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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/42141?offset=30</link>
	<atom:link href="https://bioinformaticsonline.com/related/42141?offset=30" rel="self" type="application/rss+xml" />
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/32227/postdoctoral-research-position-in-bioinformatics-in-milan</guid>
  <pubDate>Thu, 20 Apr 2017 12:53:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Research Position in Bioinformatics in Milan]]></title>
  <description><![CDATA[
<p>The lab of Immunobiology of Neurological Disorders has a main interest in the biological processes associated with multiple sclerosis, an inflammatory disorder of the central nervous system. The projects of interest for this application involve research on translational bioinformatics in complex human neurological disorders.</p>

<p>You have a  PhD in Computational Science, Bioinformatics,  or equivalent, and expertise in analysis and modeling of human RNA-seq data, statistics, data mining and machine learning. Excellent communication skills in English (written and oral) is a must. Flexibility and willingness to work across multiple projects and technologies in a rapidly evolving scientific context is required.<br />Salary will depend on qualification and experience. Starting date: immediate.</p>

<p>Interested candidates should send to farina.cinthia@hsr.it:</p>

<p>1. CV (please show evidences of relevant titles, projects, courses, references, etc.)           <br />2. One page with a list of research topics (i.e. ongoing projects)     <br />3. earliest availability</p>

<p>4. 2-3 contact names</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/39260/biotechnology-eligibility-test-bet-question-paper</guid>
	<pubDate>Wed, 17 Apr 2019 04:56:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/39260/biotechnology-eligibility-test-bet-question-paper</link>
	<title><![CDATA[Biotechnology Eligibility Test (BET) Question Paper !]]></title>
	<description><![CDATA[<p><span>DBT-BET JRF 2019 Exam was held successfully on 14th April 2019. Official Question Paper &amp; Answer key of&nbsp;DBT-BET 2019 Exam has been released. </span></p><p><span>The best part about the DBT-BET Exam is both the question paper &amp; answer key is released immediately after the exam so you get the upper hand here to check how well you did in the DBT-BET exam, how much you are going to score and if you can pass the Exam with good score. This helps you in planning your career ahead. </span></p><p><span>DBT Exam is held once in a year by Department of Biotechnology &ndash; Govt of India.&nbsp;Candidates willing to get DBT-Junior Research Fellowship &ndash; DBT JRF fellowship should take up the&nbsp; DBT-BET Exam, DBT &ndash; Biotechnology Eligibility Test (BET) 2020 to be held on somewhere in the month of April. Official Notification for DBT-BET 2020 will be released in Feb 2020.</span></p><p><span>Answer at&nbsp;<a href="https://bioinformaticsonline.com/file/view/39262/biotechnology-eligibility-test-bet-answer-set">https://bioinformaticsonline.com/file/view/39262/biotechnology-eligibility-test-bet-answer-set</a></span></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/39260" length="524574" type="application/pdf" />
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/841/research-fellow</guid>
  <pubDate>Sat, 13 Jul 2013 11:23:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF CALCUTTA</p>

<p>A walk-in-interview will be held on 15.7.2013 at 12 noon in the Department of Biophysics, Molecular Biology and Bioinformatics, 92 A.P.C Road, Kolkata-700 009 to select one trainee research fellow and two students under DIC. The positions are purely temporary and would be for a period of six months from the date of joining which may be extended by another six months subject to successful performance.</p>

<p>Qualification:</p>

<p>For the Trainee Research Fellow: Should have a master degree in Bioinformatics or allied subjects and should have biological database development experience. Must have at least one publication.</p>

<p>For the Students: Should have a master degree in Bioinformatics or allied subjects and should be proficient in C-programming language. Must be familiar with techniques of Developmental Biology.</p>

<p>The Trainee Research Fellow would be paid a consolidated sum of Rs 10000/- per month and the students would be paid a sum amount Rs. 7000/- per month during the tenure of the project.</p>

<p>Advertisement:<br />www.caluniv.ac.in/News%20&amp;%20Announcement/trainee_rf_DIC.pdf</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</guid>
	<pubDate>Wed, 10 May 2017 04:51:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</link>
	<title><![CDATA[Ten International Scholarships for Indian Biotechnology and Bioinformatics Students]]></title>
	<description><![CDATA[<p>Wherever you go around the world, Indian students are in demand. With countries such as Canada and Australia providing huge incentives to Indian students to lure them to their shores, there are many institutions around the world that offer scholarships exclusively to Indian students. Historically these scholarships tend to be aimed towards Masters and PhD programmes however on the rise are scholarships for undergraduate students. Student World Online takes a look at ten international scholarships for Indian undergraduate students abroad.</p><p><br /><span><strong>1.&nbsp;</strong></span><strong><a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship"><span>TATA SCHOLARSHIP</span></a></strong>&nbsp;- Cornell University, New York State, USA<br />Tata, the Indian multinational conglomerate company, have a foundation known as the Tata Education &amp; Development Trust which has&nbsp;<span style="text-decoration: underline;"><a href="http://www.news.cornell.edu/stories/2008/10/tata-trust-gives-50-million-endowment-cornell" target="_blank">endowed a multi million dollar sum to Cornell University</a></span>&nbsp;to provide undergraduate scholarships to 20 Indian students every year. &nbsp;In another example of supporting American universities, the Tata group also pledged US$50 million to Harvard University in recent years, whose executive management programme&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Ratan_Tata" target="_blank">Ratan Tata</a></span>&nbsp;attended in the 1970s. &nbsp;<a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship" target="_blank"><span><span style="text-decoration: underline;">Read more...&nbsp;</span></span></a>&nbsp;<br /><br /><strong><span>2.</span></strong>&nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><strong><span>BRADMAN FOUNDATION SCHOLARSHIP</span></strong></a>&nbsp;- University of Wollongong, Australia.<br />Named after Australia's cricket legend&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Donald_Bradman" target="_blank">Donald Bradman</a></span>, the&nbsp;<span style="text-decoration: underline;"><a href="https://www.uow.edu.au/content/groups/public/@web/@unia/documents/doc/uow145334.pdf" target="_blank">UOW Bradman Foundation Scholarship</a></span>&nbsp;was launched in 2012, with the help of Adam Gilchrist no less, to offer one successful Indian student each year a 50% reduction in tuition fees. &nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a>&nbsp;&nbsp;</p><p><span><strong>3.&nbsp;</strong></span><strong><a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span>HUAWEI MAITREE SCHOLARSHIPS</span></a></strong>&nbsp;- Various Universities, China<br />Along with Tata, Huawei are the other huge corporation to be featured. &nbsp;China's massive telecoms equipment vendor are involved in these scholarships offered to Indian students studying in China. &nbsp;In 2013 there are 10 generous scholarships available which provide full tuition fees and living expenses. &nbsp;The courses on which the scholarships are offered include Science and Technology courses, Social Sciences and Culture and Development courses. &nbsp;<a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>4.&nbsp;</strong></span><strong><a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span>DR. MANMOHAN SINGH SCHOLARSHIPS</span></a></strong>&nbsp;- Cambridge University, England, UK<br />These scholarships have been designed to help budding Indian minds follow in the footsteps of&nbsp;<span style="text-decoration: underline;"><a href="http://pmindia.nic.in/" target="_blank">Indian prime minister Manmohan Singh</a></span>&nbsp;by studying at the prestigious Cambridge University. &nbsp;The scholarships can be applied to any undergarduate course (with the two exceptions of medicine and veterinary science) and cover everything, i.e. tuition and college fees, living expenses and an additional grant to go towards travel expenses. &nbsp;<a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>5.&nbsp;</strong></span><strong><a href="http://www.oxbridgeindia.com/scholarship.php"><span>OXFORD AND CAMBRIDGE SOCIETY OF INDIA</span></a></strong>&nbsp;- Oxford &amp; Cambridge Universities, England, UK<br />As the name might suggest, these are scholarships available for students wishing to study at Oxford or Cambridge (cleverly known together as&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Oxbridge" target="_blank">Oxbridge</a></span>). &nbsp;It is only available for applicants who are completing or have completed a degree at an Indian university, however these scholarships are for both undergraduate and graduate students.&nbsp;&nbsp;<a href="http://www.oxbridgeindia.com/scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>6.&nbsp;</strong></span><strong><a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span>EDINBURGH NAPIER UNIVERSITY</span></a></strong>&nbsp;- Scotland, UK<br />This one applies to all countries in the Indian subcontinent and is for both undergraduate and graduate courses. Edinburgh Napier University offers a merit based discount of &pound;2,000 Pounds. &nbsp;<a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>7.&nbsp;</strong></span><strong><a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span>SHEFFIELD UNIVERSITY</span></a></strong>&nbsp;- Sheffield, UK<br />Provides merit-based scholarships for undergraduate and graduate programmes across all subjects<span>.</span>&nbsp;<a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>8.&nbsp;</strong></span><strong><a href="http://www.india4eu.eu/scholarships" target="_blank"><span>INDIA 4EU II</span></a></strong>&nbsp;- Several Universities across Europe<br />Pioneered by the European Union and involving partner universities in France, Finland, Germany, Italy, Portugal, Spain and Sweden,&nbsp;<span style="text-decoration: underline;"><a href="http://www.india4eu.eu/" target="_blank">the India 4EU II initiative</a></span>&nbsp;is aimed at encouraging Indian students to study, work and live in Europe. &nbsp;The initiative is well funded and allows the successful students tuition fees, expenses for living and travel costs as well as insurance during their time at one of the partner universities. &nbsp;<a href="http://www.india4eu.eu/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>9.&nbsp;</strong></span><strong><a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span>TRINITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Valid for undergraduate courses in the faculties of Arts, Humanities, Social Sciences, Science, Computer Science or Engineering, the Trinity College Dublin offers Indian students scholarships to the tune of&nbsp;&euro;9,000 per annum over a year degree course. &nbsp;<a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>10.&nbsp;</strong></span><strong><a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/" target="_blank"><span>UNIVERSITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Another of Ireland and Dublin's finest, the UCD awards one Global Excellence Undergraduate Scholarship which provides the worthy student a substantial 50% towards their tuition fees and is valid for all courses save medicine, radiography and veterinary medicine. &nbsp;UCD also offers a Global Undergraduate Scholarship scheme for undergrads accepted on science, social sciences, arts and business courses. &nbsp;This is all thanks to a &euro;250,000 fund that will allow for 57 Indian students to benefit from scholarships at UCD. &nbsp;<a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/"><span><span style="text-decoration: underline;">Read more...</span></span></a></p>]]></description>
	<dc:creator>Priya Singh</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/view/2023</guid>
	<pubDate>Mon, 12 Aug 2013 09:36:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/view/2023</link>
	<title><![CDATA[What is the objective of BINC examination?]]></title>
	<description><![CDATA[<p>I personally did not understand the objective behind BINC examination. Is government only try to show off that they are doing something to promote Indian bioinformatics sector?</p><p>Moreover, It looks like BINC indirectly putting&nbsp;an extra burden to bioinformatician, mentally and financially.</p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-2018</guid>
	<pubDate>Mon, 23 Apr 2018 03:34:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-2018</link>
	<title><![CDATA[BINC (Bioinformatics National Certification) Examination 2018]]></title>
	<description><![CDATA[<p>Bioinformatics National Certification (BINC) was instituted by Department of Biotechnology, Government of India in 2005 at Savitribai Phule Pune University, formerly University of Pune, Pune to certify bioinformatics professionals and recognizing candidate's theoretical and practical ability and fostering interdisciplinary research. Later on, it was transferred to Jawaharlal Nehru University, New Delhi and then to Pondicherry University, Puducherry. Pondicherry University conducted the BINC examination in 2015, 2016 and 2017.</p><div><p>Biotech Consortium India Limited (BCIL), New Delhi is conducting the BINC 2018 examination on behalf Department of Biotechnology, Government of India.</p></div><div><p>BINC is a certification programme for graduate and post-graduate students for recognizing their exceptional bioinformatics knowledge and skills and to improve their employment opportunities. There is a growing need for trained manpower in the area of Bioinformatics. Currently, various universities and institutions, both government and private, impart Bioinformatics education in India. The qualifying candidates will be awarded a lifetime certificate. This certification would facilitate industries and potential employers in recruitment of Bioinformatics professionals having exceptionally good bioinformatics skills.</p></div><div><p>The certification under Bioinformatics National Certification (BINC) scheme is given to the candidates after three tier selection process. The successful candidates are also eligible for availing Junior Research Fellowship (JRF) for pursuing Ph.D. in Bioinformatics at recognized Indian universities/institutes. The research fellowships of all BINC qualified Indian nationals are funded by DBT. BINC qualified candidates are called DBT certified Bioinformaticians while the individuals availing the fellowships are called as DBT-BINC Junior Research Fellows (DBT-BINC-JRF). Cash prize of 10,000/- each is awarded to the top 10 BINC qualifiers.</p></div><div><p><strong>Eligibility</strong></p></div><div><p>i) Bachelor's/Master's degree in Life Sciences, Physical Sciences, Chemical Sciences, Mathematical Sciences, Agriculture, Veterinary, Medicine, Pharmacy, Engineering and Technology.&nbsp;</p></div><div><p>ii) No formal training, diploma or certificate in bioinformatics is required.</p></div><div><p>iii) Candidates in final year of Bachelor's/ Master's degree are also eligible to apply.</p></div><div><p><strong><a href="http://bcil.nic.in/PatternofExamination.html" target="_blank">Pattern of Examination&nbsp;</a></strong></p></div><div><p><strong>Syllabus</strong>&nbsp;</p></div><div><p>The syllabus consists of six sections - Bioinformatics, Biology, Physical Science, Chemical Science, Mathematics &amp; Statistics, and Information Technology.</p></div><div><ul>
<li><a href="http://bcil.nic.in/files/BINC/BINC_SYLLABUS_for_Paper_I_2018.pdf" target="_blank">Syllabus for Paper-I (Objective)</a></li>
<li><a href="http://bcil.nic.in/files/BINC/BINC_SYLLABUS_for_Paper_II_2018.pdf" target="_blank">Syllabus for Paper-II (Short answers)</a></li>
<li><a href="http://bcil.nic.in/files/BINC/BINC_SYLLABUS_for_Paper_III_2018.pdf" target="_blank">Syllabus for Paper-III (Practical)</a></li>
</ul></div><div><p><strong>Note: Paper-III will be computer based practical and will include programming on Bioinformatics</strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/Important_Dates.pdf" target="_blank">Important Dates</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/Examination_Centers.pdf" target="_blank">Examination Centers&nbsp;</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/BINC_Fellowship.pdf" target="_blank">BINC Fellowship&nbsp;</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/formanddownload.html" target="_blank">Forms &amp; Downloads&nbsp;</a></strong></p></div><div><p><strong><a href="http://bcil.nic.in/files/BINC/FAQs.pdf" target="_blank">FAQs&nbsp;</a></strong>&nbsp;</p></div><div><h3>Contact Us</h3></div><div><ul>
<li>Nisha Singh</li>
<li>Biotech Consortium India Limited</li>
<li>(CIN: U73100DL1990PLC041486)</li>
<li>5th Floor, Anuvrat Bhawan 210, Deen Dayal Upadhyaya Marg New Delhi - 110 002</li>
<li>Tel.: 011-2321 9064-67 Ext. 231, 236</li>
<li>Email - For general BINC queries:<a href="mailto:binc.dbt@biotech.co.in" target="_blank">binc.dbt@biotech.co.in</a></li>
<li>Helpline for Application submission related queries:<a href="mailto:binc.binchelpdesk@biotech.co.in" target="_blank">binchelpdesk@biotech.co.in</a></li>
<li>Website:&nbsp;<a href="http://bcil.nic.in/BINC.html" target="_blank">www.bcil.nic.in/BINC.html</a></li>
</ul></div>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/38257/bioinformatics-programme-officer-international-centre-for-genetic-icgeb-engineering-and-biotechnology</guid>
  <pubDate>Fri, 23 Nov 2018 03:50:16 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Programme Officer @ International Centre for Genetic ICGEB Engineering and Biotechnology]]></title>
  <description><![CDATA[
<p>The following vacancies are available in the DBT Apex Biotechnology Information project at ICGEB, New Delhi, India. These positions are available for a period of approx. two years, however, initial appointment offer will be for 6 months, which will be extended based on performance of work. Salaries will be offered as per DBT, educational qualification and experience. Depending on requirements, selected candidates may be required to work on location from the Department of Biotechnology, New Delhi. Shortlisted candidates will be invited for an interview at ICGEB. Only the selected candidates will be informed individually. No TA/DA or accommodation will be offered to the candidates attending the interview. </p>

<p>4 Programme Officer 1 <br />5 Technical Research Assistant 1 </p>

<p>Minimum Educational Qualification, desirable experience and expected duties: </p>

<p>4: The applicants should be Postgraduates with experience in Data collection and Statistics, especially in Biotechnology-related data. </p>

<p>Expected duties: Collection of Biotechnology related information from India, to facilitate the Apex BTIC experts committee review of programmes at centres and R&amp;D programs funded by DBT. </p>

<p>5: The applicants should be Postgraduates in Science with experience in Bioinformatics-related projects. <br />Expected duties: The candidates will assist the senior staff of the centre in daily activities and help in the preparation of the Annual Training Calendar, seminar and training podcasts/videos, repository of training material and Apex BTIC Newsletter. </p>

<p>Interested candidates should submit their full, updated Curriculum Vitae with a detailed description of relevant experience, along with two references by December 14th, 2018, addressed to, The Chairperson, DBT- Apex BTIC, ICGEB, Aruna Asaf Ali Marg, New Delhi 110067, Email: abtic@icgeb.res.in, kindly write “Application for DBT Apex BTIC vacancy” in the subject of the email or envelope, if sending by post.</p>

<p>Advertisement: http://www.icgeb.org/tl_files/Vacancies/dbt-abtic-vac-annmntrevsk.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42165/bioinformatics-scientistresearch-software-engineer-at-university-of-dundee-dundee-united-kingdom</guid>
  <pubDate>Wed, 26 Aug 2020 10:31:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Scientist/Research Software Engineer at University of Dundee Dundee, United Kingdom]]></title>
  <description><![CDATA[
<p>We are recruiting for an exceptional individual to join us as a computational scientist, bioinformatician, or (research) software engineer with an interest in interactive data analysis platforms for biology and medicine within our Jalview (www.jalview.org) research software engineering team.</p>

<p>More at https://www.jobs.dundee.ac.uk/fe/tpl_uod01.asp?s=4A515F4E5A565B1A&amp;jobid=104342,2382988671&amp;key=147934117&amp;c=99413415238921&amp;pagestamp=sesxbbuyifokdsfygf</p>

<p>Last date: 30th August 2020</p>

<p>Informal enquiries about this position may be made to Prof. Geoff Barton (gjbarton@dundee.ac.uk) or Dr Jim Procter (jprocter@dundee.ac.uk). To find out more about Jalview research software engineering team please visit www.jalview.org and www.compbio.dundee.ac.uk</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4636/molecular-and-computational-biology-research-school</guid>
  <pubDate>Fri, 20 Sep 2013 09:01:18 -0500</pubDate>
  <link></link>
  <title><![CDATA[Molecular and Computational Biology Research School]]></title>
  <description><![CDATA[
<p>The ambition of the Molecular and Computational Biology Research School (MCB) is to create an attractive and stimulating training environment for PhD students in molecular and computational biology, both to better serve the needs for relevant training in the field, and to stimulate crossdiscipline developments in the research of the parties.</p>

<p>http://www.uib.no/rs/mcb</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44718/mycology-research-resources-for-bioinformaticians-unlocking-the-fungal-kingdom</guid>
	<pubDate>Fri, 13 Dec 2024 11:21:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44718/mycology-research-resources-for-bioinformaticians-unlocking-the-fungal-kingdom</link>
	<title><![CDATA[Mycology Research Resources for Bioinformaticians: Unlocking the Fungal Kingdom]]></title>
	<description><![CDATA[<p>Mycology, the study of fungi, is a field that bridges ecology, medicine, and biotechnology. With advancements in bioinformatics, researchers now have unprecedented opportunities to explore the fungal kingdom at molecular, genetic, and ecological levels. From understanding pathogenic fungi to harnessing fungal enzymes for industrial applications, the potential is vast.</p><p>To fully leverage these opportunities, bioinformaticians require specialized tools and databases. This blog highlights essential resources for mycology research, focusing on databases, tools, and platforms tailored for fungal biology.</p><h4><strong>1. Fungal Databases</strong></h4><h5><strong>1.1. MycoCosm</strong></h5><p><strong>Website</strong>: <a target="_new">MycoCosm</a><br />Developed by the DOE Joint Genome Institute, MycoCosm is a comprehensive portal for fungal genomics. It offers genomic and transcriptomic data for a wide range of fungi, including saprobes, pathogens, and symbionts.</p><ul>
<li><strong>Key Features</strong>: Genome browsers, comparative genomics tools, and functional annotations.</li>
<li><strong>Best For</strong>: Large-scale studies on fungal evolution and ecology.</li>
</ul><h5><strong>1.2. FungiDB</strong></h5><p><strong>Website</strong>: <a href="https://fungidb.org/" target="_new">FungiDB</a><br />FungiDB is an integrated genomic resource for fungal pathogens and non-pathogens. It provides access to genome sequences, transcriptomic data, and functional annotations.</p><ul>
<li><strong>Key Features</strong>: Advanced search options, BLAST, and pathway analysis tools.</li>
<li><strong>Best For</strong>: Studying fungal pathogenesis and host-pathogen interactions.</li>
</ul><h5><strong>1.3. Index Fungorum</strong></h5><p><strong>Website</strong>: <a href="http://www.indexfungorum.org/" target="_new">Index Fungorum</a><br />This nomenclatural database provides information on the scientific names of fungi. It&rsquo;s an essential resource for taxonomists and researchers focused on fungal biodiversity.</p><ul>
<li><strong>Key Features</strong>: Taxonomic hierarchy and synonymy tracking.</li>
<li><strong>Best For</strong>: Identifying and classifying fungal species.</li>
</ul><h5><strong>1.4. UNITE</strong></h5><p><strong>Website</strong>: <a target="_new">UNITE</a><br />UNITE is a specialized database for fungal ITS (Internal Transcribed Spacer) sequences, often used in fungal identification and phylogenetics.</p><ul>
<li><strong>Key Features</strong>: Curated reference datasets and community annotations.</li>
<li><strong>Best For</strong>: Environmental mycology and microbial ecology studies.</li>
</ul><h4><strong>2. Analytical Tools</strong></h4><h5><strong>2.1. Funannotate</strong></h5><p><strong>Repository</strong>: <a href="https://github.com/nextgenusfs/funannotate" target="_new">GitHub - Funannotate</a><br />Funannotate is a genome annotation tool designed for fungi. It supports tasks like gene prediction, functional annotation, and orthology analysis.</p><ul>
<li><strong>Best For</strong>: Annotating newly sequenced fungal genomes.</li>
</ul><h5><strong>2.2. BUSCO (Benchmarking Universal Single-Copy Orthologs)</strong></h5><p><strong>Website</strong>: <a target="_new">BUSCO</a><br />BUSCO evaluates genome assembly and annotation completeness using orthologs. It includes a fungal-specific dataset.</p><ul>
<li><strong>Best For</strong>: Assessing the quality of fungal genome assemblies.</li>
</ul><h5><strong>2.3. Pathogen-Host Interactions Database (PHI-base)</strong></h5><p><strong>Website</strong>: <a href="http://www.phi-base.org/" target="_new">PHI-base</a><br />PHI-base is a manually curated resource containing information on pathogen-host interactions, including fungal pathogens.</p><ul>
<li><strong>Best For</strong>: Exploring virulence factors and host-pathogen relationships.</li>
</ul><h4><strong>3. Visualization Platforms</strong></h4><h5><strong>3.1. Cytoscape</strong></h5><p><strong>Website</strong>: <a href="https://cytoscape.org/" target="_new">Cytoscape</a><br />A powerful tool for visualizing molecular interaction networks, Cytoscape can be used to study protein-protein interactions, gene networks, and metabolic pathways in fungi.</p><ul>
<li><strong>Best For</strong>: Network biology and functional genomics.</li>
</ul><h5><strong>3.2. iTOL (Interactive Tree of Life)</strong></h5><p><strong>Website</strong>: <a target="_new">iTOL</a><br />iTOL is an interactive tool for visualizing phylogenetic trees.</p><ul>
<li><strong>Best For</strong>: Displaying fungal phylogenies and comparing evolutionary relationships.</li>
</ul><h4><strong>4. Community Resources</strong></h4><h5><strong>4.1. Mycological Society of America (MSA)</strong></h5><p><strong>Website</strong>: <a href="https://msafungi.org/" target="_new">MSA</a><br />The MSA promotes fungal research and provides access to resources, conferences, and publications.</p><ul>
<li><strong>Best For</strong>: Networking with fungal researchers and accessing recent studies.</li>
</ul><h5><strong>4.2. OpenFungi</strong></h5><p><strong>Website</strong>: <a href="https://openfungi.org/" target="_new">OpenFungi</a><br />OpenFungi is an open-source initiative providing fungal genomic and transcriptomic datasets for research and education.</p><ul>
<li><strong>Best For</strong>: Sharing and accessing public fungal datasets.</li>
</ul><h4><strong>5. Genomics Workflows</strong></h4><h5><strong>5.1. Galaxy</strong></h5><p><strong>Website</strong>: <a href="https://usegalaxy.org/" target="_new">Galaxy Project</a><br />Galaxy offers a web-based platform for reproducible bioinformatics workflows, including tools for fungal genome and transcriptome analysis.</p><ul>
<li><strong>Best For</strong>: User-friendly analysis pipelines without requiring coding skills.</li>
</ul><h5><strong>5.2. Snakemake</strong></h5><p><strong>Repository</strong>: <a target="_new">Snakemake</a><br />A flexible pipeline management tool that supports fungal data processing and analysis.</p><ul>
<li><strong>Best For</strong>: Custom workflows for large-scale fungal datasets.</li>
</ul><h4><strong>Conclusion</strong></h4><p>Fungal research is a rapidly growing field with vast implications for medicine, agriculture, and industry. For bioinformaticians, the availability of specialized resources&mdash;databases, tools, and community platforms&mdash;opens doors to innovative discoveries. Whether you are investigating fungal genomics, studying host-pathogen interactions, or exploring fungal biodiversity, the resources outlined above will empower your research journey.</p><p>Dive into these resources and help unravel the mysteries of the fungal kingdom!</p>]]></description>
	<dc:creator>Neel</dc:creator>
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