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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/5187?offset=280</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/27038/worldwide-funding-agencies-to-fund-your-bioinformatics-research</guid>
	<pubDate>Tue, 19 Apr 2016 13:04:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/27038/worldwide-funding-agencies-to-fund-your-bioinformatics-research</link>
	<title><![CDATA[Worldwide funding agencies to fund your bioinformatics research !!]]></title>
	<description><![CDATA[<p>Are you seeking funding for research or training in a particular area? Check out the following agencies ...</p><ol>
<li><a href="http://www.nsf.gov/funding/" target="_blank">National Science Foundation</a>:&nbsp;For the love of science! Head here when searching for ways to pay for that gargantuan geology or bigtime biology project. And other disciplines, of course.</li>
<li><a href="http://www.humboldt-foundation.de/web/sponsorship.html" target="_blank">Alexander von Humboldt Foundation</a>:&nbsp;Humbolt fellows embody the spirit of science and leadership alike, and the organization sponsors thinkers in Germany and abroad alike.</li>
<li><a href="http://www.nationalparks.org/our-work/grant-applications" target="_blank">National Parks Foundation</a>:&nbsp;Americans who want to preserve their country&rsquo;s gorgeous parks and trails pitch projects to this governing body, concerned largely with ecology and accessibility issues.</li>
<li><a href="http://www.sloan.org/apply-for-grants/" target="_blank">Alfred P. Sloan Foundation</a>:&nbsp;Money is available here throughout the year, covering science and engineering and their overlaps with civics, education, and economics.</li>
<li><a href="http://www.whitehall.org/about/" target="_blank">The Whitehall Foundation</a>:&nbsp;The Whitehall Foundation, through its program of grants and grants-in-aid, assists scholarly research in the life sciences. It is the Foundation&rsquo;s policy to assist those dynamic areas of basic biological research that are not heavily supported by Federal Agencies or other foundations with specialized missions.</li>
<li><a href="http://www.hfsp.org/funding/research-grants" target="_blank">Human Frontier Science Program</a>:&nbsp;Research grants from the Human Frontier Science Program are provided for teams of scientists from different countries who wish to combine their expertise in innovative approaches to questions that could not be answered by individual laboratories.</li>
<li><a href="http://www.sba.gov/content/research-grants-small-businesses" target="_blank">The U.S. Small Business Administration</a>:&nbsp;The U.S. Small Business Administration offers research grants to small businesses that are engaged in scientific research and development projects that meet federal R&amp;D objectives and have a high potential for commercialization.</li>
<li><a href="http://www.welch1.org/grants-and-programs/research-grants">The Welch Foundation</a>:&nbsp;The Welch Foundation provides grants for a minimum of $60,000 in funding to support research in chemistry by a full-time tenured or tenure-track faculty member who serves as principal investigator. Applications are restricted to universities, colleges, or other educational institutions located within the state of Texas.</li>
<li><a href="http://leakeyfoundation.org/research-grants/">The Leakey Foundation</a>:&nbsp;The Leakey Foundation offers research grants of up to $25,000 to doctoral and post-doctoral students as well as senior scientists, for research related specifically to human origins.</li>
<li><a href="http://www.acsm.org/find-continuing-education/awards-grants/research-grants">American College of Sports Medicine</a>:&nbsp;The American College of Sports Medicine offers several possible grants to research students in the areas of general and applied science.</li>
<li><a href="http://www.bdbiosciences.com/research/grant/">BD Biosciences</a>:&nbsp;BD Biosciences Research Grants* aim to reward and enable important research by providing vital funding to scientists pursuing innovative experiments that advance the scientific understanding of disease. This ongoing program includes grants for immunology and stem cell research, totaling $240,000 annually in BD Biosciences research reagents.</li>
<li><a href="http://www.sigmaxi.org/programs/giar/">Sigma Xi</a>:&nbsp;The Sigma Xi program awards grants for research in areas of science, engineering, astronomy and vision.</li>
<li><a href="http://www.uefoundation.org/grants.html">The United Engineering Foundation</a>:&nbsp;The United Engineering Foundation advances the engineering arts and sciences for the welfare of humanity. It supports engineering and education by, among other means, making grants.</li>
<li><a href="http://grants.nih.gov/grants/oer.htm" target="_blank">National Institutes of Health</a>:&nbsp;Foreign and American medical professionals hoping to advance their research might want to consider one of these prestigious (and generous) endowments.</li>
<li><a href="http://www.whitaker.org/grants/overview" target="_blank">Whitaker International Program</a>:&nbsp;Biomedical engineering&rsquo;s global reach serves as this organization&rsquo;s focus, so applications here need to open themselves up to international institutions and applications.</li>
<li><a href="http://www.nlm.nih.gov/grants.html" target="_blank">U.S. National Library of Medicine</a>:&nbsp;From tech to small businesses, the USNLM&rsquo;s funding programs cover a diverse range of fields that feed into medicine.</li>
<li><a href="http://my.americanheart.org/professional/Research/Research_UCM_316889_SubHomePage.jsp" target="_blank">American Heart Association</a>:&nbsp;Most of the AHA&rsquo;s research involves cardiovascular disease and stroke, with funding in these areas available in the winter and the summer.</li>
<li><a href="http://swhr.org/initiatives/grants-awards/" target="_blank">Society for Women&rsquo;s Health Research</a>:&nbsp;Female engineers and scientists benefit from these grants meant to support anything that improves women&rsquo;s health and education on a global scale.</li>
<li><a href="http://www.damonrunyon.org/research_results/categories/category/award_programs/" target="_blank">Damon Runyon Cancer Research Foundation</a>:&nbsp;Every cent donated to the DRCRF directly feeds into fellowships and awards bringing humanity closer to cancer cures and improved prevention regimens.</li>
<li><a href="http://www.bwfund.org/pages/52/Grant-Programs/" target="_blank">Burroughs Wellcome Fund</a>:&nbsp;Emerging scientists working in largely underrecognized and underfunded biomedical fields are the main recipients of this private foundation&rsquo;s money.</li>
<li><a href="http://www.abmrf.org/appyling_grant.asp" target="_blank">The Foundation for Alcohol Research</a>:&nbsp;As one can probably assume from the name, The Foundation for Alcohol Research contributes to projects studying how alcohol impacts human physical and mental health.</li>
<li><a href="http://www.alexslemonade.org/grants" target="_blank">Alex&rsquo;s Lemonade Stand</a>:&nbsp;These grants go towards doctors, nurses, and medical researchers concerned with curing childhood cancer.</li>
<li><a href="http://www.cancer.gov/grants-training/grants" target="_blank">National Cancer Institute</a>:&nbsp;Thanks to a little help from their friends in Congress, the National Cancer Institute have $4.9 billion to share with medical science.</li>
<li><a href="http://www.bushfoundation.org/solutions/building-leadership-capacity/bush_fellowship" target="_blank">Bush Foundation Fellowship Program</a>:&nbsp;Leadership&rsquo;s many forms are the main focus of the BFFP, who give money to folks dedicated to improving their communities.</li>
<li><a href="http://oedb.org/financial-aid/grants/" target="_blank">The David &amp; Lucile Packard Foundation</a>:&nbsp;Nonprofit organizations dedicated to growing education, charities, health, and other social justice causes should consider seeing what money they can land through this foundation.</li>
<li><a href="http://www.afar.org/research/funding/afar-research-grants/" target="_blank">American Federation for Aging Research</a>:&nbsp;AFAR provides up to $100,000 for a one- to two-year award to junior faculty (M.D.s and Ph.D.s) to conduct research that will serve as the basis for longer term research efforts in the areas of Biomedical and clinical research.</li>
<li><a href="http://mda.org/research2/grant-types">The Muscular Dystrophy Association</a>:&nbsp;The MDA is pursuing the full spectrum of research approaches that are geared toward combating neuromuscular diseases. MDA also helps spread this scientific knowledge and train the next generation of scientific leaders by funding national and international research conferences and career development grants.</li>
<li><a href="http://oedb.org/ilibrarian/100_places_to_find_funding_your_research/%22http://www.cff.org/research/ForResearchers/FundingOpportunities/ResearchGrants/%3C/a">The Cystic Fibrosis Foundation</a>:&nbsp;The CF Foundation offers competitive awards for research related to cystic fibrosis. Studies may be carried out at the subcellular, cellular, animal, or patient levels. Two of these funding mechanisms include Pilot and Feasibility Awards and Research Grants.</li>
<li><a href="http://www.ataxia.org/research/ataxia-research-grants.aspx">The National Ataxia Foundation</a>:&nbsp;The National Ataxia Foundation (NAF) is committed to funding the best science relevant to hereditary and sporadic types of ataxia in both basic and translational research. NAF invites research applications from U.S.A. and International non-profit and for-profit institutions.</li>
<li><a href="http://www.marchofdimes.com/research-grants.aspx">The March of Dimes</a>:&nbsp;In keeping with its mission the March of Dimes research portfolio funds many different areas of research on topics related to preventing birth defects, premature birth and infant mortality.</li>
<li><a href="https://www.ata.org/research-toward-cure">The American Tinnitus Association</a>:&nbsp;The American Tinnitus Association Research Grant Program financially supports scientific studies investigating tinnitus. Studies must be directly concerned with tinnitus and contribute to ATA&rsquo;s goal of finding a cure.</li>
<li><a href="http://www.abta.org/brain-tumor-research/research-grants/">American Brain Tumor Association</a>:&nbsp;The American Brain Tumor Association provides multiple grants for scientists doing research in or around the field of brain tumor research.</li>
<li><a href="http://www.cancer.org/research/applyforaresearchgrant/">American Cancer Society</a>:&nbsp;The American Cancer Society also offers grants that support the clinical and/or research training of health professionals. These Health Professional Training Grants promote excellence in cancer prevention and control by providing incentive and support for highly qualified individuals in outstanding training programs or responsible for training.</li>
<li><a href="https://www.thrasherresearch.org/default.aspx">Thrasher Research Fund</a>:&nbsp;The Thrasher Research Fund provides grants for pediatric medical research. The Fund seeks to foster an environment of creativity and discovery aimed at finding solutions to children&rsquo;s health problems. The Fund awards grants for research that offers substantial promise for meaningful advances in prevention and treatment of children&rsquo;s diseases, particularly research that offers broad-based​ applications.</li>
<li><a href="http://foundation4pt.org/apply-for-funding/research-grants/">Foundation for Physical Therapy</a>:&nbsp;The Foundation supports research projects in any patient care specialty.</li>
<li><a href="http://www.ocfoundation.org/research.aspx">International OCD Foundation</a>:&nbsp;The IOCDF awards grants to investigators whose research focuses on the nature, causes and treatment of OCD and related disorders.</li>
<li><a href="http://ww5.komen.org/ResearchGrants/FundingOpportunities.html">Susan G. Komen</a>:&nbsp;Susan G. Komen sustains a strong commitment to supporting research that will identify and deliver cures for breast cancer.</li>
<li><a href="http://www.aacr.org/research/research/Pages/Default.aspx#.VRsCCTvF-OM">American Association for Cancer Research</a>:&nbsp;The AACR promotes and supports the highest quality cancer research. The AACR has been designated as an organization with an approved NCI* peer review and funding system.</li>
<li><a href="http://www.thyroid.org/thyroid-physicians-professionals/research-grants-thyroidology/">American Thyroid Foundation</a>:&nbsp;The ATA is committed to supporting research into better ways to diagnose and treat thyroid disease.</li>
<li><a href="http://faer.org/research-grants/">The Foundation for Anesthesia Education and Research</a>:&nbsp;The FAER provides research grant funding for anesthesiologists and anesthesiology trainees to gain additional training in basic science, clinical and translational, health services and education research.</li>
<li><a href="http://www.alz.org/research/alzheimers_grants/types_of_grants.asp">The Alzheimer&rsquo;s Association</a>:&nbsp;The Alzheimer&rsquo;s Association funds a wide variety of investigations by scientists at every stage of their careers. Each grant is designed to meet the needs of the field and to introduce fresh ideas in Alzheimer&rsquo;s research.</li>
<li><a href="http://www.curearthritis.org/research-grant-application/">The Arthritis National Research Foundation</a>:&nbsp;The Arthritis National Research Foundation seeks to move arthritis research forward to find new treatments and to cure arthritis.</li>
<li><a href="http://www.hdfoundation.org/funding/grants.php">Hereditary Disease Foundation</a>:&nbsp;The focus of the Hereditary Disease Foundation is on Huntington&rsquo;s disease. Support will be for research projects that will contribute to identifying and understanding the basic defect in Huntington&rsquo;s disease. Areas of interest include trinucleotide expansions, animal models, gene therapy, neurobiology and development of the basal ganglia, cell survival and death, and intercellular signaling in striatal neurons.</li>
<li><a href="http://www.childrensleukemia.org/researchgrants.html">The Childrens Leukemia Research Association</a>:&nbsp;The objective of the CLRA is to direct the funds of the Association into the most promising leukemia research projects, and where funding would not duplicate other funding sources.</li>
<li><a href="http://www.apdaparkinson.org/research/research-grant/">The American Parkinson Disease Association</a>:&nbsp;The APDA offers grants of up to $50,000 for Parkinson disease research to scientists affiliated with U.S. research institutions.</li>
<li><a href="http://www.marykayfoundation.org/pages/CancerGrantProgram.aspx">The Mary Kay Foundation</a>:&nbsp;The Mary Kay Foundation offers grants to select doctors and medical scientists for research focusing on curing cancers that affect women.</li>
<li><a href="http://www.ccfa.org/science-and-professionals/research/grants-fellowships/">The Crohn&rsquo;s &amp; Colitis Foundation of America</a>:&nbsp;The CCFA is a leading funder of basic and clinical research in Inflammatory Bowel Diseases. CCFA supports research that increases understanding of the etiology, pathogenesis, therapy, and prevention of Crohn&rsquo;s disease and ulcerative colitis.</li>
<li><a href="http://www.avonfoundation.org/grants/breast-cancer/research-grant-guidelines/">The Avon Foundation for Women</a>:&nbsp;Grants from the Avon Foundation go to develop new strategies to prevent breast cancer and to researching the science behind breast cancer to increase understanding.</li>
<li><a href="http://www.pdf.org/en/grant_funding_irg">The International Research Grants Program</a>:&nbsp;The IRGP seeks to promote research that will have a major impact in developing knowledge of Parkinson&rsquo;s disease. Effort is made to promote projects that have little hope of securing traditional funding.</li>
<li><a href="http://www.gastro.org/research-funding">American Gastroenterological Association</a>:&nbsp;The AGA offers multiple grants for research advancing the science and practice of Gastroenterology.</li>
<li><a href="http://www.wilsonsociety.org/awards/wosawards.html">Wilson Ornithological Society Research Grants</a>:&nbsp;The Wilson Ornithological Society Research Grants offers up to four grants of $1500 dollars for work in any area of ornithology.</li>
<li><a href="http://www.obesity.org/about-us/early-career-research-grants.htm">The Obesity Society</a>:&nbsp;The Obesity Society offers grants of up to $25,000 dollars to members doing research in areas related to obesity.</li>
<li><a href="http://www.sjogrens.org/home/research-programs/research-grants">The Sj&ouml;gren&rsquo;s Syndrome Foundation</a>:&nbsp;The SSF Research Grants Program places a high priority on both clinical and basic scientific research into the cause, prevention, detection, treatment, and cure of Sj&ouml;gren&rsquo;s.</li>
<li><a href="http://www.melanoma.org/research-center/research-grants/the-grant-process">The Melanoma Research Foundation</a>:&nbsp;The MRF&rsquo;s Research Grant Program emphasizes both basic and clinical research projects that explore innovative approaches to understanding melanoma and its treatment.</li>
<li><a href="http://www.aascu.org/GRCinfo/Grant_Search/" title="Grant Resource Center (GRC)">GRC</a>&nbsp;- Run by the American Association of State Colleges and Universities (AASCU), the Grant Resource Center includes a database "customized to smaller institutions, and staff assistance," according to one user. A paid institutional membership is required for access.</li>
<li><a href="http://www.library.illinois.edu/iris/" title="IRIS">IRIS</a>&nbsp;- The Illinois Research Information Service is free for the University of Illinois (UI) community. Outside the UI system, a paid institutional subscription is needed for access.</li>
<li><a href="http://www.infoed.org/new_spin/spin.asp" title="Sponsored Programs Information Network (SPIN)">SPIN</a>&nbsp;- Run by InfoEd International, SPIN (the Sponsored Programs Information Network) claims to be the most widely used funding opportunity database in the world. An institutional subscription is required for access.</li>
<li><a href="http://fundingopps.cos.com/" title="Community of Science (COS )">COS</a>&nbsp;- Funding Opportunities. Community of Science claims the "largest, most comprehensive database of available funding," with 700 member institutions. Individuals can register free, but this won't get you access to the funding database.</li>
<li><a href="http://www.researchresearch.com/" title="ResearchResearch">ResearchResearch</a>&nbsp;- Based in London, ResearchResearch provides an international option for people seeking research-funding programs. A paid subscription is required for access.</li>
</ol>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27070/venn-diagrams-on-r-studio</guid>
	<pubDate>Mon, 25 Apr 2016 16:22:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27070/venn-diagrams-on-r-studio</link>
	<title><![CDATA[Venn Diagrams on R Studio]]></title>
	<description><![CDATA[<h3>First step: Install &amp; load &ldquo;VennDiagram&rdquo; package.</h3>
<pre><code><span># install.packages('VennDiagram')</span>
<span>library</span><span>(</span><span>VennDiagram</span><span>)</span>
</code></pre>
<h3>Second step: Load data</h3>
<p>Add filepath if &ldquo;catdoge.csv&rdquo; is not in working-directory.</p>
<pre><code><span>d</span> <span>&lt;-</span> <span>read.csv</span><span>(</span><span>"catdoge.csv"</span><span>)</span></code><br><br></pre><p>Address of the bookmark: <a href="http://rstudio-pubs-static.s3.amazonaws.com/13301_6641d73cfac741a59c0a851feb99e98b.html" rel="nofollow">http://rstudio-pubs-static.s3.amazonaws.com/13301_6641d73cfac741a59c0a851feb99e98b.html</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27463/bpipe-a-tool-for-running-and-managing-bioinformatics-pipelines</guid>
	<pubDate>Sat, 21 May 2016 22:42:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27463/bpipe-a-tool-for-running-and-managing-bioinformatics-pipelines</link>
	<title><![CDATA[Bpipe - a tool for running and managing bioinformatics pipelines]]></title>
	<description><![CDATA[<p>Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'.</p>
<ul>
<li>January 20th, 2016 - New! Bpipe 0.9.9 released!</li>
<li>Download <a href="http://download.bpipe.org/versions/bpipe-0.9.9.tar.gz">latest</a>, <a href="http://download.bpipe.org">all</a></li>
<li><a href="http://docs.bpipe.org">Documentation</a></li>
<li><a href="https://groups.google.com/forum/#%21forum/bpipe-discuss">Mailing List</a> (Google Group)</li>
</ul>
<p>Bpipe has been published in <a href="http://bioinformatics.oxfordjournals.org/content/early/2012/04/11/bioinformatics.bts167.abstract">Bioinformatics</a>! If you use Bpipe, please cite:</p>
<p><em>Sadedin S, Pope B &amp; Oshlack A, Bpipe: A Tool for Running and Managing Bioinformatics Pipelines, Bioinformatics</em></p><p>Address of the bookmark: <a href="http://docs.bpipe.org/" rel="nofollow">http://docs.bpipe.org/</a></p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/2759/dynamic-programming-alignment</guid>
	<pubDate>Thu, 22 Aug 2013 09:38:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/2759/dynamic-programming-alignment</link>
	<title><![CDATA[Dynamic Programming Alignment]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/EWJnDMKBEv0" frameborder="0" allowfullscreen></iframe>lecture 9, Chem. C100, Spring 2013, UCLA]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32465/tetra-nucleotide-analysis</guid>
	<pubDate>Thu, 04 May 2017 05:07:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32465/tetra-nucleotide-analysis</link>
	<title><![CDATA[Tetra-Nucleotide Analysis]]></title>
	<description><![CDATA[<p>A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride&nbsp;<em>et al.</em>&nbsp;(2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the information of whole genome, it is evident that it cannot replace other alignment-based phylogenetic methods such as&nbsp;<a href="https://chunlab.wordpress.com/orthoani/">OrthoANI</a>&nbsp;or&nbsp;16S rRNA phylogeny. However, TNA can be useful for&nbsp;phylogenetic characterization when whole genome or 16S rRNA gene information is not available. For example, a partial genomic fragment obtained from a metagenome can be identified by TNA (Teeling&nbsp;<em>et al.</em>, 2004). TNA is also fast enough that it can be&nbsp;used&nbsp;as a search engine against a large genome database.</p><p>Address of the bookmark: <a href="https://chunlab.wordpress.com/tetra-nucleotide-analysis/" rel="nofollow">https://chunlab.wordpress.com/tetra-nucleotide-analysis/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/17885/international-conference-on-bioinformatics-models-methods-and-algorithms</guid>
	<pubDate>Sun, 05 Oct 2014 11:42:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/17885/international-conference-on-bioinformatics-models-methods-and-algorithms</link>
	<title><![CDATA[International Conference on Bioinformatics Models, Methods and Algorithms]]></title>
	<description><![CDATA[<p><span>The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together researchers and practitioners interested in the application of computational systems and information technologies to the field of molecular biology, including for example the use of statistics and algorithms to understanding biological processes and systems, with a focus on new developments in genome bioinformatics and computational biology. Areas of interest for this community include sequence analysis, biostatistics, image analysis, scientific data management and data mining, machine learning, pattern recognition, computational evolutionary biology, computational genomics and other related fields.</span></p>
<p><span><span>Position Paper Submission Extension:</span><span>&nbsp;</span><span>October 9, 2014</span><span>&nbsp;</span><br><span>Regular Paper Authors Notification:</span><span>&nbsp;</span><span>November 3, 2014</span><span>&nbsp;</span><br><span>Position Paper Authors Notification:</span><span>&nbsp;</span><span>November 6, 2014</span><span>&nbsp;</span><br><span>Regular and Position Paper Camera Ready and Registration:</span><span>&nbsp;</span><span>November 17, 2014</span><span>&nbsp;</span></span></p><p>Address of the bookmark: <a href="http://www.bioinformatics.biostec.org/" rel="nofollow">http://www.bioinformatics.biostec.org/</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35800/scikit-bio%E2%84%A2-is-an-open-source-bsd-licensed-python-package-providing-data-structures-algorithms-and-educational-resources-for-bioinformatics</guid>
	<pubDate>Fri, 02 Mar 2018 04:29:47 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35800/scikit-bio%E2%84%A2-is-an-open-source-bsd-licensed-python-package-providing-data-structures-algorithms-and-educational-resources-for-bioinformatics</link>
	<title><![CDATA[scikit-bio™ is an open-source, BSD-licensed, python package providing data structures, algorithms, and educational resources for bioinformatics.]]></title>
	<description><![CDATA[<p><span>scikit-bio is currently in beta. We are very actively developing it, and&nbsp;</span><strong>backward-incompatible interface changes can and will arise</strong><span>. To avoid these types of changes being a surprise to our users, our public APIs are decorated to make it clear to users when an API can be relied upon (stable) and when it may be subject to change (experimental). See the&nbsp;</span><a href="https://github.com/biocore/scikit-bio/blob/master/doc/source/user/api_stability.rst">API stability docs</a><span>&nbsp;for more details, including what we mean by&nbsp;</span><em>stable</em><span>&nbsp;and&nbsp;</span><em>experimental</em><span>&nbsp;in this context.</span></p><p>Address of the bookmark: <a href="http://scikit-bio.org/" rel="nofollow">http://scikit-bio.org/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/2002/ibl-laboratory</guid>
  <pubDate>Mon, 12 Aug 2013 02:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[IBL laboratory]]></title>
  <description><![CDATA[
<p>The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative agents, heavy metals, or drastic changes in nutrients availability. The genome-wide responses studied with the "omics" techniques (transcriptomics, proteomics, metabolomics and genetics) generate a wealth of experimental data, which are processed, archived, integrated and represented as working models through bioinformatics and mathematics. </p>

<p>Link : http://www-dsv.cea.fr/en/instituts/institut-de-biologie-et-de-technologies-de-saclay-ibitec-s/unites-de-recherche/service-de-biologie-integrative-et-genetique-moleculaire-sbigem/laboratoire-de-biologie-integrative-lbi/presentation__1</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/938/list-of-bioinformatics-and-computational-biology-journals</guid>
	<pubDate>Wed, 17 Jul 2013 02:36:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/938/list-of-bioinformatics-and-computational-biology-journals</link>
	<title><![CDATA[List of Bioinformatics and Computational Biology Journals]]></title>
	<description><![CDATA[<p>Hi Bioinformatician and Computational Biologist, this is the comprehensive list of all (?) the bioinformatics and computational biology&nbsp;journals. Please update me if you know any other good journals related with our domains. Feel free to add your comments and suggestions. You comments will be helpful for others...</p><p>*The journals are not listed in any ascending, descending, or impact factors oders.&nbsp;</p><p><a href="http://bioinformatics.oxfordjournals.org/" target="_blank">Bioinformatics</a>&nbsp;</p><p><a href="http://www.liebertpub.com/overview/journal-of-computational-biology/31/" target="_blank">Journal of Computational Biology</a></p><p><a href="http://bib.oxfordjournals.org/" target="_blank">Briefings in Bioinformatics</a></p><p><a href="http://www.bioinfo.de/isb/" target="_blank">In Silico Biology</a></p><p><a href="http://www.cell.com/structure/home" target="_blank">Structure</a></p><p><a href="http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1469-896X" target="_blank">Protein Science</a></p><p>Protein Engineering</p><p><a href="http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1615-9861" target="_blank">Proteomics</a></p><p><a href="http://nar.oxfordjournals.org/" target="_blank">Nucleic Acids Research</a></p><p><a href="http://www.sciencedirect.com/science/journal/01677799" target="_blank">Trends in Biotechnology</a></p><p><a href="http://www.pnas.org/" target="_blank">Proceedings of the National Academy of Sciences</a></p><p>Folding and Design</p><p><a href="http://genomebiology.com/" target="_blank">Genome Biology</a></p><p>Journal of Biomedical Informatics</p><p><a href="http://www.bioinformation.net/" target="_blank">Bioinformation</a></p><p><a href="http://www.ripublication.com/jcib.htm" target="_blank"><span>Journal of Computational Intelligence in Bioinformatics</span></a></p><p>Journal of Structural and Functional Genomics</p><p><a href="http://www.journals.elsevier.com/journal-of-molecular-graphics-and-modelling" target="_blank">Journal of Molecular Graphics and Modelling</a></p><p><a href="http://www.academicpress.com/mbe" target="_blank">Metabolic Engineering</a></p><p>Computers &amp; Chemistry</p><p><a href="http://www.journals.elsevier.com/artificial-intelligence-in-medicine" target="_blank">Artificial Intelligence in Medicine</a></p><p><a href="http://www.karger.com/" target="_blank">Journal of Biomedical Science</a></p><p><a href="http://www.journals.elsevier.com/artificial-intelligence" target="_blank">Artificial Intelligence</a></p><p><a href="http://www.springer.com/computer/ai/journal/10994" target="_blank">Machine Learning</a></p><p>Applied Bioinformatics</p><p>Applied Genomics and Proteomics</p><p><a href="http://www.biomedcentral.com/bmcbioinformatics/" target="_blank">BMC Bioinformatics</a></p><p><a href="http://users.comcen.com.au/~journals/bioinfo.htm" target="_blank">Online Journal of Bioinformatics (OJB)</a></p><p><a href="http://psb.stanford.edu/psb-online/" target="_blank">PSB On-Line Proceedings</a></p><p>Bioinformatics: Information Technology &amp; Systems (BITS)</p><p>Data Mining and Knowledge Discovery</p><p>The EMBO Journal</p><p>Current Opinions in Structural Biology</p><p><a href="http://www.horizonpress.com/backlist/jmmb/" target="_blank">Journal of Molecular Microbiology and Biotechnology</a></p><p><a href="http://www.nature.com/nature/index.html" target="_blank">Nature</a></p><p>Nature Structural Biology</p><p><a href="http://jmlr.org/" target="_blank">Journal of Machine Learning Research</a></p><p><a href="http://www.nature.com/ng/index.html" target="_blank">Nature Genetics</a></p><p>Current Opinion in Genetics &amp; Development</p><p><a href="http://www.nature.com/nbt/index.html" target="_blank">Nature Biotechnology</a></p><p>Trends in Biochemical Sciences</p><p><a href="http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1097-0134" target="_blank">Proteins: Structure, Function, and Genetics</a></p><p><a href="http://www.nature.com/ncb/index.html" target="_blank">Nature Cell Biology</a></p><p>Trends in Genetics</p><p><a href="http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1439-7633" target="_blank">ChemBioChem</a></p><p>Trends in Molecular Medicine</p><p><a href="http://link.springer.com/" target="_blank">Journal of Molecular Modelling</a></p><p>Trends in Pharmacological Sciences</p><p>Drug Discovery Today</p><p><a href="http://highwire.stanford.edu/lists/freeart.dtl" target="_blank">Others Free Online Full-text Journals</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/1467/biopython-cookbook</guid>
	<pubDate>Thu, 08 Aug 2013 06:43:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/1467/biopython-cookbook</link>
	<title><![CDATA[BioPython Cookbook]]></title>
	<description><![CDATA[<p>If you are planning to start learning BioPython ( it does not bite but&nbsp;swallow :P just kidding) then this online cookbook will be really helpful for you.</p><p>http://biopython.org/DIST/docs/tutorial/Tutorial.html</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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