<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/43698?offset=100 https://bioinformaticsonline.com/bookmarks/view/44474/claw-chloroplast-long-read-assembly-workflow Wed, 21 Feb 2024 12:37:46 -0600 https://bioinformaticsonline.com/bookmarks/view/44474/claw-chloroplast-long-read-assembly-workflow <![CDATA[CLAW: Chloroplast Long-read Assembly Workflow]]> CLAW (Chloroplast Long-read Assembly Workflow) is an mostly-automated Snakemake-based workflow for the assembly of chloroplast genomes. CLAW uses chloroplast long-reads, which are baited out of larger read libraries (e.g., an Oxford Nanopore Technologies MinION read library derived from photosynthetic tissue), for assembly with Flye and/or Unicycler. CLAW was designed with the novice bioinformatician in mind - it is easy to install and easy to use, requiring only minimal user input.

Address of the bookmark: https://github.com/aaronphillips7493/CLAW

]]> LEGE https://bioinformaticsonline.com/bookmarks/view/41875/virtualflow-a-versatile-parallel-workflow-platform-for-carrying-out-virtual-screening Sat, 13 Jun 2020 13:03:09 -0500 https://bioinformaticsonline.com/bookmarks/view/41875/virtualflow-a-versatile-parallel-workflow-platform-for-carrying-out-virtual-screening <![CDATA[VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening]]>  related tasks on Linux-based computer clusters of any type and size which are managed by a batchsystem (such as SLURM). 

Currently, there exist two versions of VirtualFlow, which are tailored to different types of tasks:

They use the same core technology regarding the workflow management and parallelization, and they can be used individually or in concert with each other. Additional versions are expected to arrive in the future. 

https://github.com/VirtualFlow

https://www.nature.com/articles/s41586-020-2117-z?

Address of the bookmark: https://virtual-flow.org/

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