<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/42809?offset=740 https://bioinformaticsonline.com/opportunity/view/10459/associate-professor-bio-informatics-at-university-of-allahabad-in-allahabad Wed, 07 May 2014 00:26:53 -0500 <![CDATA[Associate Professor - Bio-Informatics at University of Allahabad in Allahabad]]> No of vacancies: 01

Pay scale: Pay Band of Rs. 37400-67000 with AGP of Rs. 9000.

i. Educational Qualification: Good academic record with a Ph.D. Degree in the concerned/allied/relevant disciplines.

ii. A Master's Degree with at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed).

iii. A minimum of eight years of experience of teaching and/or research in an academic/research position equivalent to that of Assistant Professor in a University, College or Accredited Research Institution/industry excluding the period of Ph.D. research with evidence of published work and a minimum of 5 publications as books and/or research/policy papers.

iv. Contribution to educational innovation, design of new curricula and courses, and technology - mediated teaching learning process with evidence of having guided doctoral candidates and research students.

v. A minimum score as stipulated in the Academic Performance Indicator (API) based Performance Based Appraisal System (PBAS), set out in UGC Regulation.

Download application form from website: http://www.allduniv.ac.in/

Send your application to the Registrar, University of Allahabad, Allahabad-211002 (U.P.) on or before 30th April 2014

For more details: http://www.allduniv.ac.in/images/adv/backlog/advt-details.pdf OR http://www.allduniv.ac.in/images/news/extension-notice.pdf

Last Apply Date: 30 May 2014

]]> https://bioinformaticsonline.com/bookmarks/view/36019/ewas-epigenome-wide-association-study-software-20 Wed, 21 Mar 2018 18:14:00 -0500 https://bioinformaticsonline.com/bookmarks/view/36019/ewas-epigenome-wide-association-study-software-20 <![CDATA[EWAS: epigenome-wide association study software 2.0]]> EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0 software was developed based on our “population epigenetic framework” and can perform: (1) epigenome-wide single marker association study; (2) epigenome-wide methylation haplotype (meplotype) association study; and (3) epigenome-wide association meta-analysis.

Address of the bookmark: http://www.bioapp.org/ewas/

]]> Jit https://bioinformaticsonline.com/videolist/watch/10664/dna-replication-process-3d-animation Sat, 10 May 2014 04:41:22 -0500 https://bioinformaticsonline.com/videolist/watch/10664/dna-replication-process-3d-animation <![CDATA[DNA Replication Process [3D Animation]]]> See an organised list of all the animations: http://doctorprodigious.wordpress.com/hd-animations/]]> https://bioinformaticsonline.com/pages/view/1130/bioinformatics-courses-around-the-world Fri, 19 Jul 2013 02:43:46 -0500 https://bioinformaticsonline.com/pages/view/1130/bioinformatics-courses-around-the-world <![CDATA[Bioinformatics Courses Around the World]]> Bioinformatics Courses around the world


Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are:

  1. To show the extent of growth of this new discipline
  2. To provide a resource for students, and academics and
  3. To access notes on the subject to allow some brief comparisons between courses.

The graduate courses outlined in the table mainly exist as a coursework component of an MSc or PhD degree. Of course, many institutions will also have pure research programs in Bioinformatics at the Hons, MSc, or PhD level and will not have a 'coursework component'. These research programs may not always reflect the main research program of the institution since the research depends upon the interests of a particular individual or small team within that institution. It is difficult to track these individual research programs. Consequently, we have not included all institutions with a bioinformatics research project. Bioinformatics is an interdisciplinary subject and this is reflected in the fact that the courses are offered by departments or schools as diverse as: computer science, biochemistry, molecular biology, microbiology, engineering, and mathematics. Similarly, bioinformatics may also be known by other names such as: computational biology, biocomputing, molecular informatics, computational molecular biology, biological information theory, molecular phylogenetics, and molecular bioinformatics.

Bioinformatics University Courses

US

Canada

Europe

UK

Sweden

Norway

Germany

Finland

France

Denmark

Belgium

Switzerland

Austria

Israel

New Zealand

Australia

Asia & South Pacific

Africa


Others:


Advanced Courses and Papers

 

If your university is not there in the list, please let me know info_at_bioinformaticsonline.com

]]> Jitendra Narayan https://bioinformaticsonline.com/opportunity/view/10748/bioinformatics-phd-at-cuk-kerala Sat, 10 May 2014 20:21:22 -0500 <![CDATA[Bioinformatics PhD at CUK Kerala]]> Applications are invited from highly motivated students (UGC-CSIR-JRF) with a background in Genomics/ Biotechnology/ Molecular Microbiology/ Biochemistry and Bioinformatics to pursue research leading to Ph.D. in the following areas;

1. Cancer Genomics

2. Microbial Genetics and Metagenomics

3. Human Infective Diseases

4. Computational Drug Design

Interested candidates may apply to Dr. Ranjith N. Kumavath, Assistant Professor & Head, Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Padannakad (PO), Nileshwar, Kasaragod-671328,Kerala. Email: RNkumavath@gmail.com

]]> https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide Thu, 28 May 2015 21:10:12 -0500 https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide <![CDATA[One page R survival guide !!]]> There any many of the documents have been developed and tested by scientist around the world. I found this one really useful. The data used is available for download as data.zip.

Reference@http://www.datasciencecentral.com/profiles/blogs/one-page-r-a-survival-guide-to-data-science-with-r

  • Templates for the Data Scientist
    1. A Template for Preparing Data: *OnePageR - *R
    2. A Template for Building Models: *OnePageR - *R
  • Getting Started as a Data Scientist
    1. Getting Started with R and Rattle: *Lecture - *Laboratory
    2. Introducing and Interacting with R: *Lecture - *Laboratory
    3. BasicR - OnePage(R) - Writing R scripts
  • Dealing With Data
    1. Read Data into R: *OnePageR - *R
    2. Explore and Summarise Data: *OnePageR - *R
    3. Transform Data: *OnePageR - *R
    4. Dealing with Dates and Time: (PDF, R) Dates and Time
    5. Visualising Data with GGPlot2: *OnePageR - *R
    6. Visualising Data with Maps *OnePageR - *R
    7. Spatial (R) Spatial Analysis
    8. Handling Big Data *OnePageR - *R
  • Descriptive Analytics
    1. Cluster Analysis: *Lecture - *OnePageR - *R
    2. Association Analysis: *Lecture
  • Predictive Analytics
    1. Decision Trees: *Lecture - *OnePageR - *R - *Rattle
    2. Ensembles of Decision Trees: *Lecture - *OnePageR - *R
    3. SVM (R)
    4. KernLab (R)
    5. NeuralNetworks (R)
    6. NNet (R)
  • Model Delivery
    1. Evaluating Models: *OnePageR - *R
    2. Evaluation (R)
    3. Scoring (R)
    4. PMML (R) Exporting Models for Deployment
  • Advanced Topics
    1. Text Mining: *OnePageR - *R
  • Advanced R Topics
    1. Plots (PDF, R) Miscellaneous Plots
    2. Functions (PDF, R) Writing Functions in R
    3. Parallel (PDF, R) Parallel Execution
    4. Packaging (R) Pulling it Together into a Package
    5. Doing R with Style: *OnePageR - *R
    6. Literate Data Mining with KnitR: *Lecture - *OnePageR - *
]]> Rahul Nayak https://bioinformaticsonline.com/bookmarks/view/10925/a-brief-bioinformatics-tutorial Wed, 21 May 2014 12:50:09 -0500 https://bioinformaticsonline.com/bookmarks/view/10925/a-brief-bioinformatics-tutorial <![CDATA[A Brief Bioinformatics Tutorial]]> This is about how to use a computer to find what is known about a gene of interest and also how to get new insights about it.

The tutorial is divided in three main parts:

  • In the Sequence part, you will see how to look efficiently for a particular protein sequence, how to blast it against the database of your choice to find homologues, how to perform a multiple alignment of the homologues you've selected and how to edit this alignment.
  • The Structure part is about molecular visualization, homology modeling and structural domain prediction.
  • In the Function part, you will be introduced to you 3 useful servers to investigate the function of a protein. i.e. finding interactors, co-expressed genes, see a phylogenetic profile, easily access papers citing your gene etc ...

During all the three parts, we will use the S. cerevisiae VPS36 protein as an example.

Address of the bookmark: http://www.mrc-lmb.cam.ac.uk/rlw/text/bioinfo_tuto/introduction.html

]]> Jit https://bioinformaticsonline.com/opportunity/view/11035/bioinformatics-jrfsrf-position-at-nii Sun, 25 May 2014 16:54:04 -0500 <![CDATA[Bioinformatics JRF/SRF position at NII]]> NATIONAL INSTITUTE OF IMMUNOLOGY, NEW DELHI-110067

Applications are invited for the position of Senior Research Fellow for the following time-bound sponsored project as per the details given below:

1. BTIS project on, “Bioinformatics Center-National Infrastructural Facility in the Area of Immunology” funded by DBT

Senior Research Fellow (P) (One Position only)

Dr. Debasisa Mohanty
Staff Scientist-VI
deb@nii.res.in

Qualifications: M.Sc in Biological Sciences or Biotechnology with at least 04 years of Research experience in Bioinformatics or computational Biology after the master’s degree is essential.

Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications & experience

Rs. 18,000/- per month consolidated plus 30% HRA if Leading to Ph.D/NET/GATE Qualified otherwise Rs. 14,000/- per month + 30% HRA.

Job description: The candidate should be well versed in programming in PERL/C++/HTML/CGI, web server and portal development, computational analysis of
protein structure & function, molecular dynamics simulations and use of high performance computing systems.

GENERAL TERMS AND CONDITIONS:-

1. The candidates selected for the above posts will be on contract for one year or duration of the project whichever is shorter, at a time.
2. No hostel/ housing facility will be provided.
3. Number of posts may vary and shall be need based. Advertisement is no commitment.
4. Applicants may clearly mention the category they belong to i.e. SC/ST/OBC/PH and attach documentary proof of the same.
5. No TA/DA will be paid for attending the interview, if called for.
6. Apart from sending application in the prescribed format given below, candidates should send complete Curriculum Vitae along with the names of three referees. Curriculum Vitae should contain details of the experimental expertise.

HOW TO APPLY Interested candidates may apply directly, STRICTLY IN THE PRESCRIBED FORMAT GIVEN BELOW, through e-mail, to the Investigator of the project, clearly indicating the name of the project along with their complete C.V., e-mail id, fax numbers, telephone numbers. Only Short listed candidates will be called for interview and they required to submit attested copies of all their certificates and a Demand Draft of Rs 100/- drawn on Canara Bank or Indian Bank payable at Delhi/New Delhi in favour of the Director, NII (SC / ST and PH candidates are exempted subject to submission of documentary proof), at the time of interview.

LAST DATE OF RECEIPT OF APPLICATIONS: 06th June, 2014

Advertisement

www1.nii.res.in/sites/default/files/projectappointment-Dr.Mohanty-6June2014.pdf

]]> https://bioinformaticsonline.com/opportunity/view/13014/bioinformatics-jrf-vacancy-at-icgeb-new-delhi Wed, 23 Jul 2014 16:07:15 -0500 <![CDATA[Bioinformatics JRF vacancy at ICGEB, New Delhi]]> Junior Research Fellow for a DBT sponsored project entitled "Computational and experimental characterization of stage specific arginine methylation in P. falciparum proteome".

Candidates should have a 1st class MSc/MTech/BTech degree in Bioinformatics. Please send complete CV, quoting Application for RMETH-JRF-2014, by email to Dr. Dinesh Gupta: dinesh@icgeb.res.in

Closing date for applications: 6 August 2014

More at http://www.icgeb.org/tl_files/Vacancies/JRF.pdf

]]> https://bioinformaticsonline.com/pages/view/11313/linux-sort-commands-for-bioinformatics Sat, 31 May 2014 15:41:16 -0500 https://bioinformaticsonline.com/pages/view/11313/linux-sort-commands-for-bioinformatics <![CDATA[Linux Sort Commands for Bioinformatics]]> Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space efficiency GNU sort stands at the top. It can sort a 20Gb file with less than 2Gb memory. It is not trivial to implement so powerful a sort by yourself.

sort a space-delimited file based on its first column, then the second if the first is the same, and so on:
sort input.txt

sort a huge file (GNU sort ONLY):
sort -S 1500M -t $HOME/tmp input.txt > sorted.txt

sort starting from the third column, skipping the first two columns:
sort +2 input.txt

sort the second column as numbers, descending order; if identical, sort the 3rd as strings, ascending order:
sort -k2,2nr -k3,3 input.txt

sort starting from the 4th character at column 2, as numbers:
sort -k2.4n input.txt

More Linxu sort command information

If you have any sort commands you'd like to share, please add them to our comments section below. For more help, you can also type:

man sort

or

sort --help

on your Unix/Linux system.

]]> Rahul Nayak