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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/45349?offset=890</link>
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	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34678/svfinder-tool-for-detecting-genomic-rearrangement-form-dna-seq-data</guid>
	<pubDate>Thu, 14 Dec 2017 15:51:40 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34678/svfinder-tool-for-detecting-genomic-rearrangement-form-dna-seq-data</link>
	<title><![CDATA[SVfinder: Tool for detecting genomic rearrangement form DNA-seq data]]></title>
	<description><![CDATA[<p><span>SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.</span></p><p>Address of the bookmark: <a href="https://github.com/cauyrd/SVfinder" rel="nofollow">https://github.com/cauyrd/SVfinder</a></p>]]></description>
	<dc:creator>Robert M Willioms</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38304/lordfast-sensitive-and-fast-alignment-search-tool-for-long-noisy-read-sequencing-data</guid>
	<pubDate>Tue, 27 Nov 2018 04:43:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38304/lordfast-sensitive-and-fast-alignment-search-tool-for-long-noisy-read-sequencing-data</link>
	<title><![CDATA[lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data]]></title>
	<description><![CDATA[<p><span>lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads and application.</span></p>
<p>lordFAST, a novel long-read mapper that is specifically designed to align reads generated by PacBio and potentially other SMS technologies to a reference. lordFAST not only has higher sensitivity than the available alternatives, it is also among the fastest and has a very low memory footprint.</p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://github.com/vpc-ccg/lordfast" rel="nofollow">https://github.com/vpc-ccg/lordfast</a></p>]]></description>
	<dc:creator>BioJoker</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23278/research-associate-project-fellow-biological-sciences-at-igib</guid>
  <pubDate>Sun, 12 Jul 2015 07:57:27 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate, Project Fellow (Biological Sciences) at IGIB]]></title>
  <description><![CDATA[
<p>Research Associate, Project Fellow (Biological Sciences)<br />Institute of Genomics &amp; Integrative Biology (IGIB) - New Delhi, Delhi<br />Pay Scale: Rs. 22,000/- + 30 % HRA per month<br />Educational Requirements: PhD in any branch of Biological Sciences with specialization in Bioinformatics with at least one research paper in Science Citation Indexed (SCI) journal<br />Desired Skills: Knowledge of molecular dynamics simulations<br />Details will be available at: http://www.igib.res.in/sites/default/files/24July2015.pdf</p>

<p>Project Fellow (Biological Sciences) Pay Scale: Rs. 16,000/- + 30 % HRA per month<br />Educational Requirements: M.Sc./B.Tech in life sciences/Biological sciences with at least 55 % marks<br />Experience Requirements: Research experience.<br />Details will be available at: http://www.igib.res.in/sites/default/files/24July2015.pdf</p>

<p>No of Post: 01<br />How To Apply: 1. Please fill up the proforma by clicking on the following link HR Online Form. 2. Candidate cannot apply for more than two posts. Last date of receiving application is 12-07-2015. No application would be entertained with “result awaited” status or after due date. List of shortlisted candidates will be put up on CSIR-IGIB website. No TA/DA will be paid to the candidates to attend the interview. The engagement shall be as per guidelines of CSIR/Funding agency. Candidates will have an option to give reply in Hindi. Note: The shortlisted candidates, have to report at 09:00 AM at Mall Road Campus, Delhi – 110007 on the day of interview along with any Photo ID card, (without photo ID card interview will not be conducted). 3 copies of updated signed C. V. (clearly mentioning Date of Birth and Highest Qualification with percentage), Dissertation (if any), PhD thesis (if any) and original certificates/Self attested photocopies for verification.<br />Detail of Interview: 24 July, 2015 at 10:30 AM<br />Age Limit: 28 Years</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42204/g-nest-the-gene-neighborhood-scoring-tool</guid>
	<pubDate>Fri, 25 Sep 2020 20:09:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42204/g-nest-the-gene-neighborhood-scoring-tool</link>
	<title><![CDATA[G-NEST: The Gene NEighborhood Scoring Tool]]></title>
	<description><![CDATA[<p><span>The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.</span></p><p>Address of the bookmark: <a href="https://github.com/dglemay/G-NEST" rel="nofollow">https://github.com/dglemay/G-NEST</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23378/ra-bioinformatics-at-bharathidasan-university</guid>
  <pubDate>Fri, 17 Jul 2015 19:40:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Bharathidasan University]]></title>
  <description><![CDATA[
<p>Applications are invited from individuals who have high motivation to do research for the DBT sponsored project o n “Establishment of National Repository for Microalgae &amp; Cyanobacteria” funded by Department of Biotechnology, Govt. of India under the supervision of Dr. N. Thajuddin, Principal Investigator, Department of Microbiology, Bharathidasan University, Tiruchirappalli- 620 024.</p>

<p>1. Research Associate – 1 No.</p>

<p>Rs. 36,000/38,000/40,000 per month for I, II and III year + 20% HRA</p>

<p>Essential : Doctoral degree in relevant subject from recognized University/ Institutes</p>

<p>Desirable: Research experience in molecular biology and bioinformatics.</p>

<p>Interested candidates can send their complete CV in plain paper with a passport size photograph, with details of marks secured in all subjects from plus two stage (with proof, full postal address, sex, date of birth, community etc., along with additional qualification or experiences and two address of references whom could be contacted.</p>

<p>DEPARTMENT OF MICROBIOLOGY SCHOOL OF LIFE SCIENCES UNIVERSITY Dr. N. THAJUDDIN Professor &amp; Head Dean, Faculty of Science, Technology &amp; Engineering Tiruchirappalli – 620 024, India, Phone: +91 431 2407082; Mobile +91 098423 79719; E-mail: nthaju2002@yahoo.com</p>

<p>Application should reach the Principal Investigator on or before 5.8.2015 by Speed post/Couriers/Email (nthaju2002@yahoo.com), with subject printed as “Application for Research Associate /Technical Assistant /Lab attendant” in the envelop. Qualifying candidates will be short listed and communicated with date of interview. No TA and DA will be given for attending the interview. Address for Communication Dr.N.Thajuddin Principal Investigator Department of Microbiology Bharathidasan University Tiruchirappalli – 620 024, Tamil Nadu.</p>

<p>Advertisement: www.bdu.ac.in/adv/microbiology_advt.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44659/figeno-tool-for-plotting-sequencing-data-along-genomic-coordinates</guid>
	<pubDate>Tue, 17 Sep 2024 02:28:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44659/figeno-tool-for-plotting-sequencing-data-along-genomic-coordinates</link>
	<title><![CDATA[Figeno: Tool for plotting sequencing data along genomic coordinates.]]></title>
	<description><![CDATA[<p><span>Tool for plotting sequencing data along genomic coordinates.</span></p>
<div>
<pre><code>FIGENO is a
  FIGure
    GENerator
for GENOmics</code></pre>
</div>
<p dir="auto">With figeno, you can plot various types of sequencing data along genomic coordinates. Video overview:&nbsp;<a href="https://www.youtube.com/watch?v=h1cBeXoSYTA">https://www.youtube.com/watch?v=h1cBeXoSYTA</a>.</p>
<p dir="auto"><a href="https://github.com/CompEpigen/figeno/blob/main/docs/content/images/figeno.png" target="_blank"><img src="https://github.com/CompEpigen/figeno/raw/main/docs/content/images/figeno.png" alt="figeno" style="border: 0px;"></a></p><p>Address of the bookmark: <a href="https://github.com/CompEpigen/figeno" rel="nofollow">https://github.com/CompEpigen/figeno</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23428/icgeb-bioinformatics-research-associate-vacancy</guid>
  <pubDate>Thu, 23 Jul 2015 19:45:16 -0500</pubDate>
  <link></link>
  <title><![CDATA[ICGEB Bioinformatics Research Associate Vacancy]]></title>
  <description><![CDATA[
<p>Junior Research Fellow (JRF) / Postdoc positions in Cell and Structural biology at ICGEB, New Delhi with Amit Sharma</p>

<p>Research positions are open starting 15th August 2015.</p>

<p>Projects are specifically for protein structure analysis. Projects also involve drug binding studies both computationally and experimentally.</p>

<p>CSIR/SPM/INSPIRE/DBT/UGC JRF/post-doc fellowships are essential for applications.</p>

<p>Email curriculum vitae to sb.icgeb@gmail.com by 14 August 2015</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42963/davi-deep-learning-based-tool-for-alignment-and-single-nucleotide-variant-identification</guid>
	<pubDate>Tue, 16 Mar 2021 05:41:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42963/davi-deep-learning-based-tool-for-alignment-and-single-nucleotide-variant-identification</link>
	<title><![CDATA[DAVI: Deep learning-based tool for alignment and single nucleotide variant identification]]></title>
	<description><![CDATA[<p>DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We further demonstrate that while existing tools are based on data generated from a specific sequencing technology, the models proposed in DAVI are generic and can be used across different NGS technologies as well as across different species</p>
<p>https://iopscience.iop.org/article/10.1088/2632-2153/ab7e19/pdf</p><p>Address of the bookmark: <a href="https://github.com/gguptaiitd/NEAT" rel="nofollow">https://github.com/gguptaiitd/NEAT</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23578/srf-post-in-nehu-shillong</guid>
  <pubDate>Tue, 04 Aug 2015 03:17:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF post in NEHU, Shillong]]></title>
  <description><![CDATA[
<p>Bioinformatics Centre (DIC)<br />NORTH-EASTERN HILL UNIVERSITY<br />SHILLONG 793022</p>

<p>Applications with complete bio-data from candidates possessing the required qualifications are invited for the posts of JRF (1) and Project Assistant (1) in DBT, GOI-funded research project “Next Generation Sequencing (NGS)- based de novo assembly of expressed transcripts and genome information of Orchids in North-East India” in DBT’s Twinning programme for NE as per DBT sanction order and norms.</p>

<p>(i) JRF(1 no.):</p>

<p>Qualifications: M.Tech/M.Sc in Life Sciences/ Botany/ Zoology/ Biochemistry/ Biotechnology/ Bioinformatics;</p>

<p>Desirable: Aptitude for Bioinformatics and Computer Programming/ Next generation sequencing data analysis</p>

<p>(ii) Project Assistant (1 no.):</p>

<p>Qualifications: Graduation in Science,</p>

<p>Desirable: Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples.</p>

<p>The applications through email bicnehu@gmail.com or post must reach the undersigned within 15 days from the date of publication of this advertisement. The advertised posts are purely temporary for the duration of the project and subject to availability of the funds from DBT. The appointment does not confer any entitlement or right over the posts for absorption in the University service. Prof. Pramod Tandon, PI/Mr. Devendra Kumar Biswal (Co-PI) email: bicnehu@gmail.com</p>

<p>Advertisement: www.nehu.ac.in/Advertisements/BIC_AdvtPV_030815.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33866/perlbrew-admin-free-perl-installation-management-tool</guid>
	<pubDate>Wed, 12 Jul 2017 03:53:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33866/perlbrew-admin-free-perl-installation-management-tool</link>
	<title><![CDATA[Perlbrew: admin-free perl installation management tool.]]></title>
	<description><![CDATA[<p>perlbrew is an admin-free perl installation management tool. The latest version is 0.79, read the release note:&nbsp;<a href="https://perlbrew.pl/Release-0.79.html">Release 0.79</a>.&nbsp;</p>
<p>Copy &amp; Paste this line into your terminal:</p>
<pre><code>\curl -L https://install.perlbrew.pl | bash
</code></pre>
<p>Or, if your system does not have curl but something else:</p>
<pre><code># Linux
\wget -O - https://install.perlbrew.pl | bash

# FreeBSD
\fetch -o- https://install.perlbrew.pl | sh
</code></pre>
<p>If you prefer to install with cpan, there are two steps:</p>
<pre><code>sudo cpan App::perlbrew
perlbrew init
</code></pre>
<p>If it is installed with cpan, the perlbrew executable should be installed as&nbsp;<code>/usr/bin/perlbrew</code>&nbsp;or&nbsp;<code>/usr/local/bin/perlbrew</code>. For all users who want to use perlbrew, a prior&nbsp;<code>perlbrew init</code>&nbsp;needs to be executed.</p>
<p>The default perlbrew root directory is&nbsp;<code>~/perl5/perlbrew</code>, which can be changed by setting&nbsp;<code>PERLBREW_ROOT</code>environment variable before the installation and initialization. For more advanced installation process, please read&nbsp;<a href="http://metacpan.org/module/App::perlbrew">the perlbrew document</a>.</p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://perlbrew.pl/" rel="nofollow">https://perlbrew.pl/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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