BOL: Related items

Landry Lab

Thu, 17 Jul 2014 14:33:57 -0500

EVOLUTIONARY AND INTEGRATIVE CELL BIOLOGY

Our research is at the crossroad between cell biology, ecological genomics, systems biology, molecular evolution and population genetics. We study the architecture and evolution of protein and signalling networks.

More at http://landrylab.ibis.ulaval.ca/

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates

Abhimanyu Singh — Thu, 16 May 2019 00:17:39 -0500

multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user-specified set of phage genomes. This tool incorporates a de novo phage gene-calling algorithm and assigns putative functions to gene calls using protein-, virus-, and phage-centric databases.

Address of the bookmark: https://github.com/carolzhou/multiPhATE

J. Aires de Sousa Research Group

Wed, 12 Mar 2014 09:57:25 -0500

We are involved in the development of methods and software in chemoinformatics. Current main projects are:

1.automatic learning of chemical reactivity and metabolism,
2.simulation of NMR spectra,
3.modelling of properties of ionic liquids, and
4.representation of molecular chirality.

More at http://joao.airesdesousa.com/

Seq: A high-performance, Pythonic language for bioinformatics

Rahul Nayak — Sat, 23 Nov 2019 08:58:12 -0600

Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves performance comparable to (and in many cases better than) C/C++.

Learn more by following the tutorial or from the cookbook.

Address of the bookmark: https://seq-lang.org

Basic Notions in Molecular Biology and Genetics

Antony Campos — Sun, 16 Mar 2014 18:15:29 -0500

This is a presentation about some fundamental concepts applied in molecular biology and genetics, also it contains a little bit of the experience that one of our members has gained in his years of undergraduate state related to molecular cloning. Our research group, called "BIOPHARM" (Acronymus of Laboratory of Bioinformatics and Pharmacogenetics), was stablished on 2007, took it a bit of years to make it real this initative, although, nowadays, we're working on some projects involved in those fields. This research group belongs to the Department of Biochemistry, Faculty of Pharmacy and Biochemistry, Universidad Nacional Mayor de San Marcos, Lima, Perú. We try to encourage research initiatives, helping them and also we use to participate in differents courses, congress and symposiums.

Bioinformatics related group

Rahul Agarwal — Sun, 09 Feb 2020 03:17:16 -0600

FaBI emerged from the respective groups of the four founding societies GI (German Informatics Society), DECHEMA (Society for Chemical Engineering and Biotechnology), GBM (Society for Biochemistry and Molecular Biology) and GDCh (German Chemical Society). In fall 2015, the GMDS (German Society for Medical Informatics, Biometry, and Epidemiology) joined FaBI. FaBI represents more than 750 members today and considers itself as a joint representation of interests of bioinformatics research in Germany and as an interlocutor for politics, economy, and society aiming at a strong informatics-based life science research.

Address of the bookmark: https://bioinformatik.de/en/bioinformatics-in-germany/research/research-groups.html

Gerstein Lab

Wed, 19 Mar 2014 12:48:20 -0500

The focus of the Gerstein Lab is interpreting personal genomes, particularly in relation to disorders, such as cancer. This endeavor has a number of related aspects described below. Moreover, the approaches we take have broad connections to a variety of data-intensive fields, within the emerging discipline of data science.

Personal Genome Variation: SVs
Human Genome Annotation: Processing Next-Gen Sequencing Data
Comparative Genomics: Pseudogenes as Molecular Fossils
Protein Structure and Function: Macromolecular Motions
Analysis of Diverse Networks
Genomics at the Forefront of Data Science

Lab page: http://www.gersteinlab.org/

RGCB recruitment notification for bioinformatician !

Tue, 25 Aug 2020 00:25:13 -0500

RGCB Jobs 2020: RGCB released the recruitment notification to hire the candidates who completed B.Tech, M.Sc for 01 Bioinformatician Posts. The eligible candidates can apply for the post through online from 22-08-2020 to 08-09-2020. These selected candidates will be placed as Bioinformatician in Kerala. To know more details such as salary (pay scale), age limit, application fee, application process and more for RGCB recruitment 2020 by clicking apply button.
Organization Name : Rajiv Gandhi Centre for Biotechnology
Post Name : Bioinformatician
No of Vacancy : 01 Posts
Salary : Rs.22,000 (Per Month)
Last Date to Apply : 08-09-2020

More at https://rgcb.res.in/jobs.php

Bioinformatics PhD at University of Calcutta

Mon, 31 Mar 2014 08:41:04 -0500

University of Calcutta
Department of Biophysics, Molecular Biology & Bioinformatics

Applications are invited for admission to the Ph.D. programme in the Department of Biophysics, Molecular Biology & Bioinformatics, University of Calcutta for the year 2014 from eligible candidates who would be placed under the departmental teachers or affiliated research supervisors for the pursuance of their Ph.D. programme.

Candidates are requested to download the Ph.D. admission test application form from the University website and apply in the prescribed proforma by paying Rs. 100/- through a challan available through different University Cash counters. The challan is to be duly forwarded through the Head, Department of Biophysics, Molecular Biology & Bioinformatics, University of Calcutta.

The completed application form with a copy of the paid challan is to be submitted to the office of the Department by April 16, 2014.

Syllabus for the Test: The questions for the admission test and interview will be based on topics in the following areas:

Mathematical methods, Molecular and Cellular Biophysics, Molecular and Cell Biology, Biochemistry, Genetics, Plant Biology, Developmental biology, Neurobiology, Biotechnology and Bioinformatics.

However, the interview will be primarily based on the research emphasis of the candidate. Candidates must clearly indicate the program in which they want to apply.

Date of Admission test : April 22, 2014 (Tuesday)

Date of publication of selection list for the interview : April 22, 2014(Tuesday)

Date of Interview : April 23, 2014 (Wednesday)

Number of vacancies for the Ph.D. programme : 12

Reservation policy will be followed as per rules.

Candidates with valid NET/GATE/M.Phil. or equivalent qualifications are not required to appear at the admission test but would need to qualify in the interview.

http://www.caluniv.ac.in/admission%20notice/PHD_BIO_PHYSICS.pdf

Applied Computational Genomics Course at UU: Spring 2020

Shruti Paniwala — Wed, 23 Dec 2020 03:30:44 -0600

This course will provide a comprehensive introduction to fundamental concepts and experimental approaches in the analysis and interpretation of experimental genomics data. It will be structured as a series of lectures covering key concepts and analytical strategies. A diverse range of biological questions enabled by modern DNA sequencing technologies will be explored including sequence alignment, the identification of genetic variation, structural variation, and ChIP-seq and RNA-seq analysis. Students will learn and apply the fundamental data formats and analysis strategies that underlie computational genomics research. The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses.

Address of the bookmark: https://github.com/quinlan-lab/applied-computational-genomics