Rahul Nayak
A Bioinformatician
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IgBLAST 1.17 is now available with improved identification of productive V gene sequences
By Jit 1483 days agoIgBLAST 1.17 is now available with improved identification of productive V gene sequencesMACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
By Jit 2105 days agobioweb.supagro.inra.fr - MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multiple frameshifts and/or stop codons. MACSE is hence the first automatic solution to align protein-coding gene datasets containing...IMTECH Lab
Computer Aided Protein Structure Prediction; Identification of Vaccine Candidates (T-Epitope prediction); Analysis of Nucleotide/Protein Sequences; Development of Web Server/ Software; Creation of Public Domain Resources in Biology Present...You and your friend have similar DNA !!!
By Jit 3772 days agoYour friends may be as genetically similar to you as your fourth cousin ...AccNET
By Jitendra Narayan 2969 days agosourceforge.net - AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET...A5-miseq
By Jit 3019 days agosourceforge.net - _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note: There are many situations where A5-miseq is not...Bioinformatics tools and software
By Jit 3063 days agodrive5.com - USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes....MEGAN6
By Neel 3043 days ago Comments (1)ab.inf.uni-tuebingen.de - Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one application. Taxonomic analysis using the NCBI taxonomy or a customized...valet
By Jit 2984 days agowww.cbcb.umd.edu - VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct distance from each other in the...vcfR
By Archana Malhotra 3018 days agocran.r-project.org - Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular format for this data. The format of these files and their content is discussed in...
