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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/45349?offset=1450</link>
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	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35252/hgt-finder-a-new-tool-for-horizontal-gene-transfer-finding-and-application-to-aspergillus-genomes</guid>
	<pubDate>Wed, 17 Jan 2018 05:03:19 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35252/hgt-finder-a-new-tool-for-horizontal-gene-transfer-finding-and-application-to-aspergillus-genomes</link>
	<title><![CDATA[HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes]]></title>
	<description><![CDATA[<p><span>HGT-Finder: </span></p>
<p><span>(i) can be used for HGT detection in both prokaryotes and eukaryotes, </span></p>
<p><span>(ii) can report a statistical&nbsp;</span><em>P</em><span>&nbsp;value for each gene to indicate how likely it is to be horizontally transferred, and </span></p>
<p><span>(iii) is fully automated (requires minimal human intervention), as well as very easy to install and run.&nbsp;</span></p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626719/" rel="nofollow">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626719/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24042/research-associate-bioinformatician-university-of-bristol</guid>
  <pubDate>Wed, 26 Aug 2015 05:46:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatician @ University of Bristol]]></title>
  <description><![CDATA[
<p>This 0.5 fte role will have specific responsibility for the bioinformatic side of a Health Innovation Challenged Fund (HICF) research project investigating the application of Next Generation Sequencing (NGS) technologies to the analysis of Minimal Residual Disease (MRD) in childhood Acute Lymphoblastic Leukaemia (ALL). The successful candidate will be responsible for designing and implementing an analysis pipeline primarily to fit with the clinical need, but with the capacity to answer innovative research questions.</p>

<p>For informal enquiries please contact Anne Walsh via email: anne.walsh@bristol.ac.uk.</p>

<p>Apply at http://www.bris.ac.uk/jobs/find/details.html?nPostingID=3639&amp;nPostingTargetID=13346&amp;option=28&amp;sort=DESC&amp;respnr=1&amp;ID=Q50FK026203F3VBQBV7V77V83&amp;JobNum=ACAD101624&amp;Resultsperpage=10&amp;lg=UK&amp;mask=uobext</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39380/mgert-mobile-genetic-elements-retrieving-tool</guid>
	<pubDate>Sat, 18 May 2019 08:58:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39380/mgert-mobile-genetic-elements-retrieving-tool</link>
	<title><![CDATA[MGERT: Mobile Genetic Elements Retrieving Tool]]></title>
	<description><![CDATA[<p><em>MGERT</em><span>&nbsp;is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies.&nbsp;</span><em>MGERT</em><span>&nbsp;utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.</span></p><p>Address of the bookmark: <a href="https://github.com/andrewgull/MGERT" rel="nofollow">https://github.com/andrewgull/MGERT</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23283/ra-bioinformatics-at-iisr</guid>
  <pubDate>Mon, 13 Jul 2015 02:12:10 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at IISR]]></title>
  <description><![CDATA[
<p>Bioinformatics Research Associate at Indian Institute of Spice Research</p>

<p>Pay Scale: Rs. 40,000/-per month +HRA (as admissible) for Ph.D. holders and Rs. 38,000/-p.m. + HRA (as admissible) for Master degree holder</p>

<p>Qualifications: a)Essential :</p>

<p>Ph.D.in Biotechnology/ Molecular B iology/ Genetics &amp; Plant Breeding/ Bioinformatics ( Should have the degree in life sciences at gra duate level) OR Post - Graduation in Biotechnology/ Molecular Biology/ Bioinformati cs/Genetics &amp; Plant Breeding</p>

<p>or equivalent with at least two years of research experience and 60% marks. ( should have a degree in life sciences at graduate level)</p>

<p>b) Desirable :</p>

<p>1. Working experience in plant molecular biology</p>

<p>2. Knowledge of Computational Genomics/Proteomics/ Bioinformatics</p>

<p>3. Working knowledge on Computer programming</p>

<p>Walk-in Interview will be held at The Indian Institute of Spices Research, Marikunnu P.O., Kozikode-673012, Kerala on 28/7/2015 at 10.00 AM.</p>

<p>For more details: http://www.spices.res.in/pdf/Mining%20and%20Validation%20Website.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44487/r-package-for-pca-analysis</guid>
	<pubDate>Sun, 24 Mar 2024 20:06:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44487/r-package-for-pca-analysis</link>
	<title><![CDATA[R Package for PCA Analysis]]></title>
	<description><![CDATA[<p><span>An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on GitHub:&nbsp;https://github.com/Devashish13/PopulationStructure</span></p><p>Address of the bookmark: <a href="https://rpubs.com/Devashish13/PCAGenomics" rel="nofollow">https://rpubs.com/Devashish13/PCAGenomics</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23403/bioinformatics-project-assistant-at-vector-control-research-centre-vcrc-puducherry</guid>
  <pubDate>Sun, 19 Jul 2015 19:22:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Project Assistant at Vector Control Research Centre (VCRC), Puducherry.]]></title>
  <description><![CDATA[
<p>Applications are invited upto 27.07.2015 for filling up of one post of Project Assistant (UNRESERVED) to work under ICMR funded Non-Institutional adhoc project entitled “Biomedical Informatics centre’s of ICMR” at Vector Control Research Centre (VCRC), Puducherry.</p>

<p>Desirable qualification: M.Sc (Life Sciences) with Bioinformatics knowledge and hands on molecular biology tools.</p>

<p>Age: Not exceeding 30 years on the last date of receipt of application</p>

<p>Job work: Molecular modelling studies, Database curation, Metagenomic studies on Dengue virus</p>

<p>Advertisement: http://vcrc.res.in/writereaddata/BIPrj15.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/45270/when-dna-data-tells-the-wrong-story-crossfit-assist-to-resolve</guid>
	<pubDate>Fri, 04 Sep 2026 03:41:38 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/45270/when-dna-data-tells-the-wrong-story-crossfit-assist-to-resolve</link>
	<title><![CDATA[When DNA Data Tells the Wrong Story - CrossFit assist to resolve !]]></title>
	<description><![CDATA[<p>Imagine comparing humans and chimpanzees to discover which genes make us different. You have millions of RNA-sequencing reads&mdash;but there is a catch: the computer may align these reads more easily to one species' genome than the other.</p><p>Suddenly, a technical error can look like a biological difference.</p><p>This is the problem Kenneth A. Barr and Yoav Gilad tackle with CrossFilt, a new computational tool introduced in Genome Biology journal.</p><p>CrossFilt acts like a careful referee. It keeps only sequencing reads that can be reliably compared across species, filtering out reads that could create alignment bias.</p><p>When tested on human, chimpanzee, and rhesus macaque data, CrossFilt reduced false discoveries and produced more reliable cross-species comparisons.</p><p>The message is simple: before asking what makes species different, we need to make sure our methods aren't creating those differences.</p><p>In genomics, sometimes the most important discovery is finding&mdash;and removing&mdash;the bias hiding in the data.</p><p>Read more at&nbsp;https://link.springer.com/article/10.1186/s13059-026-04082-2?</p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23496/bioinformatics-scientist-at-nin</guid>
  <pubDate>Sat, 25 Jul 2015 22:07:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Scientist at NIN]]></title>
  <description><![CDATA[
<p>No.NIN/PERS/Sch-88/2015-16/</p>

<p>WALK-IN-INTERVIEW (EMPLOYMENT NOTIFICATION)</p>

<p>Eligible candidates are invited to apply for the following post on the ad hoc research project entitled “Biomedical Informatics Centre’s of ICMR” - funded by ICMR at this Institute. The Applications will be received from the individuals on 31st July, 2015 between 9:30 A.M. and 10:30 A.M. at Conference Hall, NIN, Tarnaka, Hyderabad.</p>

<p>Late applications will not be entertained after 10:30 A.M. at any circumstances.</p>

<p>The Candidates may download the Application Form from NIN website: www.ninindia.org</p>

<p>Selection Procedure: Written test and Interview will be conducted to the eligible candidates, if the large numbers of candidates are found to be eligible in the screening. If the lesser number of candidates are found to be eligible in the screening, interview will be conducted only to the short listed candidates for final selection. The names of the shortlisted candidates will be displayed on the Notice Board, which is kept in front of the Conference Hall by 11:30 A.M.</p>

<p>Date of Written Test / Interview: 31st July, 2015. The essential qualification, experience, consolidated Pay and service tenure are as under:</p>

<p>1. Scientist-II (no. of vacancies -1 No.) (UR)</p>

<p>Essential Qualifications :</p>

<p>(i) First Class Master’s Degree in Bio-informatics/ Life Sciences form a recognized University with 4 years R&amp;D experience in the biomedical informatics subject. (or)</p>

<p>(ii) 2nd Class M.Sc./ M.Tech. in Bio-informatics + Ph.D. in the relevant subject from recognized University with 4 years research experience in the biomedical informatics subject. </p>

<p>Age limit : Not exceeding 40 years. Cons.</p>

<p>Pay : Rs.45,954/- p.m. plus 30% HRA p.m. (fixed) without any other allowances.</p>

<p>Tenure : Initially upto 29th February, 2016 and extendable for three more years based on the performance of the candidate and funds position.</p>

<p>Note: Age relaxation will be given to the deserving Candidates. The short listed candidates should bring all original certificates of educational qualification (from SSC onwards), experience, SC/ST/OBC Community Certificate / PH Certificates along with a pass port size photograph and set of Photo copies duly attested for attending the Written Test/Interview. The persons belonging to Other Backward Category should bring the latest O.B.C. (Non-creamy layer) Certificate issued by the respective Tahsildar/ MRO specifically issued for the purpose of applying for Central Government Post. No TA/DA will be paid for attending the Written Test /Interview.</p>

<p>GENERAL CONDITIONS: The conditions of employment will be the same as are for the project staff on contract basis. The candidates have no right to claim for any regular employment at this Institute. The Director In-charge &amp; Appointing Authority has the right to accept / reject any application without assigning any reason/s and no correspondence in this matter will be entertained. </p>

<p>More at http://ninindia.org/31July2015.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35420/telomerehunter</guid>
	<pubDate>Fri, 02 Feb 2018 04:23:59 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35420/telomerehunter</link>
	<title><![CDATA[TelomereHunter]]></title>
	<description><![CDATA[<p><span>TelomereHunter is a tool for estimating telomere content from human whole-genome sequencing data. It is designed to take BAM files from a tumor and a matching control sample as input. However, it is also possible to run TelomereHunter with one input file. TelomereHunter extracts and sorts telomeric reads from the input sample(s). For the estimation of telomere content, GC biases are taken into account. Finally, the results of TelomereHunter are visualized in several diagrams.</span><br><br><span>TelomereHunter is available for download at the following address:&nbsp;</span><a href="https://pypi.python.org/pypi/telomerehunter/" target="_blank">https://pypi.python.org/pypi/telomerehunter/</a></p><p>Address of the bookmark: <a href="http://www.dkfz.de/en/applied-bioinformatics/telomerehunter/telomerehunter.html" rel="nofollow">http://www.dkfz.de/en/applied-bioinformatics/telomerehunter/telomerehunter.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/23680/five-key-traits-to-seek-out-in-potential-bioinformatics-candidates</guid>
	<pubDate>Mon, 10 Aug 2015 12:53:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/23680/five-key-traits-to-seek-out-in-potential-bioinformatics-candidates</link>
	<title><![CDATA[Five key traits to seek out in potential bioinformatics candidates !!!]]></title>
	<description><![CDATA[<p>Genomics and proteomics data are being collected in bulk, but mostly, traditional biologist don&rsquo;t know what to do with it. Perhaps this is the reason why (not only this!!! ) computational biologist/bioinformatics scientists are hot commodities in the research world.</p><p>In fact, there are huge demands for expert biological data analyst. It&rsquo;s a fairly new &nbsp;(not exactly) hot area, these bioinformatician are invaluable because they know and understand the significance of biological data for your research and how you can use it for better understanding of biological problems.</p><p>The bioinformatics can discover biological patterns and stories in genomic and proteomics data. They can develop the pipeline needed to properly collect, store and analyse it.</p><p><img src="http://bioinformaticsonline.com/mod/photo/hire.gif" alt="image" style="border: 0px;"></p><p>Once your research group is ready to make a larger investment and hire a bioinformatician to gain a competitive edge, there are several key traits to seek out in potential candidates. The best bioinformatician are:</p><p>1. Highly Skilled - programming skills, experience with the biological software and tools.</p><p>The biological data won&rsquo;t illuminate much if the scientist analysing it doesn&rsquo;t possess practical programming skills, experience with the biological software and tools and a thorough understanding of basic biological stuff. A solid background in mathematics and statistics is also an indispensable trait.</p><p>2. Insight - Real vision, robust understanding and deep insight.</p><p>In order to hire the best bioinformatics and computational biologist scientist for your needs, it is always recommended and mostly practiced by the recruiters, to ask each contender to write and develop a sample script/presentation based on a specific set of data you provide. Then, explore the approaches used to deal with data provided and pick up those candidates who convey real vision, robust understanding and deep insight.</p><p>3. Energetic &ndash; Curiosity to explore</p><p>Mostly natural curiosity and enthusiasm for solving big biological problems coupled with an ability to transform data into a scientific stories may place one candidate above the rest. In addition to achieve that, the bioinformatician should be agile enough to quickly modify their methods to suit changes within a particular research.</p><p>4. Researcher &ndash; Publications</p><p>Look for someone who has a keen sense and understanding of concern biological problems. You can judge it by looking at previously published papers and data. It is always recommended to have a look at GitHub and other repository for codes written by her/him.</p><p>5. Impressive communicator - Insight that can&rsquo;t be expressed is worthless.</p><p>Good bioinformatics scientists are able to uncover biological patterns and are willing to explain those patterns in clear and helpful ways through thoughtful and open communication. In other words, they should must have good scientific writing skills. A computational biologis/bioinformatician&nbsp; should know how to present the data and tell a scientific story through numbers/images.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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