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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/45216?</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44267/free-books-on-machine-learning-and-artificial-intelligent</guid>
	<pubDate>Thu, 16 Mar 2023 00:10:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44267/free-books-on-machine-learning-and-artificial-intelligent</link>
	<title><![CDATA[Free Books on Machine Learning and Artificial Intelligent !]]></title>
	<description><![CDATA[<div><p>An Introduction to Statistical Learning<br />This book provides a broad and less technical treatment of key topics in statistical learning. Each chapter includes an R lab. This book is appropriate for anyone who wishes to use contemporary tools for data analysis.</p><p>https://hastie.su.domains/ISLR2/ISLRv2_website.pdf</p><p>Python Data Science Handbook<br />You&rsquo;ll learn how to use the core libraries essential for working with data in Python: particularly IPython, NumPy, Pandas, Matplotlib, Scikit-Learn, and related packages. This resource is perfect for tackling day-to-day issues such as cleaning, manipulating, and transforming data &mdash; or building machine learning models.</p><p>https://jakevdp.github.io/PythonDataScienceHandbook/</p><p>Dive into Deep Learning<br />Interactive deep learning book with code, math, and discussions. Implemented with PyTorch, NumPy/MXNet, JAX, and TensorFlow. Adopted at 400 universities from 60 countries</p><p>https://d2l.ai/</p><p>Approaching (Almost) Any Machine Learning Problem<br />This book is for people who have some theoretical knowledge of machine learning and deep learning and want to dive into applied machine learning. The book is more oriented towards how and what should you use to solve machine learning and deep learning problems. The book is for you if you are looking for guidance on approaching machine learning problems.</p><p>https://github.com/abhishekkrthakur/approachingalmost/blob/master/AAAMLP.pdf</p></div>]]></description>
	<dc:creator>BioStar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44770/nvidia-and-arc-institute-unveil-evo-2-a-breakthrough-ai-for-dna-design</guid>
	<pubDate>Fri, 21 Feb 2025 10:39:47 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44770/nvidia-and-arc-institute-unveil-evo-2-a-breakthrough-ai-for-dna-design</link>
	<title><![CDATA[NVIDIA and Arc Institute Unveil Evo 2: A Breakthrough AI for DNA Design]]></title>
	<description><![CDATA[<p>NVIDIA and the Arc Institute have introduced <strong style="font-size: 12.8px;">Evo 2</strong>, a groundbreaking AI model designed to <strong style="font-size: 12.8px;">understand, predict, and generate DNA sequences</strong>. This marks a major advancement in computational biology, offering scientists an unprecedented tool to decode the genetic blueprint of life and even design entirely new biological systems.</p><h3><strong>The Power of Evo 2: AI Meets DNA</strong></h3><p>Evo 2 is <strong>the largest AI model for biology ever created</strong>, trained on an astonishing <strong>9.3 trillion DNA "letters"</strong> (nucleotides) carefully selected from genomes spanning the entire tree of life. This massive dataset ensures that Evo 2 can recognize patterns and relationships in genetic sequences at an unparalleled scale.</p><p>For the first time, scientists can <strong>design DNA with AI</strong>, moving beyond simple sequence analysis to active DNA generation. Evo 2 enables researchers to <strong>predict, modify, and even create entire genetic sequences</strong>, opening new possibilities in medicine, agriculture, and synthetic biology.</p><h3><strong>Decoding the Dark Genome</strong></h3><p>One of the biggest challenges in genetics is understanding the <strong>non-coding regions</strong> of DNA&mdash;vast stretches of the genome that do not code for proteins but play crucial roles in regulating gene expression. These regions control when and how genes are activated, influencing everything from development to disease.</p><p>Evo 2 is designed to <strong>decode these non-coding elements</strong>, helping researchers uncover their functions and use this knowledge to develop gene-based therapies, synthetic life forms, and precision agriculture solutions.</p><h3><strong>From Reading DNA to Writing It</strong></h3><p>To put Evo 2&rsquo;s impact into perspective:</p><ul>
<li><strong>Previous AI models could "read" DNA</strong> like a book, analyzing genetic sequences and identifying patterns.</li>
<li><strong>Evo 2 can "write" entirely new DNA</strong>, designing functional genes, chromosomes, and even full genomes from scratch.</li>
</ul><p>This means scientists can now <strong>engineer biological systems with AI</strong>, designing new proteins, metabolic pathways, and genetic circuits to address real-world challenges.</p><h3><strong>A Step Toward Generative Biology</strong></h3><p>The Arc Institute describes Evo 2 as a major step toward <strong>"generative biology"</strong>&mdash;a revolutionary approach where AI is used to create <strong>novel biological structures</strong> rather than just analyzing existing ones. This could lead to breakthroughs such as:</p><ul>
<li><strong>New medicines</strong>: AI-generated enzymes and proteins tailored for targeted therapies.</li>
<li><strong>Disease-resistant crops</strong>: Genetically optimized plants for higher yield and climate resilience.</li>
<li><strong>Synthetic organisms</strong>: Custom-designed microbes for bioremediation, biofuel production, and industrial applications.</li>
</ul><h3><strong>An Open-Source Revolution</strong></h3><p>Unlike many proprietary AI models, <strong>Evo 2 is open source</strong>, making its capabilities accessible to researchers worldwide. This democratization of AI-driven biology means that scientists from different disciplines can <strong>collaborate, experiment, and innovate</strong>, accelerating discoveries in genetic engineering and synthetic biology.</p><p>With Evo 2, the boundaries of what&rsquo;s possible in <strong>DNA design, genetic engineering, and biological innovation</strong> are being redrawn. The future of life sciences is no longer just about understanding life&rsquo;s code&mdash;it&rsquo;s about writing it.</p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43227/project-associate-i-project-associate-ii-senior-project-associate-igib</guid>
  <pubDate>Thu, 05 Aug 2021 16:11:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB]]></title>
  <description><![CDATA[
<p>Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application. </p>

<p>Project Scientist-I <br />Experimental / Computation analysis experience in highthroughput genomics/ clinical application.</p>

<p>Project Manager <br />Experience in handling large biological projects involving high-throughput genomics/ clinical application.</p>

<p>Scientific Administrative Assistant <br />Lab Work. </p>

<p>More at https://vinodscaria.genomes.in/positionsopen</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/4882/detect-the-sequence-pattern-and-its-location-in-fasta-file-with-match-and-mismatches-information</guid>
	<pubDate>Thu, 26 Sep 2013 15:02:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/4882/detect-the-sequence-pattern-and-its-location-in-fasta-file-with-match-and-mismatches-information</link>
	<title><![CDATA[Detect the sequence pattern and its location in fasta file with match and mismatches information.]]></title>
	<description><![CDATA[<p>This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line ..</p><p>To run:</p><p>perl centro.pl</p>]]></description>
	<dc:creator>Jit</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/4882" length="3596" type="text/x-perl" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43362/machine-learning-for-genomics</guid>
	<pubDate>Thu, 09 Sep 2021 11:26:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43362/machine-learning-for-genomics</link>
	<title><![CDATA[Machine Learning for Genomics]]></title>
	<description><![CDATA[<h3>Module 1: Statistics for genomics (2-8 August 2021)</h3>
<ul>
<li>A simple intro to statistical distributions</li>
<li>hypothesis testing</li>
<li>linear models.</li>
</ul>
<p>reading:&nbsp;<a href="http://compgenomr.github.io/book/stats.html">http://compgenomr.github.io/book/stats.html</a></p>
<p>slides:&nbsp;<a href="https://github.com/BIMSBbioinfo/compgen2021/tree/main/week1/compgen2021_stats.pdf">https://github.com/BIMSBbioinfo/compgen2021/tree/main/week1/compgen2021_stats.pdf</a></p>
<p>exercises+code:&nbsp;<a href="https://github.com/BIMSBbioinfo/compgen2021/tree/main/week1/">https://github.com/BIMSBbioinfo/compgen2021/tree/main/week1/</a></p>
<h3><a href="https://github.com/BIMSBbioinfo/compgen2021#module-2-unsupervised-learning-for-genomics-9-15-august-2021"></a>Module 2: Unsupervised learning for genomics (9-15 August 2021)</h3>
<ul>
<li>Understanding basic intuition behind machine learning approaches.</li>
<li>Using unsupervised learning to cluster and visualise data points</li>
<li>Dimension reduction techniques for visualisation and as input to clustering methods</li>
</ul>
<p>reading:&nbsp;<a href="http://compgenomr.github.io/book/unsupervisedLearning.html">http://compgenomr.github.io/book/unsupervisedLearning.html</a></p>
<p>slides:&nbsp;<a href="https://github.com/BIMSBbioinfo/compgen2021/tree/main/week2/compgen2021_unsupervisedLearning.pdf">https://github.com/BIMSBbioinfo/compgen2021/tree/main/week2/compgen2021_unsupervisedLearning.pdf</a></p>
<p>exercises+code:&nbsp;<a href="https://github.com/BIMSBbioinfo/compgen2021/tree/main/week2/">https://github.com/BIMSBbioinfo/compgen2021/tree/main/week2/</a></p>
<h3><a href="https://github.com/BIMSBbioinfo/compgen2021#module-3-supervised-learning-for-genomics-16-22-august-2021"></a>Module 3: Supervised learning for genomics (16-22 August 2021)</h3>
<ul>
<li>Understanding and using supervised learning methods for predictive purposes</li>
<li>How to measure prediction performance</li>
<li>Understand and use cross-validation and related concepts</li>
</ul>
<p>reading:&nbsp;<a href="http://compgenomr.github.io/book/supervisedLearning.html">http://compgenomr.github.io/book/supervisedLearning.html</a></p>
<p>slides:&nbsp;<a href="https://github.com/BIMSBbioinfo/compgen2021/tree/main/week3/compgen2021_supervisedLearning.pdf">https://github.com/BIMSBbioinfo/compgen2021/tree/main/week3/compgen2021_supervisedLearning.pdf</a></p>
<p>exercises+code:&nbsp;<a href="https://github.com/BIMSBbioinfo/compgen2021/tree/main/week3/">https://github.com/BIMSBbioinfo/compgen2021/tree/main/week3/</a></p>
<p>https://github.com/BIMSBbioinfo/compgen2021</p><p>Address of the bookmark: <a href="https://github.com/BIMSBbioinfo/compgen2021" rel="nofollow">https://github.com/BIMSBbioinfo/compgen2021</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39939/automatic-predictive-model-constructor-apmc</guid>
	<pubDate>Mon, 16 Sep 2019 09:43:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39939/automatic-predictive-model-constructor-apmc</link>
	<title><![CDATA[Automatic Predictive Model Constructor - APMC]]></title>
	<description><![CDATA[<div><div><div><div><div><div><div><div><div><div><div><div><div><div><div>I would like to invite everyone interested in the subject of machine learning in life science, to test <strong>APMC</strong> module,</div><div>it`s a fully automatic tool (created by students) to simply create and develop supervised machine learning models</div><div>for classification and regression purposes. Links to tool, instruction and documentation bellow:</div><div><span style="font-size: 12.8px;"></span></div><ul>
<li><span style="font-size: 12.8px;">APMC:&nbsp;</span><a href="https://gene-calc.pl/apmc?fbclid=IwAR1j51l7qXsL3BuMPb-P5yQhwkmDCiVdoP-qodeCrbu2DbWtxtihRJ0n9-g" target="_blank">https://gene-calc.pl/apmc</a></li>
<li><span>How to use:&nbsp;</span><a href="https://l.facebook.com/l.php?u=https%3A%2F%2Fgene-calc.pl%2Fapmc%2Fhow-to-use%3Ffbclid%3DIwAR3tCwJiegeuVn_ZZ-YPD7lB7UrqGWaab_zItU30MvFKZiuheSEiGUxyZ9Y&amp;h=AT1x8z09NwNUiLjTgNw8Vzg9OLsEjnpHESvjOescfLF-mzjMMqTBnkh5AqHRkOaXwjVHetdQtQO7mgstwke6ivUz-hzT-ifo5TrMBuMm8XMTmvhz7nyDdKmQZ38yyXW942J_47Oj5YxYxWaMDreugIU2ytT2yvxvgKi-FgNo4N7mvYoj_1A5eCuNxHWuGA3voYn0GAWSSR96ZK4gsj3pvqBcCK9Zi2Fo8IoBNK9JZIbtnV9fdvZLMEUryCoWEceZkMX-76jmGinOXss5L3AGp_6oSUr_aFus73B4q5PXMbKubUoU4inr-0kVoO0werx5YNPWdgXtpiyD6TKXQIhI6lDtyi2jx645A5CKqW-nARPqKwa-Iwtt-KGoNyHvcSnhvfLPK9n4Lhs8W6PK9ZeobOqHwm4y1C1my-N4dvlmvGBWTgSj_E31e0GIhYxvI9Uk3nREVnMw3lfD20BTmwL-wfhSidm8Lue_Akn1Flpfcl0jP1DBpkcwJ3OMxDVA82bL4lcsGmyLGedXjrpKAiVGF3R_e57r9EeI5bWyrbYZGTaHJdOGJBQSvplDir_AfH9Pr5NSRVZOStr13e6XxUIXhCiR58Qua_yuQOsNYBKGN5OP7XAL0DeFIKmI" target="_blank">https://gene-calc.pl/apmc/how-to-use</a></li>
<li><span>Documentation:&nbsp;</span><a href="https://gene-calc.pl/apmc/documentation?fbclid=IwAR1_2agQ8vnqDw0DudUI5UJq3_ip0EFwWR3zyccOynaDlbzkfFmYXnPtFXI" target="_blank">https://gene-calc.pl/apmc/documentation</a></li>
</ul></div></div></div></div></div></div></div></div></div></div></div></div></div></div>]]></description>
	<dc:creator>Jan Bińkowski</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35078/suisse-life-science-group</guid>
	<pubDate>Sun, 07 Jan 2018 14:42:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35078/suisse-life-science-group</link>
	<title><![CDATA[Suisse Life Science Group]]></title>
	<description><![CDATA[<p><span>THE WORLD&rsquo;S MOST UNIQUE HEALTH &amp; WELLNESS SERVICE:&nbsp;</span></p>
<p><span> AI and science working together to manage the root causes of your aging&nbsp;</span></p>
<p><span> Personalized plan built from your biomarkers and devices </span></p>
<p><span>Biologically-active treatments (cellular health). No drugs.</span></p>
<p><span style="text-decoration: underline;">Source is Linkedln link</span> :</p>
<p>https://www.linkedin.com/company/5143768/</p><p>Address of the bookmark: <a href="https://suisselifescience.com/" rel="nofollow">https://suisselifescience.com/</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/43008/list-of-useful-machine-ai-learning-resources</guid>
	<pubDate>Tue, 30 Mar 2021 08:56:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/43008/list-of-useful-machine-ai-learning-resources</link>
	<title><![CDATA[List of useful machine / ai learning resources !]]></title>
	<description><![CDATA[<p>ML&nbsp;cheatsheet !</p><p>https://github.com/remicnrd/ml_cheatsheet</p><p>Visual AI / ML</p><p>https://setosa.io/ev/</p><p>Simple and efficient tools for predictive data analysis</p><p><span>https://scikit-learn.org/stable/</span></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38233/kubeflow-an-open-community-driven-project-to-make-it-easy-to-deploy-and-manage-an-ml-stack-on-kubernetes</guid>
	<pubDate>Fri, 16 Nov 2018 15:05:14 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38233/kubeflow-an-open-community-driven-project-to-make-it-easy-to-deploy-and-manage-an-ml-stack-on-kubernetes</link>
	<title><![CDATA[Kubeflow: an open, community driven project to make it easy to deploy and manage an ML stack on Kubernetes]]></title>
	<description><![CDATA[<p><span>The Kubeflow project is dedicated to making deployments of machine learning (ML) workflows on Kubernetes simple, portable and scalable. Our goal is not to recreate other services, but to provide a straightforward way to deploy best-of-breed open-source systems for ML to diverse infrastructures. Anywhere you are running Kubernetes, you should be able to run Kubeflow.</span></p><p>Address of the bookmark: <a href="https://www.kubeflow.org/" rel="nofollow">https://www.kubeflow.org/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

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