<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/44628?offset=500 https://bioinformaticsonline.com/bookmarks/view/2461/taverna-workflow-management-system Thu, 15 Aug 2013 19:34:32 -0500 https://bioinformaticsonline.com/bookmarks/view/2461/taverna-workflow-management-system <![CDATA[Taverna Workflow Management System]]> Taverna is an open source domain independent Workflow Management System – a suite of tools used to design and execute scientific workflows. Taverna has been created by the myGrid project and is funded through a range of organisations and projects.

The Taverna suite is written in Java and includes the Taverna Engine(used for enacting workflows) that powers both the Taverna Workbench(the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of workflows from a terminal.

Address of the bookmark: http://www.taverna.org.uk/

]]> Madhvan Reddy https://bioinformaticsonline.com/bookmarks/view/43698/mimilook-a-phylogenetic-workflow-for-detection-of-gene-acquisition-in-major-orthologous-groups-of-megavirales Mon, 10 Jan 2022 06:32:22 -0600 https://bioinformaticsonline.com/bookmarks/view/43698/mimilook-a-phylogenetic-workflow-for-detection-of-gene-acquisition-in-major-orthologous-groups-of-megavirales <![CDATA[MimiLook: A Phylogenetic Workflow for Detection of Gene Acquisition in Major Orthologous Groups of Megavirales]]> This tool detects statistically validated events of gene acquisitions with the help of the T-REX algorithm by comparing individual gene tree with NCBI species tree. In between the steps, the workflow decides about handling paralogs, filtering outputs, identifying Megavirale specific OGs, detection of HGTs, along with retrieval of information about those OGs that are monophyletic with organisms from cellular domains of life. 

https://www.readcube.com/articles/10.3390%2Fv9040072

Address of the bookmark: https://pubmed.ncbi.nlm.nih.gov/28387730/

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/41875/virtualflow-a-versatile-parallel-workflow-platform-for-carrying-out-virtual-screening Sat, 13 Jun 2020 13:03:09 -0500 https://bioinformaticsonline.com/bookmarks/view/41875/virtualflow-a-versatile-parallel-workflow-platform-for-carrying-out-virtual-screening <![CDATA[VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening]]>  related tasks on Linux-based computer clusters of any type and size which are managed by a batchsystem (such as SLURM). 

Currently, there exist two versions of VirtualFlow, which are tailored to different types of tasks:

They use the same core technology regarding the workflow management and parallelization, and they can be used individually or in concert with each other. Additional versions are expected to arrive in the future. 

https://github.com/VirtualFlow

https://www.nature.com/articles/s41586-020-2117-z?

Address of the bookmark: https://virtual-flow.org/

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