BOL: Related items

PhD at INSTITUTE OF LIFE SCIENCES, Bhubaneswar

Mon, 30 May 2016 03:36:04 -0500

INSTITUTE OF LIFE SCIENCES

Bhubaneswar 751023

Advt No. 07/2016

Institute of Life Sciences (ILS), Bhubaneswar, an autonomous Institute of the Department of Biotechnology, Ministry of Science & Technology, Government of India engaged in advanced research invites applications from Indian nationals for the Ph.D. program. The main focus of the projects will be computational biology in the following areas.

S. No. Area of Research Principal investigator

1. Computational Cancer Biology Dr. Anshuman Dixit

2. Immunogenomics & Systems Biology Dr. Sunil Kumar Raghav

3. Chromatin remodeling and hematopoiesis Dr. Punit Prasad

Candidates are strongly encouraged to visit ILS webpage for detailed information, regarding the research activities of the above mentioned scientists.

Essential Qualifications:

(a) Eligibility: M.Sc., M.V.Sc., M.Pharm., M.S. Pharma. (with NET/GATE/GPAT/BINC/any other equivalent national level exam) or M.Tech with minimum of 60% marks (or equivalent grade point). Those awaiting final result may also apply.

Applications received after the last date will not be accepted. The envelope should clearly be superscribed with “Application for Ph.D. program (computational biology)”. Short-listed candidates selected for the interview will be published in the Institute website (www.ils.res.in).

Application Fees: Applicants except SC/ST candidates are required to send a non-refundable D.D. for Rs.100/- in favour of “Director, Institute of Life Sciences, Bhubaneswar” payable at Bhubaneswar along with duly filled-in application form by the date mentioned below. Director, ILS reserves the right to withdraw the procedure without assigning any reasons thereof.

Important dates: 

Last date of receiving applications: 24th June 2016 

Date of display of short-listed candidates and instructions on the Institute website: 30th June 2016 

Date of interview: The interview will be organized on 25th July 2016

Advertisement: https://www.ils.res.in/wp-content/uploads/2016/05/advt07-16.pdf

Awesome bioinformatics pipelines !

Jitendra Prajapati — Wed, 30 Mar 2016 21:50:41 -0500

A curated list of awesome pipeline toolkits ...

https://github.com/pditommaso/awesome-pipeline

Address of the bookmark: https://github.com/pditommaso/awesome-pipeline

Dynamic Programming Alignment

Thu, 22 Aug 2013 09:38:28 -0500

lecture 9, Chem. C100, Spring 2013, UCLA

Tetra-Nucleotide Analysis

Jit — Thu, 04 May 2017 05:07:41 -0500

A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the information of whole genome, it is evident that it cannot replace other alignment-based phylogenetic methods such as OrthoANI or 16S rRNA phylogeny. However, TNA can be useful for phylogenetic characterization when whole genome or 16S rRNA gene information is not available. For example, a partial genomic fragment obtained from a metagenome can be identified by TNA (Teeling et al., 2004). TNA is also fast enough that it can be used as a search engine against a large genome database.

Address of the bookmark: https://chunlab.wordpress.com/tetra-nucleotide-analysis/

International Conference on Bioinformatics Models, Methods and Algorithms

Rahul Agarwal — Sun, 05 Oct 2014 11:42:52 -0500

The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together researchers and practitioners interested in the application of computational systems and information technologies to the field of molecular biology, including for example the use of statistics and algorithms to understanding biological processes and systems, with a focus on new developments in genome bioinformatics and computational biology. Areas of interest for this community include sequence analysis, biostatistics, image analysis, scientific data management and data mining, machine learning, pattern recognition, computational evolutionary biology, computational genomics and other related fields.

Position Paper Submission Extension: October 9, 2014
Regular Paper Authors Notification: November 3, 2014
Position Paper Authors Notification: November 6, 2014
Regular and Position Paper Camera Ready and Registration: November 17, 2014

Address of the bookmark: http://www.bioinformatics.biostec.org/

scikit-bio™ is an open-source, BSD-licensed, python package providing data structures, algorithms, and educational resources for bioinformatics.

Jit — Fri, 02 Mar 2018 04:29:47 -0600

scikit-bio is currently in beta. We are very actively developing it, and backward-incompatible interface changes can and will arise. To avoid these types of changes being a surprise to our users, our public APIs are decorated to make it clear to users when an API can be relied upon (stable) and when it may be subject to change (experimental). See the API stability docs for more details, including what we mean by stable and experimental in this context.

Address of the bookmark: http://scikit-bio.org/

IBL laboratory

Mon, 12 Aug 2013 02:02:29 -0500

The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative agents, heavy metals, or drastic changes in nutrients availability. The genome-wide responses studied with the "omics" techniques (transcriptomics, proteomics, metabolomics and genetics) generate a wealth of experimental data, which are processed, archived, integrated and represented as working models through bioinformatics and mathematics.

Link : http://www-dsv.cea.fr/en/instituts/institut-de-biologie-et-de-technologies-de-saclay-ibitec-s/unites-de-recherche/service-de-biologie-integrative-et-genetique-moleculaire-sbigem/laboratoire-de-biologie-integrative-lbi/presentation__1

List of Bioinformatics and Computational Biology Journals

Jitendra Narayan — Wed, 17 Jul 2013 02:36:53 -0500

Hi Bioinformatician and Computational Biologist, this is the comprehensive list of all (?) the bioinformatics and computational biology journals. Please update me if you know any other good journals related with our domains. Feel free to add your comments and suggestions. You comments will be helpful for others...

*The journals are not listed in any ascending, descending, or impact factors oders.

Bioinformatics

Journal of Computational Biology

Briefings in Bioinformatics

Protein Engineering

Nucleic Acids Research

Trends in Biotechnology

Proceedings of the National Academy of Sciences

Folding and Design

Genome Biology

Journal of Biomedical Informatics

Bioinformation

Journal of Computational Intelligence in Bioinformatics

Journal of Structural and Functional Genomics

Journal of Molecular Graphics and Modelling

Metabolic Engineering

Computers & Chemistry

Artificial Intelligence in Medicine

Journal of Biomedical Science

Artificial Intelligence

Machine Learning

Applied Bioinformatics

Applied Genomics and Proteomics

BMC Bioinformatics

Online Journal of Bioinformatics (OJB)

PSB On-Line Proceedings

Bioinformatics: Information Technology & Systems (BITS)

Data Mining and Knowledge Discovery

The EMBO Journal

Current Opinions in Structural Biology

Journal of Molecular Microbiology and Biotechnology

Nature

Nature Structural Biology

Journal of Machine Learning Research

Nature Genetics

Current Opinion in Genetics & Development

Nature Biotechnology

Trends in Biochemical Sciences

Proteins: Structure, Function, and Genetics

Nature Cell Biology

Trends in Genetics

ChemBioChem

Trends in Molecular Medicine

Journal of Molecular Modelling

Trends in Pharmacological Sciences

Drug Discovery Today

Others Free Online Full-text Journals

BioPython Cookbook

Jitendra Narayan — Thu, 08 Aug 2013 06:43:02 -0500

If you are planning to start learning BioPython ( it does not bite but swallow :P just kidding) then this online cookbook will be really helpful for you.

http://biopython.org/DIST/docs/tutorial/Tutorial.html

List of pharmacogenomics companies worldwide

Jitendra Narayan — Fri, 09 Aug 2013 13:24:47 -0500

Pharmacogenomics are the most promising area of research. Here is the list of some Pharmacogenomics companies worldwide. Feel free to add more pharmacogenomics companies if not mentioned in here.

Great Pharmacogenomics companies
www.aruplab.com
www.clarientinc.com
www.cns-hts.com
www.dnanow.com
www.dnavision.be
www.dnavision.com
www.dxsdiagnostics.com
www.entrogen.com
www.exiqon.com
www.gene.com
www.genomichealth.com
www.genoptix.com
www.genpathdiagnostics.com
www.gentris.com
www.immunicon.com
www.ingenuity.com
www.lab21.com
www.labcorp.com
www.lion-ag.de
www.lynxgen.com
www.mayoclinic.com
www.mesoscale.com
www.microcide.com
www.mitokor.com
www.monarchlifesciences.com
www.mplnet.com
www.orchidbio.com
www.pebio.com
www.phenomenome.com
www.phenopath.com
www.ppgx.com
www.prometheuslabs.com
www.protogene.com
www.questdiagnostics.com
www.rigelinc.com
www.rii.com
www.saladax.com
www.tmdlab.com
www.transgenomic.com
www.twt.com
www.uslabs.net
www.variagenics.com

Great Equipment Companies for Genomics
www.affymetrix.com
www.illumina.com
www.iontorrent.com
www.sequenom.com
www.appliedbiosystems.com
www.454.com
www.appliedbiosystems.com

Genomics in India
www.ganitlabs.in
www.sandor.co.in
www.igib.res.in
www.genotypic.co.in
www.ocimumbio.com
www.abcgenomics.com
www.xcelrisgenomics.com
www.ayugen.com
www.geneombiotech.com

Large Global Whole Genome Companies
www.decode.com
www.23andme.com
www.navigenics.com
www.pathway.com

Global companies offering genomics services
www.asuragen.com
www.baseclear.com
www.agtcenter.com
www.ambrygen.com
www.arosab.com
www.agrf.org.au
www.beckmangenomics.com
www.genomics.cn
www.bsf.a-star.edu.sg
www.cbm.fvg.it
www.cincinnatichildrens.org
www.cofactorgenomics.com
www.covance.com
www.dnalandmarks.ca
www.dnavision.com
www.expressionanalysis.com
www.fasteris.com
www.gatc-biotech.com
www.genesdiffusion.com
www.geneseek.com
www.geneticvisions.com
www.geneworks.com.au
www.genizon.com
www.genoskan.dk/uk
www.gpbio.jp
www.igatechnology.com
www.igenixinc.com
www.auxologico.it
www.lifeandbrain.com
www.macrogen.co.kr/eng
www.gqinnovationcenter.com
www.mftservices.de
www.ncgr.org
www.ramaciotti.unsw.edu.au
www.rikengenesis.jp
www.SABiosciences.com
www.sequensysbio.com
www.servicexs.com
www.snp-genetics.com
www.takara-bio.com
www.gen-probe.com
www.traitgenetics.com