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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/44910?offset=980</link>
	<atom:link href="https://bioinformaticsonline.com/related/44910?offset=980" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32483/cla-contig-layout-authenticator</guid>
	<pubDate>Fri, 05 May 2017 05:58:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32483/cla-contig-layout-authenticator</link>
	<title><![CDATA[CLA: Contig-Layout-Authenticator]]></title>
	<description><![CDATA[<p><span>To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads, resulting in better assembled genomes. Moreover, CLA also hints at probable misassemblies and contaminations, for the users to cross-check before constructing the consensus draft. The CLA pipeline was designed and trained extensively on various bacterial genome datasets for the ordering and scaffolding of large repetitive contigs. The tool has been validated and compared favorably with other widely-used scaffolding and ordering tools using both simulated and real sequence datasets. CLA is a user friendly tool that requires a single command line input to generate ordered scaffolds.</span></p>
<p><span>Script&nbsp;https://sourceforge.net/projects/c-l-authenticator/files/</span></p><p>Address of the bookmark: <a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0155459" rel="nofollow">http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0155459</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1216/project-assistant-in-serb-dst-sponsored-project</guid>
  <pubDate>Fri, 02 Aug 2013 10:31:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant in SERB-DST sponsored project]]></title>
  <description><![CDATA[
<p>Advertisement for post of Project Assistant in SERB-DST sponsored project @ Bioinformatics, Karunya University</p>

<p>Applications are invited for the post of Project Assistant to work in the following<br />project.</p>

<p>• Title of the project: "A novel approach for the identification of key  regulatory molecules and their pathways for Rheumatoid Arthritis" funded by Department of Science and Technology, New Delhi, Government of India.</p>

<p>• Project Assistant</p>

<p>• Essential Qualification: The minimum essential qualification would be M.Sc/B.Tech. in Bioinformatics/ Computer Science /Biotechnology.</p>

<p>• Salary : Rs. 8,000/month for a period of 3 years</p>

<p>Application in plain paper with following details: Name, Address, Date of Birth and Educational Qualifications and details of research experience with publications if any, may be sent to:</p>

<p>Mr. Sachidanand Singh,<br />Principal Investigator,<br />Department of Bioinformatics, School of Biotechnology and Health Sciences<br />Karunya University,<br />Karunya Nagar, Coimbatore- 641114</p>

<p>Ph.no: 09489677764, 09047654981</p>

<p>E-mail: sachidanand@karunya.edu</p>

<p>http://www.karunya.edu/bioinformatics/people/faculty/</p>

<p>Deadline : 25th August 2013</p>

<p>Advertisement: www.karunya.edu/bioinformatics/Project%20Assistant%20in%20SERB.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/32629/bienko-and-crosetto-labs</guid>
  <pubDate>Fri, 12 May 2017 07:42:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bienko and Crosetto Labs]]></title>
  <description><![CDATA[
<p>We are two groups of scientists doing frontier research in quantitative biology and biomedicine. The Bienko group is interested in exploring the fundamental design principles controlling how DNA is packed in the eukaryotic nucleus and its relation to gene expression regulation. The Crosetto group engineers new molecular methods for single-cell and spatially resolved omic measurements of DNA, RNA, and proteins, with a strong focus on tumor heterogeneity. By sharing ideas and resources, we work synergistically towards a more quantitative understanding of life’s processes in healthy and diseased conditions.</p>

<p>https://bienkocrosettolabs.org/</p>
]]></description>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1466/iscb-asia-2013-translational-bioinformatics-conference</guid>
  <pubDate>Thu, 08 Aug 2013 06:31:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[ISCB-Asia 2013 Translational Bioinformatics Conference]]></title>
  <description><![CDATA[
<p>ISCB-Asia 2013<br />Translational Bioinformatics Conference<br />Seoul, Korea<br />October 2 - 4, 2013</p>

<p>For more information visit: http://www.snubi.org/TBC2013/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/32713/salzberg-lab</guid>
  <pubDate>Mon, 15 May 2017 05:14:01 -0500</pubDate>
  <link></link>
  <title><![CDATA[Salzberg lab]]></title>
  <description><![CDATA[
<p>We are a computational biology lab that develops novel methods for analysis of DNA and RNA sequences. Our research includes software for aligning and assembling RNA-seq data, whole-genome assembly, and microbiome analysis. We work closely with biomedical scientists to apply these methods to current problems arising in a broad spectrum of biological and medical research areas. We’re also part of the Center for Computational Biology, a group of 20+ faculty members and their labs at Johns Hopkins working on computational, statistical, and mathematical methods that can turn massive genomic data sets into biologically and clinically useful information.</p>

<p>https://salzberg-lab.org/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/1467/biopython-cookbook</guid>
	<pubDate>Thu, 08 Aug 2013 06:43:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/1467/biopython-cookbook</link>
	<title><![CDATA[BioPython Cookbook]]></title>
	<description><![CDATA[<p>If you are planning to start learning BioPython ( it does not bite but&nbsp;swallow :P just kidding) then this online cookbook will be really helpful for you.</p><p>http://biopython.org/DIST/docs/tutorial/Tutorial.html</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32730/ncbi-prokaryotic-genome-annotation-pipeline</guid>
	<pubDate>Tue, 16 May 2017 08:56:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32730/ncbi-prokaryotic-genome-annotation-pipeline</link>
	<title><![CDATA[NCBI Prokaryotic Genome Annotation Pipeline]]></title>
	<description><![CDATA[<p>NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids).</p>
<p>Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.</p>
<p>NCBI has developed an automatic prokaryotic genome annotation pipeline that combines&nbsp;<em>ab initio</em>&nbsp;gene prediction algorithms with homology based methods. The first version of NCBI Prokaryotic Genome Automatic Annotation Pipeline (PGAAP;&nbsp;<a href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=pubmed&amp;dopt=Abstract&amp;list_uids=18416670">see Pubmed Article</a>) developed in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume. You can find a more detailed description of the new version of&nbsp;the pipeline in&nbsp;<a href="https://www.ncbi.nlm.nih.gov/books/NBK174280/">NCBI Handbook chapter</a>. NCBI's annotation pipeline depends on several internal databases and is not currently available for download or use outside of the NCBI environment.</p>
<p>https://www.ncbi.nlm.nih.gov/genome/annotation_prok/</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/genome/annotation_prok/" rel="nofollow">https://www.ncbi.nlm.nih.gov/genome/annotation_prok/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1514/list-of-pharmacogenomics-companies-worldwide</guid>
	<pubDate>Fri, 09 Aug 2013 13:24:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1514/list-of-pharmacogenomics-companies-worldwide</link>
	<title><![CDATA[List of pharmacogenomics companies worldwide]]></title>
	<description><![CDATA[<div><div><p>Pharmacogenomics are the most promising area of research. Here is the list of some Pharmacogenomics companies worldwide. Feel free to add more pharmacogenomics companies if not mentioned in here.</p><p>Great Pharmacogenomics companies <br /><a href="http://www.aruplab.com/">www.aruplab.com</a> <br /><a href="http://www.clarientinc.com/">www.clarientinc.com</a> <br /><a href="http://www.cns-hts.com/">www.cns-hts.com</a> <br /><a href="http://www.dnanow.com/">www.dnanow.com</a> <br /><a href="http://www.dnavision.be/">www.dnavision.be</a> <br /><a href="http://www.dnavision.com/">www.dnavision.com</a> <br /><a href="http://www.dxsdiagnostics.com/">www.dxsdiagnostics.com</a> <br /><a href="http://www.entrogen.com/">www.entrogen.com</a> <br /><a href="http://www.exiqon.com/">www.exiqon.com</a> <br /><a href="http://www.gene.com/">www.gene.com</a> <br /><a href="http://www.genomichealth.com/">www.genomichealth.com</a> <br /><a href="http://www.genoptix.com/">www.genoptix.com</a> <br /><a href="http://www.genpathdiagnostics.com/">www.genpathdiagnostics.com</a> <br /><a href="http://www.gentris.com/">www.gentris.com</a> <br /><a href="http://www.immunicon.com/">www.immunicon.com</a> <br /><a href="http://www.ingenuity.com/">www.ingenuity.com</a> <br /><a href="http://www.lab21.com/">www.lab21.com</a> <br /><a href="http://www.labcorp.com/">www.labcorp.com</a> <br /><a href="http://www.lion-ag.de/">www.lion-ag.de</a> <br /><a href="http://www.lynxgen.com/">www.lynxgen.com</a> <br /><a href="http://www.mayoclinic.com/">www.mayoclinic.com</a> <br /><a href="http://www.mesoscale.com/">www.mesoscale.com</a> <br /><a href="http://www.microcide.com/">www.microcide.com</a> <br /><a href="http://www.mitokor.com/">www.mitokor.com </a> <br /><a href="http://www.monarchlifesciences.com/">www.monarchlifesciences.com</a> <br /><a href="http://www.mplnet.com/">www.mplnet.com</a> <br /><a href="http://www.orchidbio.com/">www.orchidbio.com</a> <br /><a href="http://www.pebio.com/">www.pebio.com</a> <br /><a href="http://www.phenomenome.com/">www.phenomenome.com</a> <br /><a href="http://www.phenopath.com/">www.phenopath.com</a> <br /><a href="http://www.ppgx.com/">www.ppgx.com</a> <br /><a href="http://www.prometheuslabs.com/">www.prometheuslabs.com</a> <br /><a href="http://www.protogene.com/">www.protogene.com</a> <br /><a href="http://www.questdiagnostics.com/">www.questdiagnostics.com</a> <br /><a href="http://www.rigelinc.com/">www.rigelinc.com</a> <br /><a href="http://www.rii.com/">www.rii.com</a> <br /><a href="http://www.saladax.com/">www.saladax.com</a> <br /><a href="http://www.tmdlab.com/">www.tmdlab.com</a> <br /><a href="http://www.transgenomic.com/">www.transgenomic.com</a> <br /><a href="http://www.twt.com/">www.twt.com</a> <br /><a href="http://www.uslabs.net/">www.uslabs.net</a> <br /><a href="http://www.variagenics.com/">www.variagenics.com</a> <br /><br />Great Equipment Companies for Genomics <br /><a href="http://www.affymetrix.com/">www.affymetrix.com</a> <br /><a href="http://www.illumina.com/">www.illumina.com</a> <br /><a href="http://www.iontorrent.com/">www.iontorrent.com</a> <br /><a href="http://www.sequenom.com/">www.sequenom.com</a> <br /><a href="http://www.appliedbiosystems.com/">www.appliedbiosystems.com</a> <br /><a href="http://www.454.com/">www.454.com</a> <br /><a href="http://www.appliedbiosystems.com/">www.appliedbiosystems.com</a><br /><br />Genomics in India <br /><a href="http://www.ganitlabs.in/">www.ganitlabs.in</a> <br /><a href="http://www.sandor.co.in/">www.sandor.co.in</a> <br /><a href="http://www.igib.res.in/">www.igib.res.in</a> <br /><a href="http://www.genotypic.co.in/">www.genotypic.co.in</a> <br /><a href="http://www.ocimumbio.com/">www.ocimumbio.com</a> <br /><a href="http://www.abcgenomics.com/">www.abcgenomics.com</a> <br /><a href="http://www.xcelrisgenomics.com/">www.xcelrisgenomics.com</a> <br /><a href="http://www.ayugen.com/">www.ayugen.com</a> <br /><a href="http://www.geneombiotech.com/">www.geneombiotech.com</a> <br /><br /> Large Global Whole Genome Companies <br /><a href="http://www.decode.com/">www.decode.com</a> <br /><a href="http://www.23andme.com/">www.23andme.com</a> <br /><a href="http://www.navigenics.com/">www.navigenics.com</a><br />www.pathway.com<br /><br /> Global companies offering genomics services <br /><a href="http://www.asuragen.com/">www.asuragen.com</a> <br /><a href="http://www.baseclear.com/">www.baseclear.com</a> <br /><a href="http://www.agtcenter.com/">www.agtcenter.com</a> <br /><a href="http://www.ambrygen.com/">www.ambrygen.com</a> <br /><a href="http://www.arosab.com/">www.arosab.com</a> <br /><a href="http://www.agrf.org.au/">www.agrf.org.au</a> <br /><a href="http://www.beckmangenomics.com/">www.beckmangenomics.com</a> <br /><a href="http://www.genomics.cn/">www.genomics.cn</a> <br /><a href="http://www.bsf.a-star.edu.sg/">www.bsf.a-star.edu.sg</a> <br /><a href="http://www.cbm.fvg.it/">www.cbm.fvg.it</a> <br /><a href="http://www.cincinnatichildrens.org/">www.cincinnatichildrens.org</a> <br /><a href="http://www.cofactorgenomics.com/">www.cofactorgenomics.com</a> <br /><a href="http://www.covance.com/">www.covance.com</a> <br /><a href="http://www.dnalandmarks.ca/">www.dnalandmarks.ca</a> <br /><a href="http://www.dnavision.com/">www.dnavision.com</a> <br /><a href="http://www.expressionanalysis.com/">www.expressionanalysis.com</a> <br /><a href="http://www.fasteris.com/">www.fasteris.com</a> <br /><a href="http://www.gatc-biotech.com/">www.gatc-biotech.com</a> <br /><a href="http://www.genesdiffusion.com/">www.genesdiffusion.com</a> <br /><a href="http://www.geneseek.com/">www.geneseek.com</a> <br /><a href="http://www.geneticvisions.com/">www.geneticvisions.com</a> <br /><a href="http://www.geneworks.com.au/">www.geneworks.com.au</a> <br /><a href="http://www.genizon.com/">www.genizon.com</a> <br /><a href="http://www.genoskan.dk/uk">www.genoskan.dk/uk</a> <br /><a href="http://www.gpbio.jp/">www.gpbio.jp</a> <br /><a href="http://www.igatechnology.com/">www.igatechnology.com</a> <br /><a href="http://www.igenixinc.com/">www.igenixinc.com</a> <br /><a href="http://www.auxologico.it/">www.auxologico.it</a> <br /><a href="http://www.lifeandbrain.com/">www.lifeandbrain.com</a> <br /><a href="http://www.macrogen.co.kr/eng">www.macrogen.co.kr/eng</a> <br /><a href="http://www.gqinnovationcenter.com/">www.gqinnovationcenter.com</a> <br /><a href="http://www.mftservices.de/">www.mftservices.de</a> <br /><a href="http://www.ncgr.org/">www.ncgr.org</a> <br /><a href="http://www.ramaciotti.unsw.edu.au/">www.ramaciotti.unsw.edu.au</a> <br /><a href="http://www.rikengenesis.jp/">www.rikengenesis.jp</a> <br /><a href="http://www.sabiosciences.com/">www.SABiosciences.com</a> <br /><a href="http://www.sequensysbio.com/">www.sequensysbio.com</a> <br /><a href="http://www.servicexs.com/">www.servicexs.com</a> <br /><a href="http://www.snp-genetics.com/">www.snp-genetics.com</a> <br /><a href="http://www.takara-bio.com/">www.takara-bio.com</a> <br /><a href="http://www.gen-probe.com/">www.gen-probe.com</a> <br /><a href="http://www.traitgenetics.com/">www.traitgenetics.com</a></p></div></div>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/33794/senior-bioinformatics-software-developer-hyderabad-telangana</guid>
  <pubDate>Mon, 03 Jul 2017 10:10:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Bioinformatics Software Developer, Hyderabad, Telangana]]></title>
  <description><![CDATA[
<p>DuPont Pioneer is the world leader in plant biotechnology area including discovery, development and delivery of elite crop genetics. DuPont Pioneer is aggressively building Big Data and Predictive Analytics capabilities in order to deliver improved services to our customers. We are currently seeking Senior Bioinformatics Software Developer at the DuPont Knowledge Center in Hyderabad, India for our global Data Science and Informatics group. At DuPont Pioneer, you’ll become part of a work environment that nurtures your interests, ignites your passion, creates opportunities to serve and helps you attain success–both personally and professionally. The hiring level will be commensurate with the level of experience. This is a critical position with the potential to make immediate, significant impact on our business.<br />The successful candidate will have an extensive background in computer science and bioinformatics through courses or academic degrees, and proven experience in bioinformatics software development. We are looking for those creative, smart, model driven, agile individuals who enjoy giving their all to tackle diverse software needs.<br />Duties / Responsibilities</p>

<p>Job Qualifications<br />Education and Experience<br />•	Master Degree in Bioinformatics, Computational biology, Scientific Computing or related field <br />•	3-5 years of Post-Master’s experience in Bioinformatics software development <br />•	Proven experience developing high throughput bioinformatics applications<br />Required Competencies<br />•	Strong proven experience in Python programming language in Linux environment<br />•	Proven High Performance computing experience (LSF/SGE/OGE)<br />•	Exposure in code versioning and repository management (GIT/SVN)<br />•	Proven experience in Bioinformatics algorithm development<br />•	Deep understanding in Bioinformatics tools, data types<br />Desired Competencies<br />•	Familiarity working in a scientific computing environment (NumPy, SciPy, Pandas etc.)<br />•	Familiarity working with Cloud technologies (AWS, Azure)<br />•	Ability to demonstrate solid analytical skills and exceptional attention to detail.<br />•	Experience in relational databases and data structures<br />•	Proven experience working with teams using agile software development methodologies and processes<br />•	Familiarity with Service Oriented Architecture (SOA)<br />•	Familiarity with build tools (Jenkins, make, ANT, Maven)<br />•	Exposure to project management tools (JIRA, Confluence, RED MINE, etc.)</p>

<p>More at http://careers.dupont.com/jobsearch/job-details/senior-bioinformatics-software-developer/012939W-01/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/1886/interpretomics</guid>
	<pubDate>Sun, 11 Aug 2013 10:24:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/1886/interpretomics</link>
	<title><![CDATA[InterpretOmics]]></title>
	<description><![CDATA[<p>InterpretOmics, a big data analytics startup that focuses on life sciences, has received angel funding of around Rs 10 crore from a group of investors including Singapore's information technology and shipping company, Amarante.</p><p>http://www.interpretomics.co/</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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