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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/4959?offset=850</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40476/libsdyogen-libibrary-for-comparative-genomics</guid>
	<pubDate>Wed, 25 Dec 2019 01:32:39 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40476/libsdyogen-libibrary-for-comparative-genomics</link>
	<title><![CDATA[LibsDyogen: Libibrary for comparative genomics]]></title>
	<description><![CDATA[<p>Library of usual classes and functions written in python and used in the Dyogen team for comparative genomics applications.</p>
<p>Collaborative python library used in the<span>&nbsp;</span><a href="http://www.ibens.ens.fr/?rubrique43&amp;lang=fr">DYOGEN team</a>for studying the evolution of gene order in vertebrates.</p>
<p><a href="http://www.ibens.ens.fr/?rubrique43&amp;lang=fr">http://www.ibens.ens.fr/?rubrique43&amp;lang=fr</a></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://github.com/DyogenIBENS/LibsDyogen" rel="nofollow">https://github.com/DyogenIBENS/LibsDyogen</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/19090/deeptools</guid>
	<pubDate>Sat, 08 Nov 2014 15:02:08 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/19090/deeptools</link>
	<title><![CDATA[deepTools]]></title>
	<description><![CDATA[<p>deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. To do so, deepTools contains useful modules to process the mapped reads data to create coverage files in standard bedGraph and bigWig file formats. By doing so, deepTools allows the creation of normalized coverage files or the comparison between two files (for example, treatment and control). Finally, using such normalized and standardized files, multiple visualizations can be created to identify enrichments with functional annotations of the genome.<br /><br />Publicaton: http://nar.oxfordjournals.org/content/early/2014/05/05/nar.gku365.full<br /><br />Source Code and Wiki: https://github.com/fidelram/deepTools/wiki<br /><br />Galaxy Tool Shed repository: http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools<br /><br />and example Galaxy workflows: http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_workflows</p>]]></description>
	<dc:creator>Martin Jones</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42143/sibelia-a-comparative-genomics-tool</guid>
	<pubDate>Sat, 22 Aug 2020 02:49:00 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42143/sibelia-a-comparative-genomics-tool</link>
	<title><![CDATA[Sibelia: A comparative genomics tool]]></title>
	<description><![CDATA[<p><strong>Sibelia</strong>: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.&nbsp;</p>
<p><strong>Sibelia</strong>&nbsp;is useful in finding: (1) shared regions, (2) regions that present in one group of genomes but not in others, (3) rearrangements that transform one genome to other genomes.</p>
<p>More at&nbsp;<a href="http://bioinf.spbau.ru/sibelia">http://bioinf.spbau.ru/sibelia</a></p>
<p>Sibelia docs&nbsp;<a href="http://gensoft.pasteur.fr/docs/Sibelia/3.0.7/SIBELIA.md">http://gensoft.pasteur.fr/docs/Sibelia/3.0.7/SIBELIA.md</a></p><p>Address of the bookmark: <a href="https://github.com/bioinf/Sibelia" rel="nofollow">https://github.com/bioinf/Sibelia</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19161/niab-molecular-biologybioinformatics-scientistra-openings</guid>
  <pubDate>Thu, 13 Nov 2014 13:37:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[NIAB Molecular Biology/Bioinformatics Scientist/RA Openings]]></title>
  <description><![CDATA[
<p>D. No. 1-121/1, 4th and 5th Floors, Axis Clinicals Building, Miyapur, Hyderabad, Telangana, India- 500 049</p>

<p>Email: admin@niab.org.in Telephones: +91 40 2304 9403 Telefax: +91 40 2304 2740<br />Advertisement No: 5/2014</p>

<p>About NIAB National Institute of Animal Biotechnology (NIAB), Hyderabad, an autonomous institute under the aegis of Department of Biotechnology, Government of India, is aimed to harness novel and emerging biotechnologies and create knowledge in the cutting edge areas for improving animal health and productivity.</p>

<p>Applications are invited for the following temporary research positions to work in ongoing DBTBBSRC sponsored research project entitled “Transcriptome Analysis in Indian buffalo and the Genetics of Innate Immunity” at the National Institute of Animal Biotechnology, Hyderabad.</p>

<p>(A) Project Scientist – Level B (One Position)</p>

<p>Emoluments: Rs. 15600 + GP Rs. 5400 + 30 % HRA p.m. (Total emoluments will be Rs. 49,770/-p.m. for the duration of the project)</p>

<p>Essential Qualification: Candidates having M.V.Sc. in Veterinary Microbiology / Veterinary Pathology / Veterinary Public Health / Ph.D. degree in Life Sciences, Biotechnology, Molecular Biology or any other related field from the recognized university are eligible to apply.</p>

<p>The candidate should have a good academic record and research experience as evidenced from published in standard referred journals / patents.</p>

<p>Desirable: Candidates having research experience in the area of tissue culture, genomics, Transcriptomics and Advanced Molecular Biology will be given preference.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>(B) Research Associate in Bioinformatics (One position)</p>

<p>Fellowship: Rs. 22,000 + 30 % HRA</p>

<p>Essential Qualification: Candidates having Ph.D. degree or M.Tech. with three years of<br />experience in Bioinformatics, Computational Biology, Biotechnology, Life Sciences or any other related field are eligible to apply.</p>

<p>Desirable: Candidate having research experience in the area of next generation sequencing (NGS) data analysis, Genome wide association studies, Genomic selection, advance genomic data analysis etc., will be given preference. The candidate should have a good academic record and research experience as evidenced from published papers in standard journals / patents.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>Project Duration: The duration of the project is Three years and the positions are co- terminus with the duration of the project. (Initial appointment will be for one year and further extension will be granted based on annual review).</p>

<p>Mode of submission of application: Only online applications are to be submitted through<br />www.niab.org.in on or before 08 December, 2014. Link for online submission of applications will be available from 10 November 2014.</p>

<p>Advertisement: www.niab.org.in/Notifications/Advt_5_2014/Advt_5_2014.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43227/project-associate-i-project-associate-ii-senior-project-associate-igib</guid>
  <pubDate>Thu, 05 Aug 2021 16:11:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB]]></title>
  <description><![CDATA[
<p>Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application. </p>

<p>Project Scientist-I <br />Experimental / Computation analysis experience in highthroughput genomics/ clinical application.</p>

<p>Project Manager <br />Experience in handling large biological projects involving high-throughput genomics/ clinical application.</p>

<p>Scientific Administrative Assistant <br />Lab Work. </p>

<p>More at https://vinodscaria.genomes.in/positionsopen</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19249/bioinformatics-jrfrasrf-position-at-panjab-university</guid>
  <pubDate>Wed, 19 Nov 2014 20:19:49 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/RA/SRF position at PANJAB UNIVERSITY]]></title>
  <description><![CDATA[
<p>CENTRE FOR SYSTEMS BIOLOGY &amp; BIOINFORMATICS<br />UIEAST, PANJAB UNIVERSITY, CHANDIGARH</p>

<p>Applications are invited along with complete bio-data and attested copies of certificates of qualifications, experience etc. for the one post of Research Fellow and one post of Program Assistant under PURSE Grant of the University in Centre for Systems Biology &amp; Bioinformatics, UIEAST, Panjab University, Chandigarh which is tenable till the period of<br />the project.</p>

<p>Essential Qualification</p>

<p>For Research Fellow:-</p>

<p>M.Sc. in Systems Biology and Bioinformatics / Life Sciences with minimum 55% marks.</p>

<p>Preference will be given to NET/GATE/ICMR qualified candidates without fellowship however, candidates who have cleared the Panjab University Ph.D. entrance test in Systems Biology &amp; Bioinformatics will also be eligible.</p>

<p>For Program Assistant:-</p>

<p>The candidate must have M.Sc./M.Tech/MCA/PGDCA in Computer Science and must be able to handle LAN, Linex. Preference will be given to the candidate having experience in<br />System Administration.</p>

<p>Emoluments</p>

<p>For Research Fellow Rs. 12,500/- per month (Fixed)<br />For Program Assistant Rs. 12,500/- per month (Fixed)</p>

<p>Applications should be reach on or before 19-11-2014 in the office of the undersigned.</p>

<p>Interview will be held on 21-11-2014 in the office of the Coordinator, Centre for Systems Biology &amp; Bioinformatics, South Campus, Block-3, Sector-25, Panjab University, Chandigarh. No TA/DA will be paid.</p>

<p>Advertisement:</p>

<p>http://jobs.puchd.ac.in/includes/jobs/2014/20141110143634-Advertisement.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44661/lovis4u-locus-visualisation-tool-for-comparative-genomics</guid>
	<pubDate>Tue, 17 Sep 2024 02:30:57 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44661/lovis4u-locus-visualisation-tool-for-comparative-genomics</link>
	<title><![CDATA[LoVis4u: Locus Visualisation tool for comparative genomics]]></title>
	<description><![CDATA[<p dir="auto"><a href="https://github.com/art-egorov/lovis4u/blob/main/docs/img/lovis4u_logo.png" target="_blank"><img src="https://github.com/art-egorov/lovis4u/raw/main/docs/img/lovis4u_logo.png" alt="image" width="300" style="border: 0px; border: 0px;"></a></p>
<div dir="auto">
<h2 dir="auto">Description</h2>
<a href="https://github.com/art-egorov/lovis4u#description"></a></div>
<p dir="auto"><span>LoVis4u</span>&nbsp;is a bioinformatics tool for&nbsp;<span>Lo</span>ci&nbsp;<span>Vis</span>ualisation.</p>
<p dir="auto"><span>LoVis4u, a command-line tool and Python API designed for highly customizable and fast visualisation of multiple genomic loci. LoVis4u generates vector images in PDF format based on annotation data from GenBank or GFF files. It is capable of visualising entire genomes of bacteriophages as well as plasmids and user-defined regions of longer prokaryotic genomes. Additionally, LoVis4u offers optional data processing steps to identify and highlight accessory and core genes in input sequences.</span></p>
<p dir="auto">https://art-egorov.github.io/lovis4u/</p>
<p dir="auto">&nbsp;</p><p>Address of the bookmark: <a href="https://github.com/art-egorov/lovis4u" rel="nofollow">https://github.com/art-egorov/lovis4u</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19541/bioinformatics-sub-dic-dic</guid>
  <pubDate>Fri, 12 Dec 2014 21:14:57 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SUB DIC (DIC)]]></title>
  <description><![CDATA[
<p>Project Title BIOINFORMATICS SUB DIC (DIC)</p>

<p>Reference Number IIT/SRIC/R/DIC/2014/314, DATED 28thNovember, 2014</p>

<p>Temporary Position(s)</p>

<p>i) Junior/ Senior Project Officer (1)<br />ii) Junior Project Assistant (2)</p>

<p>Consolidated Compensation</p>

<p>i) Rs.16,000/- to Rs.18,000/- p.m. (depending on qualification &amp; experience)<br />ii) Rs.8,000/- to Rs.10,000/- p.m. (depending on qualification &amp; experience)</p>

<p>Coordinator / PI Dr. Sudip K. Ghosh, Dept of Biotechnology.</p>

<p>Department / Centre / School Dept of Biotechnology </p>

<p>Qualifications &amp; Experience</p>

<p>(i) M. Sc in any branch of Life Sciences with experience in Molecular  Biology/Genetics/Biochemistry preferably a Post Graduate diploma in Bioinformatics or two years working experience in bioinformatics (Minimum 60% marks starting from matriculation examination).</p>

<p>(ii) B. Sc. /B.A. /B. Com/Diploma in Management or Computer Science. Knowledge in computer software will be preferred (minimum 50% marks starting from matriculation examination).</p>

<p>More Information</p>

<p>Interested eligible persons may apply on plain paper, giving full bio-data along with attested copies of testimonials to the undersigned on or before 11thDecember, 2014. </p>

<p>Sponsor DBT, NEW DELHI</p>

<p>Last Date 11 Dec 2014</p>

<p>Application Fee Demand Draft for Rs.50/- (Not for female candidates) drawn in favour of IIT Kharagpur payable at Kharagpur</p>

<p>Advertisement: www.iitkgp.ac.in/topfiles/sric_job_details.php?serial=2826</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19631/rosalind-bioinformatics-problems</guid>
	<pubDate>Thu, 18 Dec 2014 10:32:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19631/rosalind-bioinformatics-problems</link>
	<title><![CDATA[Rosalind Bioinformatics problems !!!]]></title>
	<description><![CDATA[<p>Rosalind is a platform for learning bioinformatics and programming through problem solving. <a href="http://rosalind.info/problems/list-view/">Take a tour</a> to get the hang of how Rosalind works.</p>
<p>http://rosalind.info/problems/list-view/</p><p>Address of the bookmark: <a href="http://rosalind.info/problems/list-view/" rel="nofollow">http://rosalind.info/problems/list-view/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19580/internship-program-for-bioinformatics-biotechnology-mba-mca-no-of-vacancy-5</guid>
  <pubDate>Mon, 15 Dec 2014 08:11:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[Internship Program for Bioinformatics / Biotechnology / MBA / MCA (No. Of Vacancy: 5)]]></title>
  <description><![CDATA[
<p>ArrayGen is offering an Internship Program for Post graduate Bioinformatics / Biotechnology / MBA / MCA students and professionals. ArrayGen Technologies provide an excellent opportunity to gain research experience and explore if a scientific career is right for you. Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis or marketing or software development. Applications are accepted throughout the year. Accepted students will be notified through email.</p>
]]></description>
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