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<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/44746?offset=910</link>
	<atom:link href="https://bioinformaticsonline.com/related/44746?offset=910" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44581/biokit-a-set-of-tools-dedicated-to-bioinformatics-data-visualisation</guid>
	<pubDate>Tue, 18 Jun 2024 02:04:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44581/biokit-a-set-of-tools-dedicated-to-bioinformatics-data-visualisation</link>
	<title><![CDATA[BioKit: a set of tools dedicated to bioinformatics, data visualisation]]></title>
	<description><![CDATA[<p><span>BioKit is a set of tools dedicated to bioinformatics, data visualisation (</span><a href="https://biokit.readthedocs.io/en/latest/references.html#module-biokit.viz" title="biokit.viz"><code><span>biokit.viz</span></code></a><span>), access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It also contains more advanced tools related to data analysis (e.g.,&nbsp;</span><a href="https://biokit.readthedocs.io/en/latest/references.html#module-biokit.stats" title="biokit.stats"><code><span>biokit.stats</span></code></a><span>). Since R is quite common in bioinformatics, we also provide a convenient module to run R inside your Python scripts or shell (:mod:biokit.rtools module).</span></p><p>Address of the bookmark: <a href="https://biokit.readthedocs.io/en/latest/index.html" rel="nofollow">https://biokit.readthedocs.io/en/latest/index.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10459/associate-professor-bio-informatics-at-university-of-allahabad-in-allahabad</guid>
  <pubDate>Wed, 07 May 2014 00:26:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Associate Professor - Bio-Informatics at University of Allahabad in Allahabad]]></title>
  <description><![CDATA[
<p>No of vacancies: 01</p>

<p>Pay scale: Pay Band of Rs. 37400-67000 with AGP of Rs. 9000.</p>

<p>i. Educational Qualification: Good academic record with a Ph.D. Degree in the concerned/allied/relevant disciplines.</p>

<p>ii. A Master's Degree with at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed).</p>

<p>iii. A minimum of eight years of experience of teaching and/or research in an academic/research position equivalent to that of Assistant Professor in a University, College or Accredited Research Institution/industry excluding the period of Ph.D. research with evidence of published work and a minimum of 5 publications as books and/or research/policy papers.</p>

<p>iv. Contribution to educational innovation, design of new curricula and courses, and technology - mediated teaching learning process with evidence of having guided doctoral candidates and research students.</p>

<p>v. A minimum score as stipulated in the Academic Performance Indicator (API) based Performance Based Appraisal System (PBAS), set out in UGC Regulation.</p>

<p>Download application form from website: http://www.allduniv.ac.in/</p>

<p>Send your application to the Registrar, University of Allahabad, Allahabad-211002 (U.P.) on or before 30th April 2014</p>

<p>For more details: http://www.allduniv.ac.in/images/adv/backlog/advt-details.pdf OR http://www.allduniv.ac.in/images/news/extension-notice.pdf</p>

<p>Last Apply Date: 30 May 2014</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/19272/translate2r</guid>
	<pubDate>Fri, 21 Nov 2014 01:16:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/19272/translate2r</link>
	<title><![CDATA[translate2R]]></title>
	<description><![CDATA[<p>After their presentation at the international &ldquo;user!&rdquo; conference, data analysis specialist <a href="http://www.eoda.de/en/" target="_blank">eoda</a> starts the public alpha testing of <a href="http://www.eoda.de/en/translate2R.html" target="_blank">translate2R</a>. With the start of alpha testing the innovative migration solution by the company hailing from Kassel discards the working title &ldquo;translateR&rdquo; and takes on the final product brand name &ldquo;translate2R&rdquo;. translate2R is a service for the automated translation of SPSS&reg; syntax to R code, therefore supporting data analysts with a quick and low-risk migration to R.</p><p>The manual translation of many, frequently rather complex SPSS scripts often presents itself as a tedious and error-prone task, and represents a rather large obstacle for many analysts and companies to migrate to a modern, open source data management and analysis tool like R. With translate2R this hurdle will be diminished substantially.</p><p>Find at https://service.eoda.de/translater/?lang=en</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/10664/dna-replication-process-3d-animation</guid>
	<pubDate>Sat, 10 May 2014 04:41:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/10664/dna-replication-process-3d-animation</link>
	<title><![CDATA[DNA Replication Process [3D Animation]]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/27TxKoFU2Nw" frameborder="0" allowfullscreen></iframe>See an organised list of all the animations: http://doctorprodigious.wordpress.com/hd-animations/]]></description>
	
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide</guid>
	<pubDate>Thu, 28 May 2015 21:10:12 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/22454/one-page-r-survival-guide</link>
	<title><![CDATA[One page R survival guide !!]]></title>
	<description><![CDATA[<p><span style="font-style: normal; color: #000000; float: none;">There any many of the documents have been developed and tested by scientist around the world. I found this one really useful. The data used is available for download as<span>&nbsp;</span></span><a href="http://onepager.togaware.com/data.zip">data.zip</a><span style="font-style: normal; color: #000000; float: none;">.</span></p><p><span style="font-style: normal; color: #000000; float: none;">Reference@http://www.datasciencecentral.com/profiles/blogs/one-page-r-a-survival-guide-to-data-science-with-r</span></p><ul>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Templates for the Data Scientist<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">A Template for Preparing Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/DataO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DataO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">A Template for Building Models:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/ModelsO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ModelsO.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Getting Started as a Data Scientist<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Getting Started with R and Rattle:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/StartL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/StartG.pdf">Laboratory</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Introducing and Interacting with R:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/IntroRL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/IntroRR.pdf">Laboratory</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">BasicR - OnePage(R) - Writing R scripts</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Dealing With Data<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Read Data into R:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/ReadO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ReadO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Explore and Summarise Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/SummaryO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/SummaryO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Transform Data:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/TransformO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/TransformO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/DateTimeRB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Dealing with Dates and Time:</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/DateTimeR.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/DateTimeR.R">R</a>) Dates and Time</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Visualising Data with GGPlot2:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/GGPlot2O.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/GGPlot2O.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Visualising Data with Maps</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/MapsO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/MapsO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Spatial<span>&nbsp;</span>(R) Spatial Analysis</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Handling Big Data</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/BigDataO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/BigData.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Descriptive Analytics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Cluster Analysis:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/ClustersL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/ClustersO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/Clusters.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Association Analysis:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/ARulesL.pdf">Lecture</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Predictive Analytics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Decision Trees:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/DTreesL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesO.R">R</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/DTreesG.pdf">Rattle</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Ensembles of Decision Trees:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/EnsemblesL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EnsemblesO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EnsemblesO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">SVM (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">KernLab (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">NeuralNetworks (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">NNet (R)</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Model Delivery<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Evaluating Models:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/EvaluationO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/EvaluationO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Evaluation (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Scoring (R)</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">PMML (R) Exporting Models for Deployment</li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Advanced Topics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Text Mining:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/TextMiningO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/TextMiningO.R">R</a></li>
</ol></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Advanced R Topics<ol style="margin: 0px; padding: 0px 0px 0px 1.5em; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/PlotsB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Plots</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Plots.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Plots.R">R</a>) Miscellaneous Plots</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/FunctionsB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Functions</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Functions.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Functions.R">R</a>) Writing Functions in R</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><a href="http://togaware.com/onepager/ParallelB"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Parallel</span></a><span>&nbsp;</span>(<a href="http://onepager.togaware.com/Parallel.pdf">PDF</a>,<span>&nbsp;</span><a href="http://onepager.togaware.com/Parallel.R">R</a>) Parallel Execution</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Packaging (R) Pulling it Together into a Package</li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Doing R with Style:</span><span>&nbsp;</span>*<a href="http://onepager.togaware.com/StyleO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/StyleO.R">R</a></li>
<li style="margin: 0px; padding: 0px; border: 0px currentColor; font-style: inherit; font-weight: inherit; vertical-align: baseline;"><span style="margin: 0px; padding: 0px; border: 0px none currentcolor; font-style: inherit; font-weight: inherit; vertical-align: baseline;">Literate Data Mining with KnitR:</span><span>&nbsp;</span>*<a href="http://togaware.com/onepager/KnitRL.pdf">Lecture</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/KnitRO.pdf">OnePageR</a><span>&nbsp;</span>- *<a href="http://onepager.togaware.com/KnitRO.R"></a></li>
</ol></li>
</ul>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10748/bioinformatics-phd-at-cuk-kerala</guid>
  <pubDate>Sat, 10 May 2014 20:21:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics PhD at CUK Kerala]]></title>
  <description><![CDATA[
<p>Applications are invited from highly motivated students (UGC-CSIR-JRF) with a background in Genomics/ Biotechnology/ Molecular Microbiology/ Biochemistry and Bioinformatics to pursue research leading to Ph.D. in the following areas;</p>

<p>    1. Cancer Genomics</p>

<p>    2. Microbial Genetics and Metagenomics</p>

<p>    3. Human Infective Diseases</p>

<p>    4. Computational Drug Design</p>

<p>Interested candidates may apply to Dr. Ranjith N. Kumavath, Assistant Professor &amp; Head, Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Padannakad (PO), Nileshwar, Kasaragod-671328,Kerala. Email: RNkumavath@gmail.com</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/41220/a-quick-guide-to-phred-scaling</guid>
	<pubDate>Sat, 22 Feb 2020 02:57:19 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/41220/a-quick-guide-to-phred-scaling</link>
	<title><![CDATA[A quick guide to Phred scaling]]></title>
	<description><![CDATA[<p>A quick guide to Phred scaling<br /><br />&bull; Phred value = &minus;10 * log10(&epsilon;)<br /><br />&bull; Examples:<br />&bull; 90% confidence (10% error rate) = Q10<br />&bull; 99% confidence (1% error rate) = Q20<br />&bull; 99.9% confidence (.1% error rate) = Q30<br /><br />&bull; SAM encoding adds 33 to the value (because<br />ASCII 33 is the first visible character)</p>]]></description>
	<dc:creator>biogeek</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/10925/a-brief-bioinformatics-tutorial</guid>
	<pubDate>Wed, 21 May 2014 12:50:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/10925/a-brief-bioinformatics-tutorial</link>
	<title><![CDATA[A Brief Bioinformatics Tutorial]]></title>
	<description><![CDATA[<p>This is about how to use a computer to find what is known about a gene of interest and also how to get new insights about it.</p>
<p>The tutorial is divided in three main parts:</p>
<ul>
<li>In the <strong>Sequence </strong>part, you will see how to look efficiently for a particular protein sequence, how to blast it against the database of your choice to find homologues, how to perform a multiple alignment of the homologues you've selected and how to edit this alignment.</li>
<li>The <strong>Structure </strong>part is about molecular visualization, homology modeling and structural domain prediction.</li>
<li>In the <strong>Function </strong>part, you will be introduced to you 3 useful servers to investigate the function of a protein. i.e. finding interactors, co-expressed genes, see a phylogenetic profile, easily access papers citing your gene etc ...</li>
</ul>
<p>During all the three parts, we will use the <em>S. cerevisiae </em>VPS36 protein as an example.</p><p>Address of the bookmark: <a href="http://www.mrc-lmb.cam.ac.uk/rlw/text/bioinfo_tuto/introduction.html" rel="nofollow">http://www.mrc-lmb.cam.ac.uk/rlw/text/bioinfo_tuto/introduction.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/33449/ra-bioinformatics-at-nipgr-india</guid>
  <pubDate>Tue, 06 Jun 2017 04:21:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NIPGR,  INDIA]]></title>
  <description><![CDATA[
<p>Applications are invited from suitable candidates for filling up the purely temporary positions of one Research Associate (RA) and one Junior Research Fellow (JRF) in the DBT- CPCFG Sub-Project 2B entitled “Understanding genetic and molecular basis of Ascochyta blight resistance in chickpea” under the supervision of Dr. Praveen Verma, Scientist, NIPGR. </p>

<p>Research Associate (one post): Emoluments as per DST/DBT norms &amp; as sanctioned in the project</p>

<p>Qualification: Candidates having Ph.D. degree (awarded) in any discipline of Life Sciences with good publication record are eligible to apply. Candidates having prior experience in the area of Genetic and molecular analysis of plant/fungus for disease resistance/susceptibility of transcriptome and genome analysis will be preferred.</p>

<p>Junior Research Fellow (one post): Emoluments as per DST/DBT norms &amp; as sanctioned in the project</p>

<p>Qualification: Candidates having M.Sc./M.Tech degree in any discipline of Life Sciences/Engineering (with minimum 55% marks) are eligible to apply. The Candidate having prior work experience in Molecular biology of plants/animal/fungus or Computational biology with experience in analysis of next-generation sequencing data, protein-protein interaction and system biology will be given preference.</p>

<p>The positions are purely temporary and are co-terminus with the project. The initial appointment will be for one year, which can be extended/curtailed on the basis of assessment of the candidate’s performance and discretion of the Competent Authority. The eligible candidates may further be shortlisted based on the qualification/experience depending on the total number of applications received. NIPGR reserves the right to select the candidate against the above post depending upon the qualification(s) and experience of the candidate. Reservation of post shall be as per Govt. of India norms.</p>

<p>Eligible candidates may apply by sending their complete application in the enclosed format. </p>

<p>The attested copies of the certificates and proof of research experience (if any) are to be attached with the hard copy of application. The applications should reach at the address given below within 15 days from the date of advertisement. The envelope must be superscribed by “Application for the Post of RA/JRF in the CPCFG Project” of Dr. Praveen Verma.</p>

<p>http://www.nipgr.res.in/files/careers/app_format_RA_JRF.docx</p>

<p>Contact Person address <br />Dr. Praveen Verma<br />Staff Scientist-VI &amp; Principal Investigator ,<br />National Institute of Plant Genome Research ,(NIPGR)<br />Aruna Asaf Ali Marg, P.O. Box NO. 10531,<br />New Delhi - 110067</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/11035/bioinformatics-jrfsrf-position-at-nii</guid>
  <pubDate>Sun, 25 May 2014 16:54:04 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at NII]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF IMMUNOLOGY, NEW DELHI-110067</p>

<p>Applications are invited for the position of Senior Research Fellow for the following time-bound sponsored project as per the details given below:</p>

<p>1. BTIS project on, “Bioinformatics Center-National Infrastructural Facility in the Area of Immunology” funded by DBT</p>

<p>Senior Research Fellow (P) (One Position only)</p>

<p>Dr. Debasisa Mohanty<br />Staff Scientist-VI<br />deb@nii.res.in</p>

<p>Qualifications: M.Sc in Biological Sciences or Biotechnology with at least 04 years of Research experience in Bioinformatics or computational Biology after the master’s degree is essential.</p>

<p>Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications &amp; experience</p>

<p>Rs. 18,000/- per month consolidated plus 30% HRA if Leading to Ph.D/NET/GATE Qualified otherwise Rs. 14,000/- per month + 30% HRA.</p>

<p>Job description: The candidate should be well versed in programming in PERL/C++/HTML/CGI, web server and portal development, computational analysis of<br />protein structure &amp; function, molecular dynamics simulations and use of high performance computing systems.</p>

<p>GENERAL TERMS AND CONDITIONS:-</p>

<p>1. The candidates selected for the above posts will be on contract for one year or duration of the project whichever is shorter, at a time.<br />2. No hostel/ housing facility will be provided.<br />3. Number of posts may vary and shall be need based. Advertisement is no commitment.<br />4. Applicants may clearly mention the category they belong to i.e. SC/ST/OBC/PH and attach documentary proof of the same.<br />5. No TA/DA will be paid for attending the interview, if called for.<br />6. Apart from sending application in the prescribed format given below, candidates should send complete Curriculum Vitae along with the names of three referees. Curriculum Vitae should contain details of the experimental expertise.</p>

<p>HOW TO APPLY Interested candidates may apply directly, STRICTLY IN THE PRESCRIBED FORMAT GIVEN BELOW, through e-mail, to the Investigator of the project, clearly indicating the name of the project along with their complete C.V., e-mail id, fax numbers, telephone numbers. Only Short listed candidates will be called for interview and they required to submit attested copies of all their certificates and a Demand Draft of Rs 100/- drawn on Canara Bank or Indian Bank payable at Delhi/New Delhi in favour of the Director, NII (SC / ST and PH candidates are exempted subject to submission of documentary proof), at the time of interview.</p>

<p>LAST DATE OF RECEIPT OF APPLICATIONS: 06th June, 2014</p>

<p>Advertisement</p>

<p>www1.nii.res.in/sites/default/files/projectappointment-Dr.Mohanty-6June2014.pdf</p>
]]></description>
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