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netGO: R-Shiny package for network-integrated pathway enrichment analysis
By Jit 1746 days agogithub.com - netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species...Platypus – R package for object detection and image segmentation.
By BioStar 1476 days agogithub.com - platypus is an R package for object detection and semantic segmentation. Currently using platypus you can perform: multi-class semantic segmentation using U-Net architecture multi-class object detection...ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
By LEGE 345 days agoacademic.oup.com - ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing...Sequanix: a dynamic graphical interface for Snakemake workflows
By BioStar 1747 days agogithub.com - A Python library dedicated to NGS analysis (e.g., tools to visualise standard NGS formats). A set of pipelines dedicated to NGS in the form of Snakefiles (Makefile-like with Python syntax based on snakemake framework) with more than 80 re-usable...JUDI: Just Do It
By Jit 1175 days agogithub.com - judi comes from the idea of bringing the power and efficiency of doit to execute any kind of task under many combinations of parameter settings. https://github.com/ncbi/JUDIPacman
By Rahul Nayak 3568 days agoThe pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions.clusterProfiler
By Jit 3082 days agowww.bioconductor.org - statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author:...Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit,...
By Neel 1751 days agowww.phrap.org - Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence...SVbyEye: R Package to visualize alignments between two or multiple DNA sequences
By LEGE 68 days agogithub.com - R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format. SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2343 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomes
