<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/42806?offset=320 https://bioinformaticsonline.com/bookmarks/view/44889/gfaffix-identifies-walk-preserving-shared-affixes-in-variation-graphs-and-collapses-them-into-a-non-redundant-graph-structure Thu, 28 Aug 2025 03:11:25 -0500 https://bioinformaticsonline.com/bookmarks/view/44889/gfaffix-identifies-walk-preserving-shared-affixes-in-variation-graphs-and-collapses-them-into-a-non-redundant-graph-structure <![CDATA[GFAffix : Identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.]]> GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

 

image

Address of the bookmark: https://github.com/codialab/GFAffix

]]> BioStar https://bioinformaticsonline.com/bookmarks/view/41485/chromosight-computer-vision-based-program-for-pattern-recognition-in-chromosome-hi-c-contact-maps Mon, 23 Mar 2020 06:20:04 -0500 https://bioinformaticsonline.com/bookmarks/view/41485/chromosight-computer-vision-based-program-for-pattern-recognition-in-chromosome-hi-c-contact-maps <![CDATA[chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps]]> Python package to detect chromatin loops (and other patterns) in Hi-C contact maps.

Stable version with pip:

pip3 install --user chromosight

Stable version with conda:

conda install -c bioconda -c conda-forge chromosight

or, if you want to get the latest development version:

pip3 install --user -e git+https://github.com/koszullab/chromosight.git@master#egg=chromosight

Address of the bookmark: https://github.com/koszullab/Chromosight

]]> Jit