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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/42572?offset=10</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38316/simba-a-genome-assembly-project-management-system</guid>
	<pubDate>Thu, 29 Nov 2018 08:52:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38316/simba-a-genome-assembly-project-management-system</link>
	<title><![CDATA[SIMBA: a Genome Assembly Project Management System]]></title>
	<description><![CDATA[<p><span>SIMBA</span><span>, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely downloaded, shared and modified.</span></p><p>Address of the bookmark: <a href="http://ufmg-simba.sourceforge.net/" rel="nofollow">http://ufmg-simba.sourceforge.net/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44635/1000-genomes-chile-project</guid>
	<pubDate>Thu, 08 Aug 2024 01:24:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44635/1000-genomes-chile-project</link>
	<title><![CDATA[1000 Genomes Chile Project]]></title>
	<description><![CDATA[<p>Welcome to Chile Sequence to Chile: A Genomic Exploration Project for the Future Genomics, the science that deciphers the complexity of DNA, immerses us in the world of life at its most basic level. On this journey into the depths of genetic information, we find the 1000 Genomes Chile Project, an initiative that seeks to explore and understand the genetic wealth of our country.</p>
<p>Deciphering Life at the Molecular Level DNA sequencing is the key that opens the door to invaluable knowledge. By understanding the genes that make up Chilean species, we unravel the secrets of their evolution, their resistance and their adaptation to the environment. In a world where biodiversity faces constant threats, sequencing becomes crucial for the conservation and understanding of our natural heritage.</p>
<p>Involving Everyone: A Nationwide Effort The 1000 Genomes Chile Project is not just a task for scientists. It is a country-wide effort that seeks the participation of everyone: from citizens to the government to the private sector. We believe in the importance of sharing knowledge, involving society in the selection of species to sequence, in monitoring progress and in applying the results to preserve our environment.</p><p>Address of the bookmark: <a href="https://1000genomas.cl/" rel="nofollow">https://1000genomas.cl/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/23160/opencpu</guid>
	<pubDate>Sun, 05 Jul 2015 18:34:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/23160/opencpu</link>
	<title><![CDATA[OpenCPU]]></title>
	<description><![CDATA[<p>OpenCPU is a system for embedded scientific computing and reproducible research. The OpenCPU server provides a reliable and interoperable <a href="https://www.opencpu.org/api.html">HTTP API</a> for data analysis based on R.</p><p>The OpenCPU <a href="https://www.opencpu.org/jslib.html">JavaScript client library</a> provides the most seamless integration of R and JavaScript available today.</p><p>OpenCPU uses standard R packaging to develop, ship and deploy web applications. Several open source <a href="https://www.opencpu.org/apps.html">example apps</a> are available from Github.</p><p>Installing your own OpenCPU server is <a href="https://www.opencpu.org/download.html">super easy</a> and only takes a few minutes.</p><p>More at https://www.opencpu.org/</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/10966/genxpro-gmbh</guid>
	<pubDate>Thu, 22 May 2014 07:18:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/10966/genxpro-gmbh</link>
	<title><![CDATA[GenXPro GmbH]]></title>
	<description><![CDATA[<p><strong>GenXPro</strong>&nbsp;GMbH is service provider for entire spectrum of nucleotide-based information&nbsp;of any biological sample. By combining intelligent data reduction techniques and&nbsp;latest next generation sequencing technologies, our service portfolio provides most accurate and cost efficient solutions for&nbsp;transcriptomic-, genomic- or epigenomic research.</p><p><span><span><strong><span>GENXPRO GMBH</span>,&nbsp;</strong></span></span><span>ALTENH&Ouml;FERALLEE 3,&nbsp;</span><span>60438 FRANKFURT MAIN,&nbsp;</span><span>GERMANY</span></p><p><span><span><strong>Website</strong></span>:&nbsp;<a href="http://www.genxpro.info/products_and_services/"></a><a href="http://www.genxpro.info/products_and_services/">http://www.genxpro.info/products_and_services/</a></span></p><p><span><strong>PHONE</strong>: +49 (0)69- 95 73 97 10,&nbsp;FAX: +49 (0)69- 95 73 97 06</span></p><p><span>EMAIL: info@genxpro.de</span></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29410/entrez-direct-e-utilities-on-the-unix-command-line</guid>
	<pubDate>Wed, 19 Oct 2016 08:06:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29410/entrez-direct-e-utilities-on-the-unix-command-line</link>
	<title><![CDATA[Entrez Direct: E-utilities on the UNIX Command Line]]></title>
	<description><![CDATA[<p>Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.</p>
<p>EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez.</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/books/NBK179288/" rel="nofollow">https://www.ncbi.nlm.nih.gov/books/NBK179288/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/2518/genome-browsers</guid>
	<pubDate>Fri, 16 Aug 2013 19:04:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/2518/genome-browsers</link>
	<title><![CDATA[Genome Browsers]]></title>
	<description><![CDATA[<p>Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc.</p><p>Following are the weblink for different available browsers:</p><p><a href="http://www.ensembl.org/index.html">http://www.ensembl.org/index.html</a></p><p><a href="http://ensemblgenomes.org/">http://ensemblgenomes.org/</a></p><p><a href="http://genome.ucsc.edu/">http://genome.ucsc.edu/</a></p><p><a href="http://www.ncbi.nlm.nih.gov/genome">http://www.ncbi.nlm.nih.gov/genome</a></p><p><a href="http://www.ebi.ac.uk/genomes/">http://www.ebi.ac.uk/genomes/</a></p><p><a href="http://flybase.org/">http://flybase.org/</a></p><p><a href="http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi">http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi</a></p><p><a href="http://www.sanger.ac.uk/resources/databases/">http://www.sanger.ac.uk/resources/databases/</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/42137/plant-computational-genomics-lab-%E2%80%93-jill-wegrzyn</guid>
  <pubDate>Thu, 20 Aug 2020 19:49:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN]]></title>
  <description><![CDATA[
<p>Our research focuses on the computational analysis of genomic and transcriptomic sequences from non-model plant species. We do this by developing approaches to examine gene finding, gene expression, transcriptome assembly, and conserved element identification, through machine learning and computational statistics. We use these novel methods to address questions related to genome biology and population genomics.</p>

<p>We also develop web-based applications that integrate data across domains to facilitate the forest geneticist or ecologist’s ability to analyze, share, and visualize their data. Such integration requires the implementation of semantic technologies and ontologies to connect genotype, phenotype, and environmental data.</p>

<p>http://plantcompgenomics.com/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43062/jcvi-utility-libraries</guid>
	<pubDate>Sat, 08 May 2021 22:04:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43062/jcvi-utility-libraries</link>
	<title><![CDATA[JCVI utility libraries]]></title>
	<description><![CDATA[<p><span>Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.</span></p><p>Address of the bookmark: <a href="https://github.com/tanghaibao/jcvi" rel="nofollow">https://github.com/tanghaibao/jcvi</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22317/project-associate-bioinformatics-central-food-technological-research-institute-cftri</guid>
  <pubDate>Tue, 19 May 2015 07:01:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Associate Bioinformatics @ Central Food Technological Research Institute (CFTRI)]]></title>
  <description><![CDATA[
<p>Central Food Technological Research Institute (CFTRI)</p>

<p>Project Assistant (Level-II) job position in Central Food Technological Research Institute (CFTRI) on a temporary contractual basis in the research project (GAP 0469) funded by Science &amp; Engineering Research Board (SERB), Government of India, New Delhi tenable at the Lipidomics Centre, CSIR-CFTRI, Mysore, Karnataka</p>

<p>Name of the Position : </p>

<p>Qualification : First class M. Sc. in Biochemistry/Microbiology/Genetics/ Bioinformatics with good academic record and preferably with experience in molecular biology techniques and basic knowledge of molecular biology and biological chemistry</p>

<p>Emoluments : Rs. 12,000/- per month (Consolidated)</p>

<p>Age Limit : The upper age limit for applying shall be 28 years (as on 22-5-2015), which is relaxed for candidates belonging to Scheduled Castes/Schedule Tribes, Women, Persons with Disabilities (PWD) and OBCs as per GoI norms. <br /> <br />How to apply</p>

<p>Eligible candidates may send their complete Bio-data with e-mail address/contact phone number along with attested copies of the necessary certificates through post to Prof. Ram Rajasekharan, Lipidomics Centre, Department of Lipid Science, CSIR-CFTRI, Mysore-570 020, Karnataka (email: ram@cftri.res.in) on or before 22.05.2015</p>

<p>More at http://www.cftri.com/pa_gap0469.html</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42418/scientist-b-bioinformatics-at-aiims-delhi</guid>
  <pubDate>Sun, 20 Dec 2020 04:34:55 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist-B (Bioinformatics) at AIIMS, Delhi]]></title>
  <description><![CDATA[
<p>Name of the Project: “Artificial intelligence in Oncology, Harnessing big data and advanced computing to provide personalized diagnosis and treatment for Cancer patients”</p>

<p>Age Limit: 35</p>

<p>How to Apply for the AIIMS Life Science Job:</p>

<p>Interested applicants are asked to send out a detailed CV to Dr Ashok Sharma (aioncoaiims@gmail.com). Laboratory of Chromatin and also Cancer Epigenetics, Department of Biochemistry with the subject line “Application for Scientist-B position for MeitY project” latest by January 01st, 2021.<br />Complete Information of the year of passing, experience, marks, etc. ought to be mentioned in the CV Incomplete. applications will certainly be rejected Just shortlisted applicants will be called for interview. Chosen candidates will certainly be intimated by email/phone.<br />No TA/DA will certainly be paid for appearing in the interview.<br />Note, The institute reserved the right to fill up or not to fill up the post advertised.</p>

<p>Emoluments: Rs. 56,000/- plus 24 percent HRA</p>

<p>Eligibility:<br />2nd class Master’s Degree with a PhD in a pertinent subject (Bioinformatics) from.a recognized University<br />1st class Master’s degree in Life Sciences (Bioinformatics) from a recognized university OR.<br />Bachelor’s Degree in Engineering or-Technology with minimal 60% marks from a recognized University or equivalent.</p>

<p>Desirable Qualifications:<br />Experience in Bioinformatics/NGS data. Analysis/System Biology/Computer Science/ statistics with experience in Machine learning/Al project.<br />Experience of Deep learning applications in biological data ( image/text).<br />Proficient in Rf Python machine learning libraries.<br />Prior experience in the cancer-related project (ML-based) will be advantageous.<br />Experience with PyTorch/TensorFlow will certainly be very desirable.<br />Applicant should have strong scientific writing as well as. verbal abilities.<br />Papers in sci-indexed journals demonstrating ML skill sets.<br />Database handling will certainly be plus yet not required.</p>

<p>More detail at https://www.aiims.edu/images/pdf/recruitment/advertisement/biochem-16-12-20.pdf</p>
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