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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/44313?offset=160</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36837/ranbow-a-haplotype-assembler-for-polyploid-genomes</guid>
	<pubDate>Fri, 01 Jun 2018 07:21:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36837/ranbow-a-haplotype-assembler-for-polyploid-genomes</link>
	<title><![CDATA[Ranbow: a haplotype assembler for polyploid genomes]]></title>
	<description><![CDATA[Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can also be applied to other polyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of variant calling results and to infer the evolutionary history of the organism´s genome. Ranbow has three main modes of function:

ranbow hap: for haplotyping
ranbow eval: for evaluating of the assemble haplotypes by gold standard (long) reads 
ranbow phylo: for the phylogenetic analysis<p>Address of the bookmark: <a href="https://www.molgen.mpg.de/ranbow" rel="nofollow">https://www.molgen.mpg.de/ranbow</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37980/csbfinder-discovery-of-colinear-syntenic-blocks-across-thousands-of-prokaryotic-genomes</guid>
	<pubDate>Wed, 24 Oct 2018 22:12:27 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37980/csbfinder-discovery-of-colinear-syntenic-blocks-across-thousands-of-prokaryotic-genomes</link>
	<title><![CDATA[CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes]]></title>
	<description><![CDATA[<p>CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via command line.</p>
<p>CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (<span>CSBs</span>) - groups of genes that are consistently located close to each other, in the same order, across a wide range of taxa. CSBFinder incorporates an efficient algorithm that identifies CSBs in large genomic datasets. The discovered CSBs are ranked according to a probabilistic score and clustered to families according to their gene content similarity.</p><p>Address of the bookmark: <a href="https://github.com/dinasv/CSBFinder" rel="nofollow">https://github.com/dinasv/CSBFinder</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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