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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/4408?offset=50</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38449/koala-keggs-internal-annotation-tool-for-k-number-assignment-of-kegg-genes-using-ssearch-computation</guid>
	<pubDate>Wed, 12 Dec 2018 09:16:55 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38449/koala-keggs-internal-annotation-tool-for-k-number-assignment-of-kegg-genes-using-ssearch-computation</link>
	<title><![CDATA[KOALA: KEGG&#039;s internal annotation tool for K number assignment of KEGG GENES using SSEARCH computation]]></title>
	<description><![CDATA[<p>KOALA (KEGG Orthology And Links Annotation) is KEGG's internal annotation tool for&nbsp;<a href="https://www.kegg.jp/kegg/ko.html">K number</a>&nbsp;assignment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostKOALA assign K numbers to the user's sequence data by&nbsp;<a href="http://www.ncbi.nlm.nih.gov/blast/">BLAST</a>&nbsp;and&nbsp;<a href="http://www.bi.cs.titech.ac.jp/ghostx/">GHOSTX</a>&nbsp;searches, respectively, against a nonredundant set of KEGG GENES. Annotate Sequence in KEGG Mapper and Pathogen Checker in KEGG Pathogen are special interfaces to the BlastKOALA server and can be executed in an interactive mode. &nbsp;&nbsp; See&nbsp;<a href="https://www.kegg.jp/blastkoala/help_blastkoala.html" target="_blastkoala">Step-by-step Instructions</a>.</p>
<div>Reference: Kanehisa, M., Sato, Y., and Morishima, K. (2016) BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J. Mol. Biol. 428, 726-731. [<a href="http://www.ncbi.nlm.nih.gov/pubmed/26585406">pubmed</a>] [<a href="https://doi.org/10.1016/j.jmb.2015.11.006">pdf</a>]</div><p>Address of the bookmark: <a href="https://www.kegg.jp/blastkoala/" rel="nofollow">https://www.kegg.jp/blastkoala/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/13852/ebola-virus-disease-evdor-ebola-haemorrhagic-fever</guid>
	<pubDate>Sun, 10 Aug 2014 13:08:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/13852/ebola-virus-disease-evdor-ebola-haemorrhagic-fever</link>
	<title><![CDATA[Ebola virus disease (EVD)or Ebola haemorrhagic fever !!!]]></title>
	<description><![CDATA[<p>Ebola virus disease (EVD)or Ebola haemorrhagic fever is a severe and often deadly illness in humans, caused by the Ebola virus. The disease has high mortality rate, killing upto 90% of people who are infected.</p><p><img src="http://s4.reutersmedia.net/resources/r/?m=02&amp;d=20140808&amp;t=2&amp;i=959839176&amp;w=580&amp;fh=&amp;fw=&amp;ll=&amp;pl=&amp;r=LYNXMPEA770BX" width="580" height="452" alt="image" style="border: 0px;"></p><p><br />The ongoing 2014 West Africa Ebola outbreak is considered to be the largest and longest outbreak ever recorded of Ebola, killing at least 932 people and infecting more than 1,700 till date since March in Sierra Leone, Guinea, Nigeria and Liberia.<br /><br />Hence, the World Health Organisation (WHO) on 8 August, 2014 declared the killer Ebola epidemic ravaging parts of West Africa an international health emergency.<br /><br />Causes<br /><br />EVD is caused by infection with a virus of the family Filoviridae, genus Ebolavirus. While there are five identified sub-species of Ebolavirus, four viruses cause disease in humans. They are Bundibugyo virus (BDBV), Ebola virus (EBOV), Sudan virus (SUDV), Ta&iuml; Forest virus (TAFV).<br /><br />The fifth virus, Reston virus (RESTV), is not considered to be disease-causing in humans.<br /><br />According to WHO, EVD first appeared in 1976 in two simultaneous outbreaks, in Nzara, Sudan, and in Yambuku, Democratic Republic of Congo. The latter was in a village situated near the Ebola River from which the disease takes its name.</p><p>How does it spread?<br /><br />It is still unclear how Ebola spreads. However, it is believed that the first pateint becomes infected through contact with an infected animal's body fluids.<br /><br />Human-to-human transmission can occur through direct contact with blood, organs or other body fluids of infected people or exposure to objects such as needles and syringes that have been contaminated with infected secretions.<br /><br />Ebola can also be transmitted from men who have recovered from the disease through semen as it is infectious for up to 7 weeks.<br /><br />Infected dead bodies can spread Ebola as they are still infectious. So mourners who have direct contact with the body of deceased person can also get the disease.<br /><br />Who is most at risk?<br /><br />Health-care workers who do not wear appropriate protective clothing and family members who are in close contact with infected people or deceased patients.<br /><br />Signs and symptoms:<br /><br />Symptoms may occur between 2 and 21 days after contracting the infection. Common signs of Ebola include:</p><p><img src="https://scontent-b-sin.xx.fbcdn.net/hphotos-xap1/t1.0-9/p720x720/10494629_873450929332827_3274653669306581755_n.jpg" width="720" height="720" alt="image" style="border: 0px;"></p><p>Fever<br /><br />Headache<br /><br />Muscle, abdominal and joint pain<br /><br />Sore throat<br /><br />Weakness<br /><br />Diarrhea<br /><br />Vomit or cough up blood<br /><br />Chest pain<br /><br />Difficulty in breathing and swallowing<br /><br />Rash<br /><br />Hiccups<br /><br />Bleeding inside and outside the body<br /><br />Prevention<br /><br />Currently there is no vaccine available for humans. But the infection can be controlled through the use of recommended protective measures such as:<br /><br />Avoid contacting infected blood or secretions, including from those who are dead .<br /><br />Using standard precautions for all patients in the healthcare setting.<br /><br />Sterilizing equipment, and wearing protective clothing including masks, gloves, gowns and goggles.<br /><br />Washing your hands with soaps or detergents.<br /><br />Disinfecting your surroundings.<br /><br />Isolate people who have Ebola symptoms.<br /><br />Culling of infected animals, with close supervision of burial or incineration of carcasses.<br /><br />Yet, not travelling to the areas or countries where the virus is found is the best way to avoid Ebola.</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43643/corona-virus-literature</guid>
	<pubDate>Sun, 12 Dec 2021 23:30:56 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43643/corona-virus-literature</link>
	<title><![CDATA[Corona Virus Literature !]]></title>
	<description><![CDATA[<p><span><span>LitCovid</span>&nbsp;is a curated literature hub for tracking up-to-date scientific information about the 2019 novel Coronavirus.</span><span>&nbsp;It is the most comprehensive resource on the subject, providing a central access to&nbsp;</span><span>201482</span><span>&nbsp;(and&nbsp;</span><span>growing</span><span>) relevant articles in PubMed. The articles are updated daily and are further categorized by different research topics (e.g.&nbsp;</span><span>Long Covid</span><span>) and geographic locations for improved access. You can learn more at&nbsp;</span><a href="https://www.nature.com/articles/d41586-020-00694-1" target="_blank">Chen et al. Nature</a><span>&nbsp;(2020) or our&nbsp;</span><span>FAQ</span><span>, and download our data&nbsp;</span><a href="https://www.ncbi.nlm.nih.gov/research/coronavirus/#data-download">here</a><span>.</span></p>
<p>https://www.ncbi.nlm.nih.gov/research/coronavirus/</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/research/coronavirus/" rel="nofollow">https://www.ncbi.nlm.nih.gov/research/coronavirus/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44518/virus-bioinformatics-tools</guid>
	<pubDate>Wed, 24 Apr 2024 06:19:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44518/virus-bioinformatics-tools</link>
	<title><![CDATA[Virus Bioinformatics Tools]]></title>
	<description><![CDATA[<p><span>Bioinformatics tools play a crucial role in studying viruses, enabling researchers to analyze their genetic makeup, structure, function, and evolution. Here are some commonly used bioinformatics tools for virus research</span></p>
<p>https://evirusbioinfc.notion.site/18e21bc49827484b8a2f84463cb40b8d?v=92e7eb6703be4720abf17a901bc9a947</p><p>Address of the bookmark: <a href="https://evirusbioinfc.notion.site/18e21bc49827484b8a2f84463cb40b8d?v=92e7eb6703be4720abf17a901bc9a947" rel="nofollow">https://evirusbioinfc.notion.site/18e21bc49827484b8a2f84463cb40b8d?v=92e7eb6703be4720abf17a901bc9a947</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/5731/influenza-animation-flu-virus-mechanism</guid>
	<pubDate>Thu, 17 Oct 2013 19:43:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/5731/influenza-animation-flu-virus-mechanism</link>
	<title><![CDATA[Influenza animation - flu virus mechanism]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/YSgkoldBNkI" frameborder="0" allowfullscreen></iframe>Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent further spread of influenza. 

Client: Crucell
Direction, Design & Animation: Daniel Lim, 2Preform
Music & Sound Design: Javier Barrero, Logical Disorder
Production Company: David Hager, All Terrain Media]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41886/coronavirus-sars-cov-2</guid>
	<pubDate>Wed, 17 Jun 2020 11:18:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41886/coronavirus-sars-cov-2</link>
	<title><![CDATA[Coronavirus SARS-CoV-2]]></title>
	<description><![CDATA[<p><span>Used Nanographics Vj, our real-time molecular visualization and animation software, to create this video showing the structure of the virus. In the video, you can see the latest theory on how the RNA is organized inside of the virus particle.</span></p>
<p><span><span>On this page, you can download&nbsp;</span><a href="https://nanographics.at/projects/sars-cov-2/sars-cov-2-renders.zip">high resolution images</a><span>&nbsp;of our renderings. We made them with transparent background, so that you can use it in your work. As the research progresses, we will keep updating the model as well as the images on this page, so stay tuned!</span></span></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://nanographics.at/projects/sars-cov-2/" rel="nofollow">https://nanographics.at/projects/sars-cov-2/</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43639/fastv-detect-virus</guid>
	<pubDate>Sat, 11 Dec 2021 08:04:10 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43639/fastv-detect-virus</link>
	<title><![CDATA[fastv - detect virus]]></title>
	<description><![CDATA[<p><span>fastv is an ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. It detects microbial sequences from FASTQ data, generates JSON reports and visualizes the result in HTML reports. This tool can be used to detect viral infectious diseases, like COVID-19. This tool supports both short reads (Illumina, BGI, etc.) and long reads (ONT, PacBio, etc.)</span></p><p>Address of the bookmark: <a href="https://github.com/OpenGene/fastv" rel="nofollow">https://github.com/OpenGene/fastv</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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