More at http://bioinf.spbau.ru/quast

http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformatics.btt086.long

Address of the bookmark: http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformatics.btt086.long

1. National Science Foundation: For the love of science! Head here when searching for ways to pay for that gargantuan geology or bigtime biology project. And other disciplines, of course.
2. Alexander von Humboldt Foundation: Humbolt fellows embody the spirit of science and leadership alike, and the organization sponsors thinkers in Germany and abroad alike.
3. National Parks Foundation: Americans who want to preserve their country’s gorgeous parks and trails pitch projects to this governing body, concerned largely with ecology and accessibility issues.
4. Alfred P. Sloan Foundation: Money is available here throughout the year, covering science and engineering and their overlaps with civics, education, and economics.
5. The Whitehall Foundation: The Whitehall Foundation, through its program of grants and grants-in-aid, assists scholarly research in the life sciences. It is the Foundation’s policy to assist those dynamic areas of basic biological research that are not heavily supported by Federal Agencies or other foundations with specialized missions.
6. Human Frontier Science Program: Research grants from the Human Frontier Science Program are provided for teams of scientists from different countries who wish to combine their expertise in innovative approaches to questions that could not be answered by individual laboratories.
7. The U.S. Small Business Administration: The U.S. Small Business Administration offers research grants to small businesses that are engaged in scientific research and development projects that meet federal R&D objectives and have a high potential for commercialization.
8. The Welch Foundation: The Welch Foundation provides grants for a minimum of $60,000 in funding to support research in chemistry by a full-time tenured or tenure-track faculty member who serves as principal investigator. Applications are restricted to universities, colleges, or other educational institutions located within the state of Texas.
9. The Leakey Foundation: The Leakey Foundation offers research grants of up to $25,000 to doctoral and post-doctoral students as well as senior scientists, for research related specifically to human origins.
10. American College of Sports Medicine: The American College of Sports Medicine offers several possible grants to research students in the areas of general and applied science.
11. BD Biosciences: BD Biosciences Research Grants* aim to reward and enable important research by providing vital funding to scientists pursuing innovative experiments that advance the scientific understanding of disease. This ongoing program includes grants for immunology and stem cell research, totaling $240,000 annually in BD Biosciences research reagents.
12. Sigma Xi: The Sigma Xi program awards grants for research in areas of science, engineering, astronomy and vision.
13. The United Engineering Foundation: The United Engineering Foundation advances the engineering arts and sciences for the welfare of humanity. It supports engineering and education by, among other means, making grants.
14. National Institutes of Health: Foreign and American medical professionals hoping to advance their research might want to consider one of these prestigious (and generous) endowments.
15. Whitaker International Program: Biomedical engineering’s global reach serves as this organization’s focus, so applications here need to open themselves up to international institutions and applications.
16. U.S. National Library of Medicine: From tech to small businesses, the USNLM’s funding programs cover a diverse range of fields that feed into medicine.
17. American Heart Association: Most of the AHA’s research involves cardiovascular disease and stroke, with funding in these areas available in the winter and the summer.
18. Society for Women’s Health Research: Female engineers and scientists benefit from these grants meant to support anything that improves women’s health and education on a global scale.
19. Damon Runyon Cancer Research Foundation: Every cent donated to the DRCRF directly feeds into fellowships and awards bringing humanity closer to cancer cures and improved prevention regimens.
20. Burroughs Wellcome Fund: Emerging scientists working in largely underrecognized and underfunded biomedical fields are the main recipients of this private foundation’s money.
21. The Foundation for Alcohol Research: As one can probably assume from the name, The Foundation for Alcohol Research contributes to projects studying how alcohol impacts human physical and mental health.
22. Alex’s Lemonade Stand: These grants go towards doctors, nurses, and medical researchers concerned with curing childhood cancer.
23. National Cancer Institute: Thanks to a little help from their friends in Congress, the National Cancer Institute have $4.9 billion to share with medical science.
24. Bush Foundation Fellowship Program: Leadership’s many forms are the main focus of the BFFP, who give money to folks dedicated to improving their communities.
25. The David & Lucile Packard Foundation: Nonprofit organizations dedicated to growing education, charities, health, and other social justice causes should consider seeing what money they can land through this foundation.
26. American Federation for Aging Research: AFAR provides up to $100,000 for a one- to two-year award to junior faculty (M.D.s and Ph.D.s) to conduct research that will serve as the basis for longer term research efforts in the areas of Biomedical and clinical research.
27. The Muscular Dystrophy Association: The MDA is pursuing the full spectrum of research approaches that are geared toward combating neuromuscular diseases. MDA also helps spread this scientific knowledge and train the next generation of scientific leaders by funding national and international research conferences and career development grants.
28. The Cystic Fibrosis Foundation: The CF Foundation offers competitive awards for research related to cystic fibrosis. Studies may be carried out at the subcellular, cellular, animal, or patient levels. Two of these funding mechanisms include Pilot and Feasibility Awards and Research Grants.
29. The National Ataxia Foundation: The National Ataxia Foundation (NAF) is committed to funding the best science relevant to hereditary and sporadic types of ataxia in both basic and translational research. NAF invites research applications from U.S.A. and International non-profit and for-profit institutions.
30. The March of Dimes: In keeping with its mission the March of Dimes research portfolio funds many different areas of research on topics related to preventing birth defects, premature birth and infant mortality.
31. The American Tinnitus Association: The American Tinnitus Association Research Grant Program financially supports scientific studies investigating tinnitus. Studies must be directly concerned with tinnitus and contribute to ATA’s goal of finding a cure.
32. American Brain Tumor Association: The American Brain Tumor Association provides multiple grants for scientists doing research in or around the field of brain tumor research.
33. American Cancer Society: The American Cancer Society also offers grants that support the clinical and/or research training of health professionals. These Health Professional Training Grants promote excellence in cancer prevention and control by providing incentive and support for highly qualified individuals in outstanding training programs or responsible for training.
34. Thrasher Research Fund: The Thrasher Research Fund provides grants for pediatric medical research. The Fund seeks to foster an environment of creativity and discovery aimed at finding solutions to children’s health problems. The Fund awards grants for research that offers substantial promise for meaningful advances in prevention and treatment of children’s diseases, particularly research that offers broad-based​ applications.
35. Foundation for Physical Therapy: The Foundation supports research projects in any patient care specialty.
36. International OCD Foundation: The IOCDF awards grants to investigators whose research focuses on the nature, causes and treatment of OCD and related disorders.
37. Susan G. Komen: Susan G. Komen sustains a strong commitment to supporting research that will identify and deliver cures for breast cancer.
38. American Association for Cancer Research: The AACR promotes and supports the highest quality cancer research. The AACR has been designated as an organization with an approved NCI* peer review and funding system.
39. American Thyroid Foundation: The ATA is committed to supporting research into better ways to diagnose and treat thyroid disease.
40. The Foundation for Anesthesia Education and Research: The FAER provides research grant funding for anesthesiologists and anesthesiology trainees to gain additional training in basic science, clinical and translational, health services and education research.
41. The Alzheimer’s Association: The Alzheimer’s Association funds a wide variety of investigations by scientists at every stage of their careers. Each grant is designed to meet the needs of the field and to introduce fresh ideas in Alzheimer’s research.
42. The Arthritis National Research Foundation: The Arthritis National Research Foundation seeks to move arthritis research forward to find new treatments and to cure arthritis.
43. Hereditary Disease Foundation: The focus of the Hereditary Disease Foundation is on Huntington’s disease. Support will be for research projects that will contribute to identifying and understanding the basic defect in Huntington’s disease. Areas of interest include trinucleotide expansions, animal models, gene therapy, neurobiology and development of the basal ganglia, cell survival and death, and intercellular signaling in striatal neurons.
44. The Childrens Leukemia Research Association: The objective of the CLRA is to direct the funds of the Association into the most promising leukemia research projects, and where funding would not duplicate other funding sources.
45. The American Parkinson Disease Association: The APDA offers grants of up to $50,000 for Parkinson disease research to scientists affiliated with U.S. research institutions.
46. The Mary Kay Foundation: The Mary Kay Foundation offers grants to select doctors and medical scientists for research focusing on curing cancers that affect women.
47. The Crohn’s & Colitis Foundation of America: The CCFA is a leading funder of basic and clinical research in Inflammatory Bowel Diseases. CCFA supports research that increases understanding of the etiology, pathogenesis, therapy, and prevention of Crohn’s disease and ulcerative colitis.
48. The Avon Foundation for Women: Grants from the Avon Foundation go to develop new strategies to prevent breast cancer and to researching the science behind breast cancer to increase understanding.
49. The International Research Grants Program: The IRGP seeks to promote research that will have a major impact in developing knowledge of Parkinson’s disease. Effort is made to promote projects that have little hope of securing traditional funding.
50. American Gastroenterological Association: The AGA offers multiple grants for research advancing the science and practice of Gastroenterology.
51. Wilson Ornithological Society Research Grants: The Wilson Ornithological Society Research Grants offers up to four grants of $1500 dollars for work in any area of ornithology.
52. The Obesity Society: The Obesity Society offers grants of up to $25,000 dollars to members doing research in areas related to obesity.
53. The Sjögren’s Syndrome Foundation: The SSF Research Grants Program places a high priority on both clinical and basic scientific research into the cause, prevention, detection, treatment, and cure of Sjögren’s.
54. The Melanoma Research Foundation: The MRF’s Research Grant Program emphasizes both basic and clinical research projects that explore innovative approaches to understanding melanoma and its treatment.
55. GRC - Run by the American Association of State Colleges and Universities (AASCU), the Grant Resource Center includes a database "customized to smaller institutions, and staff assistance," according to one user. A paid institutional membership is required for access.
56. IRIS - The Illinois Research Information Service is free for the University of Illinois (UI) community. Outside the UI system, a paid institutional subscription is needed for access.
57. SPIN - Run by InfoEd International, SPIN (the Sponsored Programs Information Network) claims to be the most widely used funding opportunity database in the world. An institutional subscription is required for access.
58. COS - Funding Opportunities. Community of Science claims the "largest, most comprehensive database of available funding," with 700 member institutions. Individuals can register free, but this won't get you access to the funding database.
59. ResearchResearch - Based in London, ResearchResearch provides an international option for people seeking research-funding programs. A paid subscription is required for access.

# install.packages('VennDiagram')
library(VennDiagram)

Second step: Load data

Add filepath if “catdoge.csv” is not in working-directory.

d <- read.csv("catdoge.csv")

Address of the bookmark: http://rstudio-pubs-static.s3.amazonaws.com/13301_6641d73cfac741a59c0a851feb99e98b.html

• January 20th, 2016 - New! Bpipe 0.9.9 released!
• Download latest, all
• Documentation
• Mailing List (Google Group)

Bpipe has been published in Bioinformatics! If you use Bpipe, please cite:

Sadedin S, Pope B & Oshlack A, Bpipe: A Tool for Running and Managing Bioinformatics Pipelines, Bioinformatics

Address of the bookmark: http://docs.bpipe.org/

LPI scores are inversely proportional to the phylogenetic distance between database match sequences and the query genome. These scores are useful not only for large-scalede novo predictions of horizontally transferred proteins, but can also serve as an independent quality control test for potential horizontal transfer candidates identified by alternative methods, especially those based on nucleic acid signatures. Candidates having high LPI scores are unlikely to have been horizontally transferred, since they are highly conserved among closely related organisms.

One unique and powerful feature of the DarkHorse HGT Candidate database is the opportunity to explore the phylogenetic background of potential HGT donors as well as recipients. The breadth of the database allows not only query sequences, but also their database match partners to be evaluated for sequence similarity or novelty compared to taxonomically related organisms.

DarkHorse is configurable for varying degrees of phylogenetic granularity and protein sequence conservation. Users should consult the references cited below for a complete explanation of parameter selection and result interpretation. A brief tutorial page is also available on-line.

Address of the bookmark: http://darkhorse.ucsd.edu/download.html

 UPARSE >
OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity measures. UCHIME >
Chimeric sequence detection. PILER >
De novo genome repeat finder. PILER-CR >
Detection of CRISPR repeats in bacterial genomes. QSCORE >
Compare two multiple alignments for benchmarking. PALS >
Whole-genome alignment. PREFAB >
Protein Reference Alignment Database. MSA benchmark collection >
Selected multiple alignment benchmarks in a standardized FASTA format.

Address of the bookmark: http://drive5.com/software.html

http://molbiol-tools.ca/Convert.htm

Address of the bookmark: http://molbiol-tools.ca/Convert.htm

The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses.

The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences. It provides motif discovery algorithms using both probabilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2). In addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding preferred spacings between motifs (SpaMo), predicting the biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known motifs (CentriMo), and analyzing ChIP-seq and other large datasets (MEME-ChIP).

The MEME Suite is comprised of a collection of tools that work together, as shown below. Not all the tools are available as webservices, so to get the full power of the MEME Suite you will need to download and install a local copy of the software. To see what has changed recently you can peruse the release notes.

http://meme-suite.org/

Address of the bookmark: http://meme-suite.org/

TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies.

• The latest TMAP is unsupported. To use a supported version, please see the TMAP version associated with a Torrent Suite release below.

• Get the latest source code:

  git clone git://github.com/iontorrent/TMAP.git
   cd TMAP
   git submodule init
   git submodule update

https://github.com/iontorrent/TS/tree/master/Analysis/TMAP

Address of the bookmark: https://github.com/iontorrent/TS/tree/master/Analysis/TMAP

Interesting scripts within it

urbe@urbo214b[bin] ls                                                        []
-rwxrwxr-x 1 urbe urbe  11K Apr 10 11:41 addCNSToStore
-rwxrwxr-x 1 urbe urbe 575K Apr 10 11:41 addReadsToUnitigs
-rwxrwxr-x 1 urbe urbe 128K Apr 10 11:41 analyzeBest
-rwxrwxr-x 1 urbe urbe 257K Apr 10 11:41 analyzePosMap
-rwxrwxr-x 1 urbe urbe 1,5M Apr 10 11:41 analyzeScaffolds
-rwxrwxr-x 1 urbe urbe 224K Apr 10 11:41 asmOutputFasta
-rwxrwxr-x 1 urbe urbe 448K Apr 10 11:41 asmOutputStatistics
-rwxrwxr-x 1 urbe urbe 2,4K Apr 10 11:41 asmToAGP.pl
-rwxrwxr-x 1 urbe urbe 7,6M Apr 10 11:41 blasr
-rwxrwxr-x 1 urbe urbe 1,6M Apr 10 11:41 bogart
-rwxrwxr-x 1 urbe urbe 183K Apr 10 11:41 bogus
-rwxrwxr-x 1 urbe urbe 272K Apr 10 11:41 bogusness
-rwxrwxr-x 1 urbe urbe 247K Apr 10 11:41 buildPosMap
-rwxrwxr-x 1 urbe urbe 213K Apr 10 11:41 buildRefContigs
-rwxrwxr-x 1 urbe urbe 990K Apr 10 11:41 buildUnitigs
-rwxrwxr-x 1 urbe urbe  18K Apr 10 11:41 ca2ace.pl
-rwxrwxr-x 1 urbe urbe  12K Apr 10 11:41 caqc_help.ini
-rwxrwxr-x 1 urbe urbe  61K Apr 10 11:41 caqc.pl
-rwxrwxr-x 1 urbe urbe  23K Apr 10 11:41 cat-corrects
-rwxrwxr-x 1 urbe urbe  24K Apr 10 11:41 cat-erates
-rwxrwxr-x 1 urbe urbe 1,9M Apr 10 11:41 cgw
-rwxrwxr-x 1 urbe urbe 1,4M Apr 10 11:41 cgwDump
-rwxrwxr-x 1 urbe urbe 204K Apr 10 11:41 chimChe
-rwxrwxr-x 1 urbe urbe 201K Apr 10 11:40 chimera
-rwxrwxr-x 1 urbe urbe 220K Apr 10 11:41 classifyMates
-rwxrwxr-x 1 urbe urbe 201K Apr 10 11:41 classifyMatesApply
-rwxrwxr-x 1 urbe urbe 215K Apr 10 11:41 classifyMatesPairwise
-rwxrwxr-x 1 urbe urbe 366K Apr 10 11:41 computeCoverageStat
-rwxrwxr-x 1 urbe urbe 9,8K Apr 10 11:41 convert-fasta-to-v2.pl
-rwxrwxr-x 1 urbe urbe  48K Apr 10 11:41 convertOverlap
-rwxrwxr-x 1 urbe urbe 119K Apr 10 11:41 convertSamToCA
-rwxrwxr-x 1 urbe urbe  20K Apr 10 11:41 convertToPBCNS
-rwxrwxr-x 1 urbe urbe 197K Apr 10 11:41 correct-frags
-rwxrwxr-x 1 urbe urbe 259K Apr 10 11:41 correct-olaps
-rwxrwxr-x 1 urbe urbe 520K Apr 10 11:41 correctPacBio
-rwxrwxr-x 1 urbe urbe 540K Apr 10 11:41 ctgcns
-rwxrwxr-x 1 urbe urbe 162K Apr 10 11:40 deduplicate
-rwxrwxr-x 1 urbe urbe  37K Apr 10 11:41 demotePosMap
-rwxrwxr-x 1 urbe urbe 1,5M Apr 10 11:41 dumpCloneMiddles
-rwxrwxr-x 1 urbe urbe 124K Apr 10 11:41 dumpPBRLayoutStore
-rwxrwxr-x 1 urbe urbe 1,3M Apr 10 11:41 dumpSingletons
-rwxrwxr-x 1 urbe urbe 171K Apr 10 11:41 erate-estimate
-rwxrwxr-x 1 urbe urbe 221K Apr 10 11:40 estimate-mer-threshold
-rwxrwxr-x 1 urbe urbe 1,5M Apr 10 11:41 extendClearRanges
-rwxrwxr-x 1 urbe urbe 1,3M Apr 10 11:41 extendClearRangesPartition
-rwxrwxr-x 1 urbe urbe 205K Apr 10 11:40 extractmessages
-rwxrwxr-x 1 urbe urbe 7,2M Apr 10 11:41 falcon_sense
-rwxrwxr-x 1 urbe urbe 9,8K Apr 10 11:41 fastaToCA
-rwxrwxr-x 1 urbe urbe 124K Apr 10 11:40 fastqAnalyze
-rwxrwxr-x 1 urbe urbe 137K Apr 10 11:40 fastqSample
-rwxrwxr-x 1 urbe urbe  62K Apr 10 11:40 fastqSimulate
-rwxrwxr-x 1 urbe urbe 121K Apr 10 11:40 fastqSimulate-sort
-rwxrwxr-x 1 urbe urbe 246K Apr 10 11:40 fastqToCA
-rwxrwxr-x 1 urbe urbe 140K Apr 10 11:41 filterOverlap
-rwxrwxr-x 1 urbe urbe 341K Apr 10 11:40 finalTrim
-rwxrwxr-x 1 urbe urbe 228K Apr 10 11:41 fixUnitigs
-rwxrwxr-x 1 urbe urbe 147K Apr 10 11:40 fragmentDepth
-rwxrwxr-x 1 urbe urbe  29K Apr 10 11:41 fragsInVars
-rwxrwxr-x 1 urbe urbe 545K Apr 10 11:41 frgs2clones
-rwxrwxr-x 1 urbe urbe 398K Apr 10 11:40 gatekeeper
-rwxrwxr-x 1 urbe urbe 139K Apr 10 11:40 gatekeeperbench
-rwxrwxr-x 1 urbe urbe 167K Apr 10 11:40 gkpStoreCreate
-rwxrwxr-x 1 urbe urbe 147K Apr 10 11:40 gkpStoreDumpFASTQ
-rwxrwxr-x 1 urbe urbe 184K Apr 10 11:41 greedyFragmentTiling
-rwxrwxr-x 1 urbe urbe 1,6K Apr 10 11:41 greedy_layout_to_IUM
-rwxrwxr-x 1 urbe urbe 142K Apr 10 11:40 initialTrim
-rwxrwxr-x 1 urbe urbe 967K Apr 10 11:41 jellyfish
-rwxrwxr-x 1 urbe urbe 219K Apr 10 11:41 markRepeatUnique
-rwxrwxr-x 1 urbe urbe 273K Apr 10 11:40 markUniqueUnique
-rwxrwxr-x 1 urbe urbe 114K Apr 10 11:40 mercy
-rwxrwxr-x 1 urbe urbe 3,8K Apr 10 11:41 mergeqc.pl
-rwxrwxr-x 1 urbe urbe 422K Apr 10 11:40 merTrim
-rwxrwxr-x 1 urbe urbe 125K Apr 10 11:40 merTrimApply
-rwxrwxr-x 1 urbe urbe 376K Apr 10 11:40 meryl
-rwxrwxr-x 1 urbe urbe 176K Apr 10 11:41 metagenomics_ovl_analyses
-rwxrwxr-x 1 urbe urbe 297K Apr 10 11:41 olap-from-seeds
-rwxrwxr-x 1 urbe urbe 275K Apr 10 11:41 outputLayout
-rwxrwxr-x 1 urbe urbe 229K Apr 10 11:41 overlapInCore
-rwxrwxr-x 1 urbe urbe 144K Apr 10 11:40 overlap_partition
-rwxrwxr-x 1 urbe urbe 179K Apr 10 11:41 overlapStats
-rwxrwxr-x 1 urbe urbe 179K Apr 10 11:41 overlapStore
-rwxrwxr-x 1 urbe urbe 153K Apr 10 11:41 overlapStoreBucketizer
-rwxrwxr-x 1 urbe urbe 175K Apr 10 11:41 overlapStoreBuild
-rwxrwxr-x 1 urbe urbe  33K Apr 10 11:41 overlapStoreIndexer
-rwxrwxr-x 1 urbe urbe  48K Apr 10 11:41 overlapStoreSorter
-rwxrwxr-x 1 urbe urbe 604K Apr 10 11:40 overmerry
lrwxrwxrwx 1 urbe urbe    4 Apr 10 11:41 pacBioToCA -> PBcR
-rwxrwxr-x 1 urbe urbe 131K Apr 10 11:41 PBcR
-rwxrwxr-x 1 urbe urbe 2,9M Apr 10 11:41 pbdagcon
-rwxrwxr-x 1 urbe urbe 1,9M Apr 10 11:41 pbutgcns
-rwxrwxr-x 1 urbe urbe 201K Apr 10 11:40 remove_fragment
-rwxrwxr-x 1 urbe urbe 153K Apr 10 11:40 removeMateOverlap
-rwxrwxr-x 1 urbe urbe 2,5K Apr 10 11:41 replaceUIDwithName-fastq
-rwxrwxr-x 1 urbe urbe 1,2K Apr 10 11:41 replaceUIDwithName-posmap
-rwxrwxr-x 1 urbe urbe 1,3M Apr 10 11:41 resolveSurrogates
-rwxrwxr-x 1 urbe urbe 139K Apr 10 11:41 rewriteCache
-rwxrwxr-x 1 urbe urbe 232K Apr 10 11:41 runCA
-rwxrwxr-x 1 urbe urbe  88K Apr 10 11:41 runCA-dedupe
-rwxrwxr-x 1 urbe urbe  14K Apr 10 11:41 runCA-overlapStoreBuild
-rwxrwxr-x 1 urbe urbe 3,6K Apr 10 11:41 run_greedy.csh
-rwxrwxr-x 1 urbe urbe 297K Apr 10 11:40 sffToCA
-rwxrwxr-x 1 urbe urbe  13K Apr 10 11:40 show-corrects
-rwxrwxr-x 1 urbe urbe 557K Apr 10 11:41 splitUnitigs
-rwxrwxr-x 1 urbe urbe 1,4M Apr 10 11:41 terminator
drwxrwxr-x 2 urbe urbe 4,0K Apr 10 11:41 TIGR
-rwxrwxr-x 1 urbe urbe 526K Apr 10 11:41 tigStore
-rwxrwxr-x 1 urbe urbe  35K Apr 10 11:41 tracearchiveToCA
-rwxrwxr-x 1 urbe urbe  35K Apr 10 11:41 tracedb-to-frg.pl
-rwxrwxr-x 1 urbe urbe  44K Apr 10 11:41 trimFastqByQVWindow
-rwxrwxr-x 1 urbe urbe  18K Apr 10 11:40 uidclient
-rwxrwxr-x 1 urbe urbe 589K Apr 10 11:41 unitigger
-rwxrwxr-x 1 urbe urbe  42K Apr 10 11:40 upgrade-v8-to-v9
-rwxrwxr-x 1 urbe urbe  42K Apr 10 11:40 upgrade-v9-to-v10
-rwxrwxr-x 1 urbe urbe  854 Apr 10 11:41 utg2fasta
-rwxrwxr-x 1 urbe urbe 731K Apr 10 11:41 utgcns
-rwxrwxr-x 1 urbe urbe 561K Apr 10 11:41 utgcnsfix

Address of the bookmark: http://wgs-assembler.sourceforge.net/wiki/index.php/Main_Page