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<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/45351?offset=70</link>
	<atom:link href="https://bioinformaticsonline.com/related/45351?offset=70" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42588/postdoc-in-genomics-of-pipefishes-and-seahorses-at-nsf-funded-postdoctoral-project-in-adam-jones-lab</guid>
  <pubDate>Thu, 07 Jan 2021 21:22:24 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoc in Genomics of Pipefishes and Seahorses at NSF-funded postdoctoral project in Adam Jones' Lab]]></title>
  <description><![CDATA[
<p>An NSF-funded postdoctoral position is available in Adam Jones' Lab<br />at the University of Idaho to study the evolution and development of<br />the male's brood pouch in syngnathid fishes (seahorses, pipefishes<br />and seadragons). The project is being conducted in collaboration<br />with Dr. William Cresko's group at the University of Oregon. The<br />postdoc will be involved in studies of comparative genomics across<br />the family Syngnathidae, investigations of brood pouch morphology, and<br />characterization of the brood pouch microbiome. The position will be<br />funded for two years, with the possibility of a third year. The postdoc<br />will be based at the University of Idaho and will interact extensively<br />with the Cresko Lab at the University of Oregon.</p>

<p>The University of Idaho is in Moscow, a small college town located in<br />Northern Idaho on the Washington border. Moscow is widely considered to<br />be a great place to live, and it's known for a pleasant downtown, active<br />farmer's market, and nearby recreational opportunities. All of Moscow<br />is within biking or walking distance of the University of Idaho. For<br />more information about Moscow, see https://visitmoscowid.com/.</p>

<p>The University of Idaho has very strong faculty in evolution and<br />genomics in multiple departments and interdisciplinary programs. Of<br />particular note are the Bioinformatics and Computational Biology<br />Program (BCB: https://www.uidaho.edu/sci/bcb/people/faculty) and<br />the Institute for Bioinformatics and Evolutionary Studies (IBEST:<br />https://www.ibest.uidaho.edu/index.php). In addition, the University of<br />Idaho is only eight miles from Washington State University in Pullman, and<br />faculty from the two institutions interact and collaborate extensively.</p>

<p>Minimum qualifications include: a Ph.D. in biological sciences,<br />bioinformatics, or a related discipline; experience conducting research<br />in genomics or evolutionary biology, as evidenced by publications<br />in peer-reviewed journals; and evidence of strong written and oral<br />communication skills.  Experience analyzing next-generation sequence<br />data and familiarity with the genomics of marine fishes are desirable<br />but not required.</p>

<p>Apply at: https://uidaho.peopleadmin.com/postings/30003</p>

<p>Review of applications will begin January 15, 2021. The start date<br />is flexible.</p>

<p>The University of Idaho is an equal opportunity/Affirmative Action/equal<br />access employer.</p>

<p>Informal inquiries are encouraged and can be directed to Adam Jones<br />(adamjones@uidaho.edu).</p>

<p>"adamjones@uidaho.edu"</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43341/nigerian-bioinformatics-and-genomics-network-nbgn</guid>
  <pubDate>Tue, 31 Aug 2021 08:29:40 -0500</pubDate>
  <link></link>
  <title><![CDATA[Nigerian Bioinformatics and Genomics Network (NBGN)]]></title>
  <description><![CDATA[
<p>This is to announce the second official conference of the Nigerian Bioinformatics and Genomics Network (NBGN). October 11-13,2021 at Landmark University, Omu-Aran, Kwara State and Zoom ( conference link to be announced soon</p>

<p>#NBGN21</p>

<p>www.nbgn21conference.com</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/43896/list-of-comparative-genomics-resources</guid>
	<pubDate>Tue, 28 Jun 2022 04:08:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/43896/list-of-comparative-genomics-resources</link>
	<title><![CDATA[List of comparative genomics resources !]]></title>
	<description><![CDATA[<div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1096638041"><span>3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes</span></a></div><p>Compare structural and functional annotations of proteins between sequenced genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1100640374"><span>ARED Organism -- expansion of ARED reveals AU-rich element cluster variations between human and mouse</span></a></div><p>View AREs in the human transcriptome and study the comparative genomics of AREs in model organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1234973128"><span>ATGC -- Alignable Tight Genomic Clusters Database</span></a></div><p>Find information about orthologous genes in prokaryotes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174596104"><span>AnimalQTLdb -- a livestock QTL database tool set for positional QTL information mining and beyond</span></a></div><p>Search for publicly available QTL data on livestocks and animal species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518150135"><span>BGDB -- Bovine Genome Database</span></a></div><p>Find information about bovine genomics data.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229012662"><span>COMPARE -- a multi-organism system for cross-species data comparison and transfer of information</span></a></div><p>A multi-organism web-based resource system designed to easily retrieve, correlate and interpret data across species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1218141952"><span>CONDOR -- COnserved Non-coDing Orthologous Regions</span></a></div><p>A database resource of developmentally associated conserved non-coding elements.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1099057221"><span>CORG -- A database for COmparative Regulatory Genomics</span></a></div><p>Delineate conserved non-coding blocks from upstream regions of putative orthologous gene pairs from man, mouse, rat, fugu, Mus musculus, Danio rerio, and zebrafish.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1203608896"><span>COXPRESdb -- a database of coexpressed gene networks in mammals</span></a></div><p>Find coexpressed gene lists and networks in human and mouse.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1097763045"><span>CVTree -- A Phylogenetic Tree Reconstruction Tool Based on Whole Genomes</span></a></div><p>Construct phylogenetic tree of microorganisms based on oligopeptide content of their complete proteomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232729680"><span>CleanEST -- the cleansed EST libraries database</span></a></div><p>A novel database server that classifies GenBank's dbEST (database of expressed gene sequences) libraries and removes contaminants.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1256926144"><span>CoCoa -- COefficient of COAncestry software</span></a></div><p>Find information about the ancestral relationship between genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1227549154"><span>CoGemiR -- a comparative genomics microRNA database</span></a></div><p>Provides an overview of the genomic organization of microRNAs and extent of conservation during evolution in different metazoan species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1117678221"><span>Comparative Genometrics (CG) -- a database dedicated to biometric comparisons of whole genomes</span></a></div><p>Conduct comparative biometric analysis of chromosomes of different organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1151007916"><span>DoTS -- Database Of Transcribed Sequences</span></a></div><p>Search for Indices of gene and transcripts in human and mouse.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174510065"><span>DroSpeGe -- rapid access database for new Drosophila species genomes</span></a></div><p>Search and compare 12 new and old Drosophila genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1098208414"><span>ECR Browser -- A Tool for Visualizing and Accessing Data from Comparisons of Multiple Vertebrate Genomes</span></a></div><p>Access to whole genome alignments of human, mouse, rat and fish sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209738459"><span>EPGD -- Eukaryotic Paralog Group Database</span></a></div><p>Find eukaryotic paralog/paralogon information.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232726869"><span>EVOG -- evolutionary visualizer for overlapping genes</span></a></div><p>Analyze the evolutionary process of overlapping genes when comparing different species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1227633714"><span>GNAT -- Inter-species gene mention normalization (ISGN)</span></a></div><p>The first publicly available system reported to handle inter-species gene mention normalization.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229438992"><span>GenColors -- annotation and comparative genomics of prokaryotes made easy</span></a></div><p>A web-based software/database system aimed at an improved and accelerated annotation of prokaryotic genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1151086258"><span>GeneNest gene indices</span></a></div><p>Visualize gene indices of human, mouse, Arabidopsis, Zebrafish, Drosophila and Sheep.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174489378"><span>GenomeTrafac -- a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs</span></a></div><p>Use comparative genomics approach to characterize gene models and identify putative cis-regulatory regions of RefSeq Gene Orthologs.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518150753"><span>IKMC -- International Knockout Mouse Consortium web portal</span></a></div><p>Find information about mutated mouse genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209411604"><span>IMG/M -- Integrated Microbial Genomes/Metagenomes</span></a></div><p>A data management and analysis system for metagenomes</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1234976694"><span>ISED -- Influenza sequence and epitope database.</span></a></div><p>Search for influenza sequence, vaccine, and drug resistance information.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20140710115515"><span>LAMDHI: The Search for Animal Models Starts Here</span></a></div><p>LAMHDI, the initiative to Link Animal Models to Human DIsease, is designed to accelerate the research process by providing biomedical researchers with a simple, comprehensive Web-based resource to find the best animal models for their research.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1228843803"><span>MANTIS -- a phylogenetic framework for multi-species genome comparisons</span></a></div><p>The missing link between multi-species full genome comparisons and functional analysis.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1099578148"><span>MBGD -- Microbial genome database for comparative analysis</span></a></div><p>Conduct comparative analysis of completely sequenced microbial genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1221077729"><span>MEGA -- Molecular Evolutionary Genetics Analysis</span></a></div><p>A biologist-centric software for evolutionary analysis of DNA and protein sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174596756"><span>MamPol -- a database of nucleotide polymorphism in the Mammalia class</span></a></div><p>Conduct single nucleotide polymorphisms diversity measurements among homologous sequences from the Mammalia class.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1266437314"><span>MicrobesOnline -- Prokaryotic Genome Database</span></a></div><p>Find information about 1000s of microbial genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1208461006"><span>Narcisse -- a mirror view of conserved syntenies</span></a></div><p>A database dedicated to the study of genome conservation.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1219772764"><span>OMA -- the Orthologous MAtrix project</span></a></div><p>Explore orthologous relations across 352 complete genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209738741"><span>OPTIC -- orthologous and paralogous transcripts in clades</span></a></div><p>Browse complete genomes in several clades.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209573208"><span>OrthoDB -- the hierarchical catalog of eukaryotic orthologs</span></a></div><p>Find groups of orthologous genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1221231200"><span>OrthoMaM -- orthologous mammalian markers</span></a></div><p>A database of orthologous genomic markers for placental mammal phylogenetics.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1100009979"><span>PEDANT -- Protein Extraction, Description and ANalysis Tool</span></a></div><p>Conduct genome wide functional and structural analysis.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174489475"><span>PReMod -- a database of genome-wide mammalian cis-regulatory module predictions</span></a></div><p>Conduct genome-wide cis-regulatory module (CRM) predictions for both the human and the mouse genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1151083092"><span>PhenomicDB -- Comparison of phenotypes of orthologous genes in human and model organisms</span></a></div><p>Compare phenotypes of a given gene or gene set in different model organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1190899370"><span>Phylemon -- A suite of web tools for molecular evolution, phylogenetics and phylogenomics</span></a></div><p>Phylemon is a web server that integrates a selected suite of more than 20 different tools from the most popular stand-alone programs of phylogenetic and evolutionary analysis.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232555615"><span>PhyloPat -- the phylogenetic pattern database</span></a></div><p>Use this database to see where in the evolution some phylogenetic lineages were started, and over which species they were contained.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174510223"><span>Pristionchus.org -- a genome-centric database of the nematode satellite species Pristionchus pacificus</span></a></div><p>Search for genomic information on nematode satellite species Pristionchus pacificus.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1236367352"><span>ProtClustDB -- NCBI Protein Clusters Database</span></a></div><p>Find information about related protein sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209410278"><span>ProtozoaDB -- database of protozoan genomes</span></a></div><p>Database hosting genomics and post-genomics data from multiple protozoans.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1232554690"><span>Pseudofam -- the pseudogene families database</span></a></div><p>A database of pseudogene families based on the protein families from the Pfam database.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518151439"><span>RIDM - RIKEN Integrated Database of Mammals</span></a></div><p>Find genomic information about mammals.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1272562567"><span>RegPrecise -- Regulon Prediction Database</span></a></div><p>Find information about predicted regulons in prokaryotic transcription regulation.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1272477473"><span>SALAD -- Surveyed contained motif ALignment diagram and the Associating Dendrogram</span></a></div><p>Perform systematic comparison of proteome data among species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229010765"><span>SGN -- SOL Genomics Network</span></a></div><p>A comparative map viewer dedicated to the biology of the Solanaceae family.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1256669040"><span>ShotgunFunctionalizeR -- R-package for functional comparison of metagenomes</span></a></div><p>Analyze data from functional analysis on fragmented microbial genetic material.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1256238439"><span>SnoopCGH -- Comparative Genomic Hybridization software</span></a></div><p>Visualize and explore comparative genomic hybridization data sets.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1174489598"><span>SwissRegulon -- a database of genome-wide annotations of regulatory sites</span></a></div><p>Search for genome-wide annotations of regulatory sites in yeast and prokaryotes genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1229013521"><span>TaxonGap -- a visualization tool for intra- and inter-species variation among individual biomarkers</span></a></div><p>Compare and select individual biomarkers.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1106063477"><span>The Adaptive Evolution Database (TAED) -- a phylogeny based tool for comparative genomics</span></a></div><p>Search for information on adaptive evolution in gene families of higher plants and chordate.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1216742716"><span>The CGView Server -- a comparative genomics tool for circular genomes</span></a></div><p>Generate graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1099663588"><span>The ERGO -- Genome analysis and discovery system</span></a></div><p>Conduct a comprehensive analysis of genes and genomes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1177611772"><span>The Macaque Genome: Interactive Poster and Teaching Resource</span></a></div><p>An interactive online poster presentation on the Macaque genome, including high-quality images, video clips, and Web resources</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1103816940"><span>The TIGR Gene Indices -- clustering and assembling EST and known genes and integration with eukaryotic genomes</span></a></div><p>Search for annotated genetic information of expressed sequence tags (ESTs) in different eukaryotic organisms.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1043767169"><span>UniGene</span></a></div><p>Find mapping and expression information for a unigene cluster (ESTs and full-length mRNA sequences organized into clusters that each represent a unique known or putative gene)</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1216738072"><span>Uprobe -- universal overgo hybridization-based probe retrieval and design</span></a></div><p>A public online resource for identifying or designing 'universal' overgo-hybridization probes from conserved sequences that can be used to efficiently screen one or more genomic libraries from a designated group of species.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1098205291"><span>VISTA -- Computational Tools for Comparative Genomics</span></a></div><p>Comprehensive suite of programs and databases for comparative analysis of genomic sequences.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL20110518144404"><span>cBARBEL -- Catfish Breeder and Researcher Bioinformatics Entry Location</span></a></div><p>Find information about ictalurid catfish.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1209738040"><span>eggNOG -- evolutionary genealogy of genes: Non-supervised Orthologous Groups</span></a></div><p>Discover orthologous groups of genes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1234370319"><span>metaTIGER -- a metabolic gene evolution resource</span></a></div><p>Find metabolic networks and phylogenomic information on a taxonomically diverse range of eukaryotes.</p></div><div><div><a href="https://www.hsls.pitt.edu/obrc/index.php?page=URL1138901833"><span>xBASE -- a collection of online databases for bacterial comparative genomics</span></a></div><p>Conduct bacterial comparative genomics.</p></div>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/44726/postdoc-at-ubasel-comparative-single-cell-genomics</guid>
  <pubDate>Fri, 13 Dec 2024 12:46:19 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoc at UBasel Comparative Single Cell Genomics]]></title>
  <description><![CDATA[
<p>A fully funded 4-year Postdoc position is available in the lab of Patrick<br />Tschopp at the University of Basel, Switzerland, study the molecular and<br />tissue-scale dynamics during the embryonic formation of the vertebrate<br />skeleton and compare it across different vertebrate species with distinct<br />habitats.</p>

<p>We are looking for a highly motivated candidate with a PhD degree in<br />Bioinformatics or a related field. Candidates are expected to have a<br />strong background in evolutionary biology and/or comparative functional<br />genomics. Additional experiences in single cell functional genomics<br />analyses, statistics and computational data analyses are a plus, as is<br />an interest in comparative developmental (EvoDevo) questions.</p>

<p>We offer a dynamic and interactive research environment with state-of-the<br />art research facilities, good research funding and internationally<br />competitive salaries.</p>

<p>The Tschopp lab (www.evolution.unibas.ch/tschopp/research/)<br />studies the gene regulatory mechanisms of cell type<br />specification and evolution in vertebrates. See also our<br />preprints at https://doi.org/10.1101/2024.03.26.586769 and<br />https://doi.org/10.1101/2024.11.28.625862 Applications should include<br />a motivation letter, a CV, a list of publications, a statement about<br />research interests, as well as the names and contact details of at<br />least two referees. Applications (in the form of a single .pdf file)<br />should be sent to Patrick Tschopp (patrick.tschopp@unibas.ch); review<br />of applications will begin on January 1st 2025, and will continue until<br />the position is filled.</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/44702/postdoc-in-comparative-single-cell-genomics-at-university-of-basel</guid>
  <pubDate>Fri, 06 Dec 2024 23:41:20 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoc in Comparative Single Cell Genomics at University of Basel]]></title>
  <description><![CDATA[
<p>A fully funded 4-year Postdoc position is available in the lab of Patrick<br />Tschopp at the University of Basel, Switzerland, study the molecular and<br />tissue-scale dynamics during the embryonic formation of the vertebrate<br />skeleton and compare it across different vertebrate species with distinct<br />habitats.</p>

<p>We are looking for a highly motivated candidate with a PhD degree in<br />Bioinformatics or a related field. Candidates are expected to have a<br />strong background in evolutionary biology and/or comparative functional<br />genomics. Additional experiences in single cell functional genomics<br />analyses, statistics and computational data analyses are a plus, as is<br />an interest in comparative developmental (EvoDevo) questions.</p>

<p>We offer a dynamic and interactive research environment with state-of-the<br />art research facilities, good research funding and internationally<br />competitive salaries.</p>

<p>The Tschopp lab (www.evolution.unibas.ch/tschopp/research/)<br />studies the gene regulatory mechanisms of cell type<br />specification and evolution in vertebrates. See also our<br />preprints at https://doi.org/10.1101/2024.03.26.586769 and<br />https://doi.org/10.1101/2024.11.28.625862 Applications should include<br />a motivation letter, a CV, a list of publications, a statement about<br />research interests, as well as the names and contact details of at<br />least two referees. Applications (in the form of a single .pdf file)<br />should be sent to Patrick Tschopp (patrick.tschopp@unibas.ch); review<br />of applications will begin on January 1st 2025, and will continue until<br />the position is filled.</p>

<p>Patrick Tschopp</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/45224/liberles-research-group</guid>
  <pubDate>Wed, 12 Aug 2026 03:39:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Liberles Research Group]]></title>
  <description><![CDATA[
<p>The Liberles Research Group works in the areas of computational comparative genomics, and molecular evolution. The central theme in the research group is the detection and characterization of the lineage-specific divergence of protein-encoding genes. Much of the work in the group is done in a phylogenetic context. Ultimately, we want to ask the question, “What makes each species unique at the genomic level?” and “what are the processes driving the functional divergence of genomes?”.</p>

<p>More at https://sites.temple.edu/liberles/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/45310/when-genes-leave-clues-reading-the-evolutionary-footprints-of-life</guid>
	<pubDate>Fri, 11 Sep 2026 13:47:07 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/45310/when-genes-leave-clues-reading-the-evolutionary-footprints-of-life</link>
	<title><![CDATA[When Genes Leave Clues: Reading the Evolutionary Footprints of Life]]></title>
	<description><![CDATA[<p>Imagine walking through a forest and finding two sets of footprints that always appear, disappear, and reappear together. You might wonder whether the animals are connected. In genomics, genes leave similar footprints across evolution. When two genes repeatedly occur together&mdash;or disappear together&mdash;across different species, their shared evolutionary history can provide clues about their function.</p><p>This idea, known as phylogenetic profiling, is the foundation of Profylo (https://github.com/MartinSchoenstein/Profylo), an open-source Python toolkit developed for comparing evolutionary profiles and discovering co-evolving genes. Profylo brings together seven profile-comparison methods and four approaches for identifying co-evolving gene clusters, making it easier to explore hidden functional relationships within genomes.</p><p>The study demonstrates that even a simple matrix of gene presence and absence can reveal meaningful biological patterns. By following these evolutionary footprints, researchers can generate new hypotheses about unknown genes, pathways, and molecular interactions. In a world where genomes are being sequenced faster than ever, tools like Profylo offer an exciting way to let evolution itself become a guide to understanding gene function.</p><p>More at&nbsp;https://link.springer.com/article/10.1007/s00239-025-10280-6&nbsp;</p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2728/statistics-of-current-sequencing-and-bioinformatics-market</guid>
	<pubDate>Wed, 21 Aug 2013 08:29:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2728/statistics-of-current-sequencing-and-bioinformatics-market</link>
	<title><![CDATA[Statistics of current Sequencing and Bioinformatics market]]></title>
	<description><![CDATA[<p>This survey conducted by&nbsp;<strong>Oxford&nbsp;<a href="http://www.ogt.co.uk/" target="_blank">Gene</a>&nbsp;Technology,</strong>&nbsp;<span>provider of innovative&nbsp;genetics&nbsp;research and&nbsp;biomarker</span>&nbsp;<span>solutions to advance molecular medicine, has released the results from a recent survey of researchers using next generation sequencing. (Source:<a href="http://www.news-medical.net/news/20130821/Oxford-Gene-Technology-releases-next-generation-sequencing-survey-results.aspx">http://www.news-medical.net/news/20130821/Oxford-Gene-Technology-releases-next-generation-sequencing-survey-results.aspx</a>&nbsp;)</span></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="http://www.ogt.com/assets/0000/3190/NGS_Survey_2013_Infographic_Web.pdf" rel="nofollow">http://www.ogt.com/assets/0000/3190/NGS_Survey_2013_Infographic_Web.pdf</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/3029/bioinformatics-market-in-india</guid>
	<pubDate>Fri, 23 Aug 2013 07:08:49 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/3029/bioinformatics-market-in-india</link>
	<title><![CDATA[Bioinformatics market in India]]></title>
	<description><![CDATA[<div><strong>Key Topics Covered in the Report:</strong></div>
<ul>
<li>The market size of the Indian Bioinformatics Industry , FY&rsquo;2007-FY&rsquo;2013</li>
<li>Market segmentation of India bioinformatics industry by application by sectors, FY&rsquo;2007-FY&rsquo;2013</li>
<li>Market Segmentation of India bioinformatics industry by products and services,FY&rsquo;2007-FY&rsquo;2013</li>
<li>Market Segmentation of India bioinformatics industry by applications of bioinformatics ,FY&rsquo;2007-FY&rsquo;2013</li>
<li>India bioinformatics industry trends and developments</li>
<li>Government regulations and initiatives of India bioinformatics industry</li>
<li>Major bioinformatics research institutes in India</li>
<li>Market Share of leading players in bioinformatics industry in India,FY&rsquo;2013</li>
<li>Company profiles of major players in India bioinformatics industry</li>
<li>Future outlook and projections on the basis of revenue in India bioinformatics market, FY&rsquo;2014-FY&rsquo;2018</li>
</ul>
<p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;(Source: Ken Research)</p><p>Address of the bookmark: <a href="http://www.kenresearch.com/healthcare/biotechnology/india-bioinformatics-industry-research-report/392-91.html" rel="nofollow">http://www.kenresearch.com/healthcare/biotechnology/india-bioinformatics-industry-research-report/392-91.html</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture</guid>
	<pubDate>Fri, 27 Sep 2013 04:24:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture</link>
	<title><![CDATA[Molecular Genetics Lecture]]></title>
	<description><![CDATA[<p><span>"Robert Sapolsky makes interdisciplinary connections between behavioral biology and molecular genetic influences. He relates protein synthesis and point mutations to microevolutionary change, and discusses conflicting theories of gradualism and punctuated equilibrium and the influence of epigenetics on development theories."&nbsp;</span></p>
<p><span>"<span><strong>Robert Sapolsky</strong> is an American neuroendocrinologist, professor of biology, neuroscience, and neurosurgery at Stanford University, researcher and author" ----Wikipedia</span></span></p><p>Address of the bookmark: <a href="http://www.youtube.com/watch?v=_dRXA1_e30o" rel="nofollow">http://www.youtube.com/watch?v=_dRXA1_e30o</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

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