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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/923?offset=230</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32184/metagenomics-assembly-workshop</guid>
	<pubDate>Tue, 18 Apr 2017 04:28:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32184/metagenomics-assembly-workshop</link>
	<title><![CDATA[Metagenomics assembly workshop !!]]></title>
	<description><![CDATA[<div>
<div>
<div id="welcome-to-metagenomics-workshop">
<p>Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning.</p>
<div>
<ul>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/data.html">The Tutorial Data Set</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/qc/index.html">FastQC Quality Control</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/assembly/index.html">Assembly</a>
<ul>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/assembly/velvet.html">Velvet Assembly</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/assembly/megahit.html">MEGAHIT Assembly</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/assembly/idba_ud.html">IDBA-UD Assembly</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/assembly/ray.html">Ray Assembly</a></li>
</ul>
</li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/geneprediction/index.html">Gene Prediction</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/evaluation/index.html">Assembly Evaluation</a>
<ul>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/evaluation/mapping.html">Read Mapping</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/evaluation/metaquast.html">MetaQUAST</a></li>
</ul>
</li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/binning/index.html">Binning</a>
<ul>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/binning/maxbin.html">MaxBin Binning</a></li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/binning/metabat.html">MetaBAT Binning</a></li>
</ul>
</li>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/classification/index.html">Classification</a>
<ul>
<li><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/classification/kraken.html">Kraken Taxonomic Sequence Classification System</a></li>
</ul>
</li>
</ul>
</div>
</div>
</div>
</div>
<div><a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/data.html" title="The Tutorial Data Set">Next&nbsp;<span></span></a>
<p>&nbsp;</p>
</div><p>Address of the bookmark: <a href="http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html" rel="nofollow">http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43943/bioinformatics-tutorial</guid>
	<pubDate>Mon, 22 Aug 2022 23:56:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43943/bioinformatics-tutorial</link>
	<title><![CDATA[Bioinformatics Tutorial !]]></title>
	<description><![CDATA[<p>This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if you're not sure, then the place to start is definitely Unix <p>Address of the bookmark: <a href="https://astrobiomike.github.io/" rel="nofollow">https://astrobiomike.github.io/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31574/biostats-class-tutorial</guid>
	<pubDate>Thu, 16 Mar 2017 01:50:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31574/biostats-class-tutorial</link>
	<title><![CDATA[BioStats class tutorial]]></title>
	<description><![CDATA[<p>Nice biostat turorial by&nbsp;<strong>Ingo Ruczinski</strong></p><p>Address of the bookmark: <a href="http://www.biostat.jhsph.edu/~iruczins/teaching/" rel="nofollow">http://www.biostat.jhsph.edu/~iruczins/teaching/</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37840/long-read-assembly-workshop</guid>
	<pubDate>Thu, 04 Oct 2018 17:23:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37840/long-read-assembly-workshop</link>
	<title><![CDATA[Long read assembly workshop !]]></title>
	<description><![CDATA[<p>This is a tutorial for a workshop on long-read (PacBio) genome assembly.</p>
<p>It demonstrates how to use long PacBio sequencing reads to assemble a bacterial genome, and includes additional steps for circularising, trimming, finding plasmids, and correcting the assembly with short-read Illumina data.</p>
<p>&nbsp;Please comment if you know any other long read addembly tutorial.</p><p>Address of the bookmark: <a href="http://sepsis-omics.github.io/tutorials/modules/cmdline_assembly_v2/" rel="nofollow">http://sepsis-omics.github.io/tutorials/modules/cmdline_assembly_v2/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42552/bioinformatics-workbook</guid>
	<pubDate>Tue, 05 Jan 2021 22:42:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42552/bioinformatics-workbook</link>
	<title><![CDATA[bioinformatics workbook]]></title>
	<description><![CDATA[<p><span>This books assumes that the reader has some knowledge of biology and basic understanding of the Unix command line. However, for the beginner, the appendix contains introductory material and tips/tricks for common bioinformatic problems, that is referred to for more information throughout the book.</span></p>
<p>https://bioinformaticsworkbook.org/</p><p>Address of the bookmark: <a href="https://bioinformaticsworkbook.org/" rel="nofollow">https://bioinformaticsworkbook.org/</a></p>]]></description>
	<dc:creator>biogeek</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/861/fiona-brinkman-laboratory</guid>
  <pubDate>Sun, 14 Jul 2013 12:46:31 -0500</pubDate>
  <link></link>
  <title><![CDATA[Fiona Brinkman Laboratory]]></title>
  <description><![CDATA[
<p>Infectious disease control needs to be made more “sustainable”. We need to reduce selective pressure on pathogens to evolve antibiotic resistance. We need to control infectious disease outbreaks and associated immune disorders with a better understanding of the genetic,  environmental and social factors that impact disease spread and severity.</p>

<p>Research Area</p>

<p>Investigating the role in disease of both the microbe and its host (i.e immune system failure), using genomics and systems biology-based approaches<br />Using genomics and network analysis to characterize disease outbreaks and their environmental/social/genetic causes, and<br />Identifying new anti-infective and immune modulating therapies/biomarkers.</p>

<p>Link @ http://www.brinkman.mbb.sfu.ca/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/879/bioprogramming</guid>
	<pubDate>Sun, 14 Jul 2013 16:29:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/879/bioprogramming</link>
	<title><![CDATA[BioProgramming]]></title>
	<description><![CDATA[<p>The completion of the first human genome drafts was just a start of the modern DNA sequencing era which resulted in further invention, improved development toward new advanced strategies of high-throughput DNA sequencing, so called the &ldquo;high-throughput next generation sequencing&rdquo; (HT-NGS). The decreasing genome sequencing cost and desire to explore and understand biological machanism at genomic level, speed up the genomic sequencing projects. In the fast growing HT-NGS technologies, the main challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformatics tools. In oder to develope sotware/tools bioinformatician/ biological programmers need to expertise in any one one the programming language. However, sometime one language are not enough to handle all sort of biological needs, which compel us to learn new biologically suitable language to handle ever growing genome or protein sequences.</p><p>The next step after reading genetic code is writing a script to analyse and explore the hidden information. This tutorial is aimed to introduce you new biological programming languages with their packages/libraries, and assist in your scripting work.</p><p>Navigate the sub-section of this page [ see right hand side of the page for it ]</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1466/iscb-asia-2013-translational-bioinformatics-conference</guid>
  <pubDate>Thu, 08 Aug 2013 06:31:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[ISCB-Asia 2013 Translational Bioinformatics Conference]]></title>
  <description><![CDATA[
<p>ISCB-Asia 2013<br />Translational Bioinformatics Conference<br />Seoul, Korea<br />October 2 - 4, 2013</p>

<p>For more information visit: http://www.snubi.org/TBC2013/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1491/2013-nextgen-genomics-bioinformatics-technologies-ngbt-conference-new-delhi-india</guid>
  <pubDate>Thu, 08 Aug 2013 16:21:16 -0500</pubDate>
  <link></link>
  <title><![CDATA[2013 NextGen Genomics &amp; Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA]]></title>
  <description><![CDATA[
<p>2013 NextGen Genomics &amp; Bioinformatics Technologies (NGBT) Conference</p>

<p>SciGenom Research Foundation (SGRF) and Institute of Genomics and Integrative Biology (IGIB) are pleased to host the Next-Generation Sequencing and Bioinformatics for Genomics &amp; Healthcare conference.</p>

<p>In the ten years since the first human reference genome was completed for US$3 billion the sequencing technologies have radically changed leading to great reduction in sequencing cost. Today a human genome can be sequenced for under US$ 5000 in less than two weeks. It is expected that by the end of 2015 the cost of sequencing a human genome will drop to below thousand dollars. The next generation sequencing technologies over the past five years have enabled a large number of genomic studies that impact human health and disease. Also, this has made possible the growth of microbial, animal and plant genomics studies. While the data production has increased at a rapid pace challenges remain in analyzing and understanding the data. The conference will cover the next generation sequencing (NGS) technologies, bioinformatics for NGS and applications of NGS in many areas including personalized medicine.</p>

<p>For more info : http://www.scigenomconferences.com/2013/default.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/1970/indias-own-first-drug-from-biocon</guid>
	<pubDate>Sun, 11 Aug 2013 16:05:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/1970/indias-own-first-drug-from-biocon</link>
	<title><![CDATA[India&#039;s own first drug - from Biocon.]]></title>
	<description><![CDATA[<p><span><span>Psoriasis is immune-mediated disease that effects the skin. the Disease on an average affects about 10-20 million Indians and it attacks the immune system of human beings. In generally occurs, when the immune system mistakes a normal skin cell for a pathogen, and sends out faulty signals that cause overproduction of new skin cells. <a href="http://en.wikipedia.org/wiki/Psoriasis">More at &gt;&gt;</a><br /></span></span></p><p><span><span>Biocon, India's largest publicly-held biotechnology firm, launched its second novel 'lab-to-market' molecule,<strong> Alzumab</strong>, to treat chronic plaque <strong>psoriasis</strong> at a cost 50 per cent lower than the existing one. </span></span></p><p><span><span><span><span>Biocon is bringing Alzumab (a biologic) in the form of a vial after working on it for nearly a decade. The work had initially started in a joint effort with the Center of Molecular Immunology, Havana, but Biocon took control of the programme soon after and also bought out its partner a few years ago. Biocon tell to the media that genotypic played a critical role in functional studies and clinical trial Genomics. </span></span><br /><br />The Biocon drug, at around&nbsp;₹ 7,500 a vial, will cost half as much as the currently available drugs - from Pfizer and J&amp;J - to treat psoriasis, a skin disease that causes rough red areas where the skin comes off in small pieces. A patient is usually prescribed to consume more than 40 vials in a 24-week course.<br /><br /></span></span></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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