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<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/43670?offset=930</link>
	<atom:link href="https://bioinformaticsonline.com/related/43670?offset=930" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42267/hapsolo-an-optimization-approach-for-removing-secondary-haplotigs-during-diploid-genome-assembly-and-scaffolding</guid>
	<pubDate>Mon, 26 Oct 2020 21:23:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42267/hapsolo-an-optimization-approach-for-removing-secondary-haplotigs-during-diploid-genome-assembly-and-scaffolding</link>
	<title><![CDATA[HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding.]]></title>
	<description><![CDATA[<p><span>Despite marked recent improvements in long-read sequencing technology, the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary and secondary contigs are not properly identified, the primary assembly will overrepresent both the size and complexity of the genome, which complicates downstream analysis such as scaffolding.</span></p>
<p><span>More at&nbsp;https://github.com/esolares/HapSolo</span></p><p>Address of the bookmark: <a href="https://github.com/esolares/HapSolo" rel="nofollow">https://github.com/esolares/HapSolo</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18576/graduate-research-assistantships-university-of-nebraska-lincoln-unl</guid>
  <pubDate>Wed, 22 Oct 2014 10:05:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Graduate research assistantships @ University of Nebraska-Lincoln (UNL)]]></title>
  <description><![CDATA[
<p>Graduate research assistantships in quantitative genetics are available with Gota Morota in the Department of Animal Science at the University of Nebraska-Lincoln (UNL).</p>

<p>Current projects in the Morota lab include developing kernel-based whole-genome prediction and kernel-based genome-wide association models, polygenic modeling of binary traits, reexamining the results from quantitative genetics analysis in light of functional annotation, and extending kernel methods (such as GBLUP and RKHS) specifically tailored for diverse types of emerging omics data.</p>

<p>In addition, candidates will be expected to leverage opportunities to interact with faculty in animal genetics and biometrics at the UNL in the areas of bioinformatics, breeding, functional genomics, quantitative genetics, and molecular genetics.</p>

<p>Candidates should have a B.S. or M.S. degree in quantitative disciplines with strong background and interest in statistical computing. <br />The starting date is Fall 2015. <br />For more information about research in the Morota lab at the UNL, visit: http://www.morotalab.org</p>

<p>A letter of interest in the position, C.V., and contact information for <br />three references should be emailed to Gota Morota at . <br />Review of applications will begin immediately, and continue until the <br />positions are filled. Informal inquiries are also welcome.</p>

<p>Also, please see: http://animalscience.unl.edu/anscprospectivegraduatestudents</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43055/infogenomer-integrative-reconstruction-of-cancer-genome-karyotypes</guid>
	<pubDate>Wed, 05 May 2021 01:02:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43055/infogenomer-integrative-reconstruction-of-cancer-genome-karyotypes</link>
	<title><![CDATA[InfoGenomeR: Integrative reconstruction of cancer genome karyotypes]]></title>
	<description><![CDATA[<p>InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the optimal breakpoint graph representing cancer genomes.</p>
<p><img src="https://github.com/YeonghunL/InfoGenomeR/raw/master/doc/overview.png" alt="image" style="border: 0px; border: 0px;"></p>
<p>More at&nbsp;https://www.nature.com/articles/s41467-021-22671-6</p><p>Address of the bookmark: <a href="https://github.com/dmcblab/InfoGenomeR" rel="nofollow">https://github.com/dmcblab/InfoGenomeR</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18820/jrfsrf-at-university-of-calcutta</guid>
  <pubDate>Fri, 31 Oct 2014 08:53:10 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF/SRF at University of Calcutta]]></title>
  <description><![CDATA[
<p>Applications are invited to appear at a walk-in-interview for one post of Junior Research Fellow in the DBT(DBT Twinning NER) sponsored project entitled “Protein folding kinetics is a selection force on shaping codon usage bias in the high expression genes” in the room of the HOD, Department of Biotechnology and the Coordinator, DR. B. C. Guha Centre for Genetic Engineering and Biotechnology, University College of Science, 35 Ballygunge Circular Road, Kolkata 700019 on the 12th November, 2014 at 3:00 p.m.</p>

<p>Essential qualifications: First class M. Sc. in any branch of life sciences and qualified CSIR-UGC NET/GATE Examination.</p>

<p>Desirable qualifications: Practical experience in biochemical and biophysical studies of proteins</p>

<p>Emoluments: as per DBT norms</p>

<p>The project is tenable for two years, initially for one year.</p>

<p>Age: Below 28 years (relaxable in the case of SC/ST/OBC/women candidates)</p>

<p>Candidates are requested to bring two sets of complete applications on plain paper furnishing bio-data and copies of attested certificates along with originals (for verification) on the date of interview.</p>

<p>No TA/DA is admissible for candidates appearing at the interview.</p>

<p>Dr. Rajat Banerjee<br />Assistant Professor<br />Department of Biotechnology and<br />Dr. B. C. Guha Centre for Genetic Engineering and Biotechnology<br />University College of Science<br />35, Ballygunge Circular Road<br />Kolkata 700019</p>

<p>Advertisement: www.caluniv.ac.in/news/jrf_biotech_2.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43273/understanding-kmer</guid>
	<pubDate>Wed, 18 Aug 2021 04:27:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43273/understanding-kmer</link>
	<title><![CDATA[Understanding kmer !]]></title>
	<description><![CDATA[<p><a href="https://en.wikipedia.org/wiki/k-mer">What is a&nbsp;<em>k-mer</em>&nbsp;anyway?</a><span>&nbsp;A&nbsp;</span><em>k-mer</em><span>&nbsp;is just a sequence of&nbsp;</span><em>k</em><span>&nbsp;characters in a string (or nucleotides in a DNA sequence). Now, it is important to remember that to get&nbsp;</span><em>all k-mers</em><span>&nbsp;from a sequence you need to get the first&nbsp;</span><em>k</em><span>&nbsp;characters, then move just a single character for the start of the next&nbsp;</span><em>k-mer</em><span>&nbsp;and so on. Effectively, this will create sequences that overlap in&nbsp;</span><code>k-1</code><span>&nbsp;positions.</span></p><p>Address of the bookmark: <a href="https://bioinfologics.github.io/post/2018/09/17/k-mer-counting-part-i-introduction/" rel="nofollow">https://bioinfologics.github.io/post/2018/09/17/k-mer-counting-part-i-introduction/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19086/postdoctoral-fellowship-in-bioinformatics</guid>
  <pubDate>Sat, 08 Nov 2014 14:41:14 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral fellowship in Bioinformatics]]></title>
  <description><![CDATA[
<p>A two-year post-doctoral position is available in the Biocomputing group of the Sapienza University led by Anna Tramontano to work on either genomics research or structural bioinformatics, focusing on the study of relevant biomedical problems.<br />The ideal candidate should be motivated and talented, hold a PhD degree, have good programming skills, a grasp of statistical methods and an understanding of biology.<br />Experience in the development of computational biology methods would be an added value.</p>

<p>Good communication skills and fluency in spoken and written English are required.<br />Please apply sending a curriculum vitae, the names of at least two referees and a letter of motivation describing past experience and future goals to anna.tramontano@uniroma1.it with subject: “Application for post-doctoral position November 2014 YOUR LAST NAME”</p>

<p>Deadline: No later than November 28th, 2014.<br />Duration: 2 years</p>

<p>Salary on grant: Commeasured to the experience of the candidate<br />Contact Person (Referent): Anna Tramontano<br />Ref. E-Mail: anna.tramontano@uniroma1.it<br />Group Web Page: http:/www.biocomputing.it</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43620/ncbi-datasets-cli-quickstart-command-line-tools</guid>
	<pubDate>Tue, 07 Dec 2021 02:51:26 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43620/ncbi-datasets-cli-quickstart-command-line-tools</link>
	<title><![CDATA[ncbi-datasets-cli -- Quickstart: command line tools !]]></title>
	<description><![CDATA[<p><span>Install and use the NCBI Datasets command line tools</span></p>
<p>The NCBI Datasets datasets command line tools are&nbsp;<a href="https://www.ncbi.nlm.nih.gov/datasets/docs/v1/reference-docs/command-line/datasets/">datasets</a>&nbsp;and&nbsp;<a href="https://www.ncbi.nlm.nih.gov/datasets/docs/v1/reference-docs/command-line/dataformat/">dataformat</a>&nbsp;.</p>
<p>Use&nbsp;<span>datasets</span>&nbsp;to download biological sequence data across all domains of life from NCBI.</p>
<p>Use&nbsp;<span>dataformat</span>&nbsp;to convert metadata from&nbsp;<a href="https://jsonlines.org/" target="_blank">JSON Lines</a>&nbsp;format to other formats.</p>
<p><strong>Conda download:</strong></p>
<p>https://anaconda.org/conda-forge/ncbi-datasets-cli</p>
<p><strong>Buld Download</strong></p>
<p>&nbsp;https://www.ncbi.nlm.nih.gov/datasets/builder/?tax_id=29979</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/datasets/docs/v1/quickstarts/command-line-tools/" rel="nofollow">https://www.ncbi.nlm.nih.gov/datasets/docs/v1/quickstarts/command-line-tools/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19137/centre-for-systems-biology-bioinformatics-panjab-university-vacancy-of-research-fellow</guid>
  <pubDate>Wed, 12 Nov 2014 06:18:54 -0600</pubDate>
  <link></link>
  <title><![CDATA[Centre for Systems Biology &amp; Bioinformatics, Panjab University vacancy of Research Fellow]]></title>
  <description><![CDATA[
<p>Applications are invited along with complete bio-data and attested copies of certificates of qualifications, experience etc. for the one post of <br />Research Fellow and one post of Program Assistant under PURSE Grant of the University in Centre for Systems Biology &amp; Bioinformatics, UIEAST, Panjab University, Chandigarh which is tenable till the period of the project</p>

<p>Essential Qualification<br />For Research Fellow:-<br />M.Sc. in Systems Biology and Bioinformatics / Life<br />Sciences with minimum 55% marks.<br />Preference will be given to NET/GATE/ICMR qualified candidates without fellowship however, candidates who have cleared the Panjab University Ph.D. entrance test in Systems Biology &amp; Bioinformatics will also be eligible. </p>

<p>Applications should be reach on or before 19-11-2014 in the office of the undersigned. Interview will be held on 21-11-2014 in the office of the Coordinator, Centre for Systems Biology &amp; Bioinformatics, South Campus, Block-3, Sector-25, Panjab University, Chandigarh. No TA/DA will be paid. </p>

<p>more at http://jobs.puchd.ac.in/includes/jobs/2014/20141110143634-Advertisement.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43693/plar-pipeline-for-lncrna-annotation-from-rna-seq-data</guid>
	<pubDate>Fri, 07 Jan 2022 06:18:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43693/plar-pipeline-for-lncrna-annotation-from-rna-seq-data</link>
	<title><![CDATA[PLAR: Pipeline for lncRNA annotation from RNA-seq data]]></title>
	<description><![CDATA[<p><span>Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs from other species identified by PLAR. Available&nbsp;</span><a href="ftp://ftp-igor.weizmann.ac.il/pub/gencode_orthologs_v3.txt.gz">here</a><span>.</span></p>
<p>&nbsp;</p>
<table border="1" cellspacing="0" cellpadding="0">
<tbody>
<tr>
<td rowspan="1" colspan="1">
<p><strong>Species</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Assembly</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Code</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Transcriptome</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>lncRNAs</strong></p>
</td>
<td rowspan="1" colspan="1">
<p><strong>Protein-coding</strong></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Human</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2Fhg19%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNE8D2HpSsuVeU5oUWAahOi6qUkSTA">hg19</a></p>
</td>
<td rowspan="1" colspan="1">
<p>hg19</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/hg19.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/hg19.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/hg19.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Rhesus</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FrheMac3%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNE9JVXif3Efp4FVGd43K-BjTjrpwQ">rheMac3</a></p>
</td>
<td rowspan="1" colspan="1">
<p>rm3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/rm3.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/rm3.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/rm3.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Marmoset</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FcalJac3%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNERBzLoHTuzHgX48eG9B5JwHfJeUg">calJac3</a></p>
</td>
<td rowspan="1" colspan="1">
<p>cj3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cj3.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cj3.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cj3.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Mouse</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2Fmm9%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNFn4Vo-WHyxU1rVfWVKfgYCsdbvBw">mm9</a></p>
</td>
<td rowspan="1" colspan="1">
<p>mm9</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mm9.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mm9.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mm9.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Rabbit</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2ForyCun2%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNHV9p_9vZ6-wtW3ofOStkok2HmGYg">oryCun2</a></p>
</td>
<td rowspan="1" colspan="1">
<p>oc2</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/oc2.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/oc2.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/oc2.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Dog</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FcanFam3%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNF_CL0xW8BrQktADnX1_cKL5r7Zyw">canFam3</a></p>
</td>
<td rowspan="1" colspan="1">
<p>cf3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cf3.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cf3.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cf3.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Ferret</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://hgdownload.soe.ucsc.edu/goldenPath/musFur1/bigZips/">musFur1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>oa3</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mf1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mf1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/mf1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Opossum</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FmonDom5%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNFeZz8NVTDJzR7uP7dIFOnACpuL7A">monDom5</a></p>
</td>
<td rowspan="1" colspan="1">
<p>md5</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/md5.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/md5.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/md5.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Chicken</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FgalGal4%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNFDsmU33MtwXzpaZZQHlrfI4OwsyA">galGal4</a></p>
</td>
<td rowspan="1" colspan="1">
<p>gg4</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/gg4.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/gg4.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/gg4.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Lizard</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FanoCar2%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEt4SZWNfHnA7MvJ6RWiql_yut4og">anoCar2</a></p>
</td>
<td rowspan="1" colspan="1">
<p>ac2</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ac2.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ac2.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ac2.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Coelacanth</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FlatCha1%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNH17mc_Am63OygexvbH391-GPoqBg">latCha1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>lc1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lc1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lc1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lc1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Zebrafish</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FdanRer7%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEgbPFFLxSYaERAtOLpbqIa5NmeCA">danRer7</a></p>
</td>
<td rowspan="1" colspan="1">
<p>dr7</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/dr7.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/dr7.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/dr7.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Stickleback</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload-test.sdsc.edu%2FgoldenPath%2FgasAcu1%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNHLiWgr54hkQYAxKeU9FJn0FKzEDA">gasAcu1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>ga1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ga1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ga1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ga1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Nile tilapia</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2ForeNil2%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEgaAhALRYb2ZYx_ItCO53E3mgZ2w">oreNil2</a></p>
</td>
<td rowspan="1" colspan="1">
<p>ot2</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ot2.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ot2.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/ot2.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Spotted gar</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload-test.cse.ucsc.edu%2FgoldenPath%2FlepOcu1%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNEbTQSWyyyZXk3eYiwkkAySMRdKTg">lepOcu1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>lo1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lo1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lo1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/lo1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Elephant shark</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload.soe.ucsc.edu%2FgoldenPath%2FcalMil1%2FbigZips%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNH2mc_GFk5E6kmVXftLL2lZVClIUQ">calMil1</a></p>
</td>
<td rowspan="1" colspan="1">
<p>cm1</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cm1.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cm1.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/cm1.coding.bed.gz">Download</a></p>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<p>Sea urchin</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="http://www.google.com/url?q=http%3A%2F%2Fhgdownload-test.cse.ucsc.edu%2FgoldenPath%2FstrPur4%2F&amp;sa=D&amp;sntz=1&amp;usg=AFQjCNHQ_Coxb_z7jTAweTFkO0KtHZKjEA">strPur4</a></p>
</td>
<td rowspan="1" colspan="1">
<p>sp4</p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/sp4.transcriptome.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/sp4.lncRNAs.bed.gz">Download</a></p>
</td>
<td rowspan="1" colspan="1">
<p><a href="ftp://ftp-igor.weizmann.ac.il/pub/CLAP/data/sp4.coding.bed.gz">Download</a></p>
</td>
</tr>
</tbody>
</table>
<p>&nbsp;</p><p>Address of the bookmark: <a href="http://www.weizmann.ac.il/Biological_Regulation/IgorUlitsky/PLAR" rel="nofollow">http://www.weizmann.ac.il/Biological_Regulation/IgorUlitsky/PLAR</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19248/bioinformatics-jrfrasrf-position-at-institute-of-cytology-and-preventive-oncology-icpo</guid>
  <pubDate>Wed, 19 Nov 2014 20:16:32 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/RA/SRF position at Institute of Cytology and Preventive Oncology (ICPO)]]></title>
  <description><![CDATA[
<p>Institute of Cytology and Preventive Oncology (ICPO) I-7, Sector-39, Noida-201301</p>

<p>Candidates having the below mentioned qualifications may appear for walk in interview at ICPO on 2nd December 2014 between 10.00 AM and 12:00 PM under the below time bound projects under Dr. Subhash M. Agarwal, Scientist C. The post is purely temporary and co-terminus with the project.</p>

<p>Research Assistant (One)<br />25650/- consolidated<br />Discovery of EGFR secondary mutant inhibitors using structure based screening approach (ICMR)<br />Duration: 7 months</p>

<p>Essential: M.Sc./ M.Tech in Bioinformatics or any other related subject with good academic record.</p>

<p>Desirable: Experience in scripting and molecular docking.<br />	<br />Below 30 years</p>

<p>Junior Research Fellow (One)</p>

<p>16,000 + 30% HRA = Rs. 20800/-</p>

<p>Identification of novel inhibitors targeting EGFR using an integrated ligand and structure based approach (DBT)</p>

<p>Duration: 9 months</p>

<p>Essential: M.Sc./ M.Tech in Bioinformatics or any other related subject with good academic record. Candidates with CSIR-UGC / ICMR, NET qualification will be preferred</p>

<p>Desirable: Experience in scripting, QSAR and molecular docking.<br />	<br />Below 28 years</p>

<p>Interested eligible candidates may send their applications with Bio-data by email at (smagarwal@gmail.com) or by post addressed to Dr. Subhash M Agarwal, Scientist C, Institute of Cytology and Preventive Oncology (ICPO) I-7, Sector-39, Noida-201301 so as to reach latest by 1st December, 2014. The candidates may appear for interview at ICPO along with 3 copies of CV, photo and relevant certificates of qualifications in original and reprints of publications at the time of interview. It should be noted that No TA/DA will be paid for the walk in Interview.</p>

<p>Advertisement: www.icpo.org.in/advt-walk-in-interview.docx</p>
]]></description>
</item>

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