<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/43548?offset=30 https://bioinformaticsonline.com/bookmarks/view/33791/slactree-svg-large-annotated-circular-tree-drawing Mon, 03 Jul 2017 08:02:56 -0500 https://bioinformaticsonline.com/bookmarks/view/33791/slactree-svg-large-annotated-circular-tree-drawing <![CDATA[slacTree: SVG Large Annotated Circular Tree drawing]]> A simple, extensible, Perl script for producing figures of large phylogenetic trees.

  • While there are many other tree drawing programs, slacTree was originally written in 2009 to fill a need for producing publication quality figures of circular trees with more than 1000 taxa with custom annotations
  • Because it is a single Perl script with very few dependencies, it is easy to run, and easy to further customize
  • SVG is used because it is a scalable format allowing for very small representations of entire trees or highly magnified regions with unlimited resolution
  • Circular and radial trees are more compact than linear representations

 

Address of the bookmark: https://github.com/mccrowjp/slacTree

]]> Jit https://bioinformaticsonline.com/bookmarks/view/40298/environment-for-tree-exploration-ete-is-a-python-programming-toolkit-that-assists-in-the-recontruction-manipulation-analysis-and-visualization-of-phylogenetic-trees Wed, 27 Nov 2019 05:32:33 -0600 https://bioinformaticsonline.com/bookmarks/view/40298/environment-for-tree-exploration-ete-is-a-python-programming-toolkit-that-assists-in-the-recontruction-manipulation-analysis-and-visualization-of-phylogenetic-trees <![CDATA[Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees]]> The Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees (although clustering trees or any other tree-like data structure are also supported).

Other tools

https://github.com/shenwei356/taxonkit

 

Address of the bookmark: https://pypi.org/project/ete3/3.1.1/

]]> Rahul Nayak https://bioinformaticsonline.com/bookmarks/view/38055/ancestral-genomes-a-resource-for-reconstructed-ancestral-genes-and-genomes-across-the-tree-of-life Fri, 02 Nov 2018 08:16:27 -0500 https://bioinformaticsonline.com/bookmarks/view/38055/ancestral-genomes-a-resource-for-reconstructed-ancestral-genes-and-genomes-across-the-tree-of-life <![CDATA[Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life]]>  Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehensive reconstructions of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been reconstructed for 78 genomes of now-extinct species that were the common ancestors of extant species from across the tree of life. 

Address of the bookmark: http://ancestralgenomes.org/

]]> Abhimanyu Singh https://bioinformaticsonline.com/bookmarks/view/44157/onezoom-tree-of-life-explorer Sat, 12 Nov 2022 09:29:08 -0600 https://bioinformaticsonline.com/bookmarks/view/44157/onezoom-tree-of-life-explorer <![CDATA[OneZoom tree of life explorer...]]> An interactive map of the evolutionary links between all living things known to science. Discover your favourites, see which species are under threat, and be amazed by the diversity of life on earth.

 

Address of the bookmark: https://www.onezoom.org/

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