative Genomics: Principles and Methodology, Cecilia Saccone, Graziano Pesole, 2003, Wiley-Liss</li>
<li>Sequence - Evolution - Function: Computational Approaches in Comparative Genomics, Eugene V. Koonin, Michael Y. Galperin, 2002, Kluwer Academic Publishers</li>
<li>Comparative Genomics - Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Families, David Sankoff and Joseph H. Nadeau, 2000, Kluwer Academic Pub</li>
<li>Comparative Genomics, Melody Clark (Editor), 2000, Kluwer Academic Pub</li>
</ul><p>Proteomics</p><ul>
<li>Proteins and Proteomics: A Laboratory Manual, Richard J. Simpson (Editor), Cold Spring Harbor Laboratory</li>
<li>Proteomics in Practice: A Laboratory Manual of Proteome Analysis , Reiner Westermeier, Tom Naven, 2002, John Wiley &amp; Sons</li>
<li>Posttranslational Modifications of Proteins: Tools for Functional Proteomics (Methods in Molecular Biology, Vol 194) , Christoph Kannicht (Editor), 2002, Humana Press</li>
<li>Peptide Arrays on Membrane Supports: Synthesis and Applications (Springer Lab Manual), Joachim Koch, Michael Mahler (Editors), 2002, Springer Verlag</li>
<li>Proteomics , Timothy Palzkill, 2002, Kluwer Academic Publishers</li>
<li>Introduction to Proteomics: Tools for the New Biology , Daniel C. Liebler (Editor), 2001, Humana Press</li>
<li>Proteome Research: Mass Spectrometry (Principles and Practice) , P. James (Editor), 2001, Springer Verlag</li>
<li>Interpreting Protein Mass Spectra: A Comprehensive Resource , A. Peter Snyder, 2000, American Chemical Society</li>
<li>Protein Sequencing and Identification Using Tandem Mass Spectrometry , Michael Kinter, Nicholas E. Sherman, 2000, Wiley-Interscience</li>
<li>From Genome to Proteome: Advances in the Practice and Application of Proteomics, Michael J. Dunn (Editor), 2000, Vch Verlagsgesellschaft Mbh</li>
<li>Proteomics: From Protein Sequence to Function, S. Pennington (Editor), M. Dunn (Editor), 2000, Springer Verlag</li>
<li>Proteome Research: Two-Dimensional Gel Electrophoresis and Detection Methods (Principles and Practice), T. Rabilloud (Editor), 2000, Springer Verlag</li>
<li>Proteome and Protein Analysis, R. M. Kamp, D. Kyriakidis, th Choli-Papadopoulou (Editor), 1999, Springer Verlag</li>
<li>Proteome Research: New Frontiers in Functional Genomics, M. R. Wilkins, et al. (Editors), 1997, Springer Verlag</li>
</ul><p>Protein Structure</p><ul>
<li>Structural Bioinformatics, Philip E. Bourne, Helge Weissig (Editors), 2003, John Wiley &amp; Sons</li>
<li>Protein Structure Prediction: Bioinfomatic Approach, I.F. Tsigelny, 2002, International University Line</li>
<li>Introduction to Protein Architecture: The Structural Biology of Proteins, Arthur M. Lesk, 2001, Oxford University Press</li>
<li>Protein Structure Prediction: Methods and Protocols, David M. Webster (Editor), 2000, Humana Press</li>
<li>Introduction to Protein Structure, Carl-Ivar Branden, John Tooze, 1999, Garland Publishing</li>
<li>Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding, Alan Fersht, 1999, Freeman</li>
</ul><p>Pharmacogenomics</p><ul>
<li>Pharmacogenomics: Social, Ethical, and Clinical Dimensions, Mark A. Rothstein (Editor), 2003, Wiley-Liss</li>
<li>Pharmacogenomics: The Search for Individualized Therapies, Julio Licinio, Ma-Li Wong (Editors), 2002, John Wiley &amp; Sons</li>
<li>Pharmacogenomics, Werner Kalow, Urs A. Meyer, Rachel Tyndale (Editors), 2001, Marcel Dekker</li>
<li>Pharmacogenetics and Pharmcogenomics: Recent Conceptual and Technical Advances (Pharmacology, Volume 61, Number 3, 2000), Elliot S. Vesell (Editor), 2000, S. Karger Publishing</li>
<li>Pharmacogenetics, Wendell Weber, 1997, Oxford University Press</li>
</ul><p>DNA Microarrays</p><ul>
<li>Statistical Analysis of Gene Expression Microarray Data, T. P. Speed (Editor), 2003, CRC Press</li>
<li>Microarray Gene Expression Data Analysis: A Beginner's Guide, Helen C. Causton, John Quackenbush, Alvis Brazma, 2003, Blackwell Publishers</li>
<li>The Analysis of Gene Expression Data (Statistics for Biology and Health), G. Parmigiani, E. S. Garrett, R. A. Irizarry, S. Zeger , Graeme Clark (Editors), 2003, Springer Verlag</li>
<li>A Practical Approach to Microarray Data Analysis, Daniel P. Berrar, Werner Dubitzky, Martin Granzow (Editors), 2002, Kluwer Academic Publishers</li>
<li>DNA Microarrays and Gene Expression: From Experiments to Data Analysis and Modeling, Pierre Baldi, G. Wesley Hatfield, 2002, Cambridge University Press</li>
<li>DNA Microarrays: A Molecular Cloning Manual, David Bowtell, Joseph Sambrook (Editors), 2002, Cold Spring Harbor Laboratory</li>
<li>DNA Array Image Analysis: Nuts &amp; Bolts, Gerda Kamberova, Shishir Shah, 2002, DNA Press</li>
<li>Microarray Analysis, Mark Schena, 2002, John Wiley &amp; Sons</li>
<li>A Biologist's Guide to Analysis of DNA Microarray Data, Steen Knudsen, 2002, John Wiley &amp; Sons</li>
<li>Microarrays for an Integrative Genomics (Computational Molecular Biology), Isaac S. Kohane, Alvin Kho, Atul J. Butte, 2002, MIT Press</li>
<li>Microarrays for the Neurosciences: An Essential Guide (Cellular and Molecular Neuroscience), Daniel H. Geschwind, Jeffrey P. Gregg (Editors), 2002, MIT Press</li>
<li>DNA Microarrays: Gene Expression Applications, Bertrand Jordan (Editor), 2001, Springer Verlag</li>
<li>DNA Arrays: Methods and Protocols (Methods in Molecular Biology, Volume 170), Jang B. Rampal (Editor), 2001, Humana Press</li>
<li>DNA Arrays: Technologies and Experimental Strategies, Elena V. Grigorenko (Editor), 2001, CRC Press</li>
<li>Microarray Biochip Technology, Mark Schena (Editor), 2000, Eaton Pub</li>
<li>Expression Genetics: Accelerated and High-Throughput Methods (Biotechniques Update Series), Michael McClelland (Editor), Arthur B. Pardee (Editor), 1999, Eaton Pub</li>
<li>DNA Microarrays: A Practical Approach (Practical Approach Series 205), Mark Schena (Editor), 1999, Oxford Univ Press</li>
<li>cDNA Preparation and Characterization (Methods in Enzymology Volume 303), S.M. Weissman (Editor), 1999, Academic Press</li>
</ul><p>Systems Biology, Genetic and Biochemical Network</p><ul>
<li>Handbook of Graphs and Networks : From the Genome to the Internet, Stefan Bornholdt, Heinz Georg Schuster (Editors), 2003, Vch Verlagsgesellschaft Mbh</li>
<li>Computational Cell Biology, Christopher Fall, Eric Marland, John Wagner, John Tyson (Editors), 2002, Springer Verlag</li>
<li>Gene Regulation and Metabolism: Post-Genomic Computational Approaches (Computational Molecular Biology), Julio Collado-Vides, Ralf Hofestadt (Editors), 2002, MIT Press</li>
<li>Foundations of Systems Biology, Hiroaki Kitano (Editor), 2001, MIT Press</li>
<li>Genomic Regulatory Systems: Development and Evolution, Eric H. Davidson , 2001, Academic Press</li>
<li>Genes &amp; Signals, Mark Ptashne, Alexander Gann, 2001, Cold Spring Harbor Laboratory</li>
<li>Computational Modeling of Genetic and Biochemical Networks (Computational Molecular Biology), James M. Bower and Hamid Bolouri (Editors), 2001, MIT Press</li>
<li>Protein-Protein Interactions: A Molecular Cloning Manual, Erica Golemis (Editor), 2001, Cold Spring Harbor Laboratory</li>
<li>Computational Analysis of Biochemical Systems: A Practical Guide for Biochemists and Molecular Biologists, Eberhard O. Voit, 2000, Cambridge University Press</li>
<li>Mathematical Physiology, James P. Keener, James Sneyd, 1998, Springer Verlag</li>
</ul><p>&nbsp;</p><p>DNA Sequencing</p><ul>
<li>DNA Sequencing: From Experimental Methods to Bioinformatics (Introduction to Biotechniques Series), Luke Alphey, 1997, Springer Verlag</li>
<li>Automated DNA sequencing and analysis, Adams M.D., Fields C., Venter J.C. (Editors), 1994, Academic Press</li>
</ul><p>&nbsp;</p><p>Apart from above mentioned books, you can also find some useful books links at following mentioned URLs:</p><p>&nbsp;</p><p><a href="http://www.amazon.com/Biological-Sequence-Analysis-Probabilistic-Proteins/dp/0521629713">http://www.amazon.com/Biological-Sequence-Analysis-Probabilistic-Proteins/dp/0521629713</a></p><p><a href="http://www.amazon.com/Bioinformatics-Genes-Proteins-Computers-Advanced/dp/1859960545">http://www.amazon.com/Bioinformatics-Genes-Proteins-Computers-Advanced/dp/1859960545</a></p><p><a href="http://www.amazon.com/Introduction-Bioinformatics-Algorithms-Computational-Molecular/dp/0262101068">http://www.amazon.com/Introduction-Bioinformatics-Algorithms-Computational-Molecular/dp/0262101068</a></p><p><a href="http://books.google.no/books?id=pxSM7R1sdeQC&amp;dq=Pierre+baldi+%2B+bioinformatics&amp;printsec=frontcover&amp;source=bn&amp;hl=en&amp;ei=IoGRS6uCIJT-NYLA8Z0N&amp;sa=X&amp;oi=book_result&amp;ct=result&amp;redir_esc=y#v=onepage&amp;q&amp;f=false">http://books.google.no/books?id=pxSM7R1sdeQC&amp;dq=Pierre+baldi+%2B+bioinformatics&amp;printsec=frontcover&amp;source=bn&amp;hl=en&amp;ei=IoGRS6uCIJT-NYLA8Z0N&amp;sa=X&amp;oi=book_result&amp;ct=result&amp;redir_esc=y#v=onepage&amp;q&amp;f=false</a></p><p><a href="http://www.amazon.com/Statistical-Methods-Bioinformatics-Introduction-Statistics/dp/0387400826">http://www.amazon.com/Statistical-Methods-Bioinformatics-Introduction-Statistics/dp/0387400826</a></p><p>&nbsp;</p><p>If you think your favourite books are not listed then please write it down in comment section for the benefits of other users.&nbsp;Feel free to add many more books in comment section.&nbsp;</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38659/detail-annotation-of-genes</guid>
	<pubDate>Fri, 11 Jan 2019 05:23:33 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38659/detail-annotation-of-genes</link>
	<title><![CDATA[Detail annotation of genes !]]></title>
	<description><![CDATA[<p>gene_info recalculated daily<br>---------------------------------------------------------------------------<br> tab-delimited<br> one line per GeneID<br> Column header line is the first line in the file.<br> Note: subsets of gene_info are available in the DATA/GENE_INFO<br> directory (described later)<br>---------------------------------------------------------------------------</p>
<p>tax_id:<br> the unique identifier provided by NCBI Taxonomy<br> for the species or strain/isolate</p>
<p>GeneID:<br> the unique identifier for a gene<br> ASN1: geneid</p>
<p>Symbol:<br> the default symbol for the gene<br> ASN1: gene-&gt;locus</p>
<p>LocusTag:<br> the LocusTag value<br> ASN1: gene-&gt;locus-tag</p>
<p>Synonyms:<br> bar-delimited set of unofficial symbols for the gene</p>
<p>dbXrefs:<br> bar-delimited set of identifiers in other databases<br> for this gene. The unit of the set is database:value.<br> Note that HGNC and MGI include 'HGNC' and 'MGI', respectively,<br> in the value part of their identifier. Consequently,<br> dbXrefs for these databases will appear like:<br> HGNC:HGNC:1100<br> This would be interpreted as database='HGNC', value='HGNC:1100'<br> Example for MGI:<br> MGI:MGI:104537<br> This would be interpreted as database='MGI', value='MGI:104537'</p>
<p>chromosome:<br> the chromosome on which this gene is placed.<br> for mitochondrial genomes, the value 'MT' is used.</p>
<p>map location:<br> the map location for this gene</p>
<p>description:<br> a descriptive name for this gene</p>
<p>type of gene:<br> the type assigned to the gene according to the list of options<br> provided in https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn</p>
<p><br>Symbol from nomenclature authority:<br> when not '-', indicates that this symbol is from a<br> a nomenclature authority</p>
<p>Full name from nomenclature authority:<br> when not '-', indicates that this full name is from a<br> a nomenclature authority</p>
<p>Nomenclature status:<br> when not '-', indicates the status of the name from the <br> nomenclature authority (O for official, I for interim)</p>
<p>Other designations:<br> pipe-delimited set of some alternate descriptions that<br> have been assigned to a GeneID<br> '-' indicates none is being reported.</p>
<p>Modification date:<br> the last date a gene record was updated, in YYYYMMDD format</p>
<p>Feature type:<br> pipe-delimited set of annotated features and their classes or <br> controlled vocabularies, displayed as feature_type:feature_class <br> or feature_type:controlled_vocabulary, when appropriate; derived <br> from select feature annotations on RefSeq(s) associated with the <br> GeneID</p><p>Address of the bookmark: <a href="ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/" rel="nofollow">ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43011/deg-50-a-database-of-essential-genes-in-both-prokaryotes-and-eukaryotes</guid>
	<pubDate>Tue, 30 Mar 2021 11:47:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43011/deg-50-a-database-of-essential-genes-in-both-prokaryotes-and-eukaryotes</link>
	<title><![CDATA[DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes]]></title>
	<description><![CDATA[<p><span>Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a key role in the emerging field, synthetic biology. </span></p>
<p><span></span><span>DEG is freely available at the website&nbsp;</span><a href="http://tubic.tju.edu.cn/deg" target="_blank">http://tubic.tju.edu.cn/deg</a><span>&nbsp;or&nbsp;</span><a href="http://www.essentialgene.org/" target="_blank">http://www.essentialgene.org</a><span>.</span></p><p>Address of the bookmark: <a href="http://www.essentialgene.org/" rel="nofollow">http://www.essentialgene.org/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44468/orthoflow-workflow-for-phylogenetic-inference-of-genome-scale-datasets-of-protein-coding-genes</guid>
	<pubDate>Wed, 21 Feb 2024 06:13:08 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44468/orthoflow-workflow-for-phylogenetic-inference-of-genome-scale-datasets-of-protein-coding-genes</link>
	<title><![CDATA[Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes]]></title>
	<description><![CDATA[<p><span>Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files containing CDSs. It uses several state of the art inference methods for orthology inference, either based on HMM profiles or de novo inference of orthogroups. Through the use of OrthoSNAP, many additional ortholog alignments can be generated from multi-copy gene families. For phylogenetic inference, users can choose a supermatrix approach and/or gene tree inference followed by supertree reconstruction. Users can specify a range of alignment filtering settings to retain high-quality alignments for phylogenetic inference. The workflow produces a detailed report that, in addition to the phylogenetic results, includes a range of diagnostics to verify the quality of the results.</span></p><p>Address of the bookmark: <a href="https://github.com/rbturnbull/orthoflow" rel="nofollow">https://github.com/rbturnbull/orthoflow</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4004/33rd-annual-convention-of-indian-association-for-cancer-research-from-13th-to-15th-february-2014</guid>
  <pubDate>Tue, 27 Aug 2013 10:37:08 -0500</pubDate>
  <link></link>
  <title><![CDATA[33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014]]></title>
  <description><![CDATA[
<p>RGCB is organizing the 33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014 with the theme "Discovery, Innovation and Translation in Cancer Research"</p>

<p>Kindly log on to conference website http://rgcb.res.in/IACR2014 for further details and timely updates and registration. We shall truly appreciate if the same be circulated among your friends, scholars and students encouraging them to participate in the meet.</p>

<p>http://210.212.237.38/iacrconference/</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27479/biogps</guid>
	<pubDate>Mon, 23 May 2016 03:15:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27479/biogps</link>
	<title><![CDATA[BioGPS]]></title>
	<description><![CDATA[<p>A free&nbsp;<em>extensible</em>&nbsp;and&nbsp;<em>customizable</em>&nbsp;<strong>gene annotation portal</strong>, a complete resource for learning about&nbsp;<strong>gene and protein function</strong>.</p>
<p>http://biogps.org/#goto=welcome</p><p>Address of the bookmark: <a href="http://biogps.org/#goto=welcome" rel="nofollow">http://biogps.org/#goto=welcome</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29284/genebreak-a-tool-to-systematically-identify-genes-recurrently-affected-by-the-genomic-location-of-chromosomal-cna-associated-breaks-by-a-genome-wide-approach</guid>
	<pubDate>Sat, 01 Oct 2016 15:15:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29284/genebreak-a-tool-to-systematically-identify-genes-recurrently-affected-by-the-genomic-location-of-chromosomal-cna-associated-breaks-by-a-genome-wide-approach</link>
	<title><![CDATA[GeneBreak: a tool to systematically identify genes recurrently affected by the genomic location of chromosomal CNA-associated breaks by a genome-wide approach]]></title>
	<description><![CDATA[<p>Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberrations. Currently, several computational methods are available and are widely applied to detect numerical copy number aberrations (CNAs) of chromosomal segments in tumor genomes. However, there is lack of computational methods that systematically detect structural chromosomal aberrations by virtue of the genomic location of CNA-associated chromosomal breaks and identify genes that appear non-randomly affected by chromosomal breakpoints across (large) series of tumor samples. ‘GeneBreak’ is developed to systematically identify genes recurrently affected by the genomic location of chromosomal CNA-associated breaks by a genome-wide approach, which can be applied to DNA copy number data obtained by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ collects the genomic locations of chromosomal CNA-associated breaks that were previously pinpointed by the segmentation algorithm that was applied to obtain CNA profiles. Next, a tailored annotation approach for breakpoint-to-gene mapping is implemented. Finally, dedicated cohort-based statistics is incorporated with correction for covariates that influence the probability to be a breakpoint gene. In addition, multiple testing correction is integrated to reveal recurrent breakpoint events. This easy-to-use algorithm, ‘GeneBreak’, is implemented in R (www.cran.r-project.org) and is available from Bioconductor (www.bioconductor.org/packages/release/bioc/html/GeneBreak.html).</p>
<p> </p><p>Address of the bookmark: <a href="http://www.bioconductor.org/packages/release/bioc/html/GeneBreak.html" rel="nofollow">http://www.bioconductor.org/packages/release/bioc/html/GeneBreak.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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