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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/9586?offset=1260</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/19090/deeptools</guid>
	<pubDate>Sat, 08 Nov 2014 15:02:08 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/19090/deeptools</link>
	<title><![CDATA[deepTools]]></title>
	<description><![CDATA[<p>deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. To do so, deepTools contains useful modules to process the mapped reads data to create coverage files in standard bedGraph and bigWig file formats. By doing so, deepTools allows the creation of normalized coverage files or the comparison between two files (for example, treatment and control). Finally, using such normalized and standardized files, multiple visualizations can be created to identify enrichments with functional annotations of the genome.<br /><br />Publicaton: http://nar.oxfordjournals.org/content/early/2014/05/05/nar.gku365.full<br /><br />Source Code and Wiki: https://github.com/fidelram/deepTools/wiki<br /><br />Galaxy Tool Shed repository: http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools<br /><br />and example Galaxy workflows: http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_workflows</p>]]></description>
	<dc:creator>Martin Jones</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41691/genobuntu-package-for-next-generation-sequencing-and-genome-assembly</guid>
	<pubDate>Mon, 18 May 2020 16:47:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41691/genobuntu-package-for-next-generation-sequencing-and-genome-assembly</link>
	<title><![CDATA[Genobuntu: Package for Next Generation Sequencing and Genome Assembly]]></title>
	<description><![CDATA[<div>
<p>Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.<br><br>Commonly used biological software and example script files for different assembly pipelines have also been provided, where the example script files can be updated to suit one&rsquo;s experimental needs. Genobuntu attempts to reduce the amount of time and energy needed to build software workstations and it can also act as a good teaching source for a class room setting.<br><br>Therefore, Genobuntu offers a well-tailored environment for both novices and experts working in the field of genome assembly.</p>
</div>
<div>
<h3>Features</h3>
<ul>
<li>Velvet</li>
<li>MiB</li>
<li>SSAKE</li>
<li>EULER</li>
<li>VCAKE</li>
<li>ABySS</li>
<li>ALLPATHS</li>
<li>Celera</li>
<li>SHARCGS</li>
<li>Allpaths</li>
<li>IDBA</li>
<li>TAIPAN</li>
<li>Edena</li>
<li>SOAPdenovo</li>
<li>Maq</li>
<li>IDBA-UD</li>
<li>No. of Reads present in the Ref. Seq.</li>
<li>ART NGS Reads Simulator</li>
<li>HiTEC, FASTQC</li>
<li>Minimum Description Length</li>
<li>SOAPaligner</li>
<li>Sequencing Read Archive Toolkit</li>
</ul>
</div><p>Address of the bookmark: <a href="https://sourceforge.net/projects/genobuntu/" rel="nofollow">https://sourceforge.net/projects/genobuntu/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19161/niab-molecular-biologybioinformatics-scientistra-openings</guid>
  <pubDate>Thu, 13 Nov 2014 13:37:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[NIAB Molecular Biology/Bioinformatics Scientist/RA Openings]]></title>
  <description><![CDATA[
<p>D. No. 1-121/1, 4th and 5th Floors, Axis Clinicals Building, Miyapur, Hyderabad, Telangana, India- 500 049</p>

<p>Email: admin@niab.org.in Telephones: +91 40 2304 9403 Telefax: +91 40 2304 2740<br />Advertisement No: 5/2014</p>

<p>About NIAB National Institute of Animal Biotechnology (NIAB), Hyderabad, an autonomous institute under the aegis of Department of Biotechnology, Government of India, is aimed to harness novel and emerging biotechnologies and create knowledge in the cutting edge areas for improving animal health and productivity.</p>

<p>Applications are invited for the following temporary research positions to work in ongoing DBTBBSRC sponsored research project entitled “Transcriptome Analysis in Indian buffalo and the Genetics of Innate Immunity” at the National Institute of Animal Biotechnology, Hyderabad.</p>

<p>(A) Project Scientist – Level B (One Position)</p>

<p>Emoluments: Rs. 15600 + GP Rs. 5400 + 30 % HRA p.m. (Total emoluments will be Rs. 49,770/-p.m. for the duration of the project)</p>

<p>Essential Qualification: Candidates having M.V.Sc. in Veterinary Microbiology / Veterinary Pathology / Veterinary Public Health / Ph.D. degree in Life Sciences, Biotechnology, Molecular Biology or any other related field from the recognized university are eligible to apply.</p>

<p>The candidate should have a good academic record and research experience as evidenced from published in standard referred journals / patents.</p>

<p>Desirable: Candidates having research experience in the area of tissue culture, genomics, Transcriptomics and Advanced Molecular Biology will be given preference.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>(B) Research Associate in Bioinformatics (One position)</p>

<p>Fellowship: Rs. 22,000 + 30 % HRA</p>

<p>Essential Qualification: Candidates having Ph.D. degree or M.Tech. with three years of<br />experience in Bioinformatics, Computational Biology, Biotechnology, Life Sciences or any other related field are eligible to apply.</p>

<p>Desirable: Candidate having research experience in the area of next generation sequencing (NGS) data analysis, Genome wide association studies, Genomic selection, advance genomic data analysis etc., will be given preference. The candidate should have a good academic record and research experience as evidenced from published papers in standard journals / patents.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>Project Duration: The duration of the project is Three years and the positions are co- terminus with the duration of the project. (Initial appointment will be for one year and further extension will be granted based on annual review).</p>

<p>Mode of submission of application: Only online applications are to be submitted through<br />www.niab.org.in on or before 08 December, 2014. Link for online submission of applications will be available from 10 November 2014.</p>

<p>Advertisement: www.niab.org.in/Notifications/Advt_5_2014/Advt_5_2014.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1897/genetic-test-in-india</guid>
	<pubDate>Sun, 11 Aug 2013 10:54:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1897/genetic-test-in-india</link>
	<title><![CDATA[Genetic Test in India]]></title>
	<description><![CDATA[<p>1.<strong>Xcode Life Sciences Pvt. Ltd.</strong><br /><span>6B, Eldorado,&nbsp;</span><br /><span>112, Nungambakkam High Road,</span><br /><span>Nungambakkam, Chennai 600034</span><br /><span>Tamil Nadu, India&nbsp;</span></p><p>2.<span><strong>Mapmygenome&trade;</strong><br /></span><span>Royal Demeure,HUDA Techno Enclave,<br />Plot No. 12/2, Sector-1 500 081&nbsp;<br />Madhapur,Hyderabad<br />AP, India</span></p><p>3.<strong>&nbsp;DNA Labs India</strong></p><p><strong><a href="http://www.dnalabsindia.com/lab.php">http://www.dnalabsindia.com/lab.php</a></strong></p><p>&nbsp;</p><p>4.<strong>MedGenome Labs Pvt Ltd</strong><br /><span>(Division of SciGenom Labs Pvt Ltd.)</span><br /><span>Plot no: 43A,SDF, 3rd floor</span><br /><span>A Block,CSEZ, Kakanad, Cochin</span><br /><span>Kerala - 682037&nbsp;</span><br /><span>Phone: 0484 - 2413399</span><br /><span>Fax: 0484 - 2413398</span><br /><span>Email:&nbsp;</span><a href="mailto:info@medgenome.com">info@medgenome.com</a></p><p>5.<strong>Narayana Nethralaya</strong></p><p><span>Narayana Hrudayalaya Campus</span><br /><span>Narayana Health City</span><br /><span># 258/A, Bommasandra, Hosur Road,&nbsp;</span><br /><span>Bangalore - 560 099 - INDIA.</span><br /><span>TEL: +91-80-66660655-0658&nbsp;</span><br /><span>FAX: +91-80-66660650&nbsp;</span><br /><span>Mobile: 9902 821128 (Emergency Only)</span><br /><span>e-mail:&nbsp;</span><a href="mailto:info@narayananethralaya.com">info@narayananethralaya.com</a></p><p>6.<strong>BioAxis DNA Research Centre Private Limited</strong><br />13-51,Sri Lakshmi Nagar colony,<br />Besides Big Bazar, Near Kamineni Hospitals<br />GSI Post BandalGuda (L B Nagar) Hydeabad-500068<br />Andhra Pradesh (<strong>India</strong>).<br />Phone :&nbsp;+91-40-24034503/+91-9246338983</p><p>7.<strong>Gene Guiide</strong></p><p>8th Floor, Embassy Towers, 7 Bungalows Rd, Versova, Andheri West, Mumbai-61&nbsp;<br />&nbsp;09167 117799&nbsp;<br />&nbsp;<a href="mailto:info@geneguiide.com" target="_blank">info@geneguiide.com</a>&nbsp;</p><p>See more at: http://www.geneguiide.com</p><p>8.<strong>INDIAN BIOSCIENCES</strong><br />Regd. Office:<br />G-2 (Ground Floor Rear), Kailash Colony, New Delhi - 110048, India.<br />Phone: +91 (0)11 29236088, Email: info@inbdna.com.</p><p>9.<strong>SRL Limited</strong></p><p>GP-26, MARUTI INDUSTRIAL ESTATE,</p><p>UDYOG VIHAR,SECTOR-18,</p><p>GURGAON - 122015</p><p>Tel: 0124-3001243 / 0124-3001209</p><p><strong>SRL Limited</strong><br />VASANT VIHAR, 8, PALAM MARG,<br />NEW DELHI - 110057<br />Tel: 011 - 4229 5333&nbsp;</p><p><strong>Website:</strong>&nbsp;<a href="http://www.srlworld.com/" target="_blank">http://www.srlworld.com</a><br /><strong>National Customer care number:</strong><br />Call Toll Free : 1800-222-660/1800-102-8282&nbsp;<br /><strong>E-mail id:</strong>&nbsp;<a href="mailto:customercare@srl.in">customercare@srl.in</a></p><p>10.<strong>Tata Memorial Centre</strong>,</p><p>Advanced Centre for Treatment, Research and Education in Cancer</p><p>Kharghar, Navi Mumbai - 410 210, INDIA.</p><p>Tel: +91-22-2740 5000</p><p>Fax: +91-22-2740 5085</p><p>E-mail: mail@actrec.gov.in</p><p style="text-align: center;">&nbsp;</p><p style="text-align: center;"><span style="font-size: large;"><a href="mailto:office@actrec.gov.in"></a></span></p><p>&nbsp;</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19249/bioinformatics-jrfrasrf-position-at-panjab-university</guid>
  <pubDate>Wed, 19 Nov 2014 20:19:49 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/RA/SRF position at PANJAB UNIVERSITY]]></title>
  <description><![CDATA[
<p>CENTRE FOR SYSTEMS BIOLOGY &amp; BIOINFORMATICS<br />UIEAST, PANJAB UNIVERSITY, CHANDIGARH</p>

<p>Applications are invited along with complete bio-data and attested copies of certificates of qualifications, experience etc. for the one post of Research Fellow and one post of Program Assistant under PURSE Grant of the University in Centre for Systems Biology &amp; Bioinformatics, UIEAST, Panjab University, Chandigarh which is tenable till the period of<br />the project.</p>

<p>Essential Qualification</p>

<p>For Research Fellow:-</p>

<p>M.Sc. in Systems Biology and Bioinformatics / Life Sciences with minimum 55% marks.</p>

<p>Preference will be given to NET/GATE/ICMR qualified candidates without fellowship however, candidates who have cleared the Panjab University Ph.D. entrance test in Systems Biology &amp; Bioinformatics will also be eligible.</p>

<p>For Program Assistant:-</p>

<p>The candidate must have M.Sc./M.Tech/MCA/PGDCA in Computer Science and must be able to handle LAN, Linex. Preference will be given to the candidate having experience in<br />System Administration.</p>

<p>Emoluments</p>

<p>For Research Fellow Rs. 12,500/- per month (Fixed)<br />For Program Assistant Rs. 12,500/- per month (Fixed)</p>

<p>Applications should be reach on or before 19-11-2014 in the office of the undersigned.</p>

<p>Interview will be held on 21-11-2014 in the office of the Coordinator, Centre for Systems Biology &amp; Bioinformatics, South Campus, Block-3, Sector-25, Panjab University, Chandigarh. No TA/DA will be paid.</p>

<p>Advertisement:</p>

<p>http://jobs.puchd.ac.in/includes/jobs/2014/20141110143634-Advertisement.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4288/new-born-babies-get-ready-to-know-their-whole-genome-soon</guid>
	<pubDate>Thu, 05 Sep 2013 07:24:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4288/new-born-babies-get-ready-to-know-their-whole-genome-soon</link>
	<title><![CDATA[New born babies get ready to know their whole genome soon!!!]]></title>
	<description><![CDATA[<p>USA launch a pilot projects to examine medical information of newborn baby, which are being funded by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) and the National Human Genome Research Institute (NHGRI), both parts of the National Institutes of Health.</p><p>Awards of $5 million to four grantees have been made in fiscal year 2013 under the Genomic Sequencing and Newborn Screening Disorders research program. The program will be funded at $25 million over five years, as funds are made available.</p><p>"Hundreds of US babies will be pioneers in genomic medicine through a&nbsp;US$25-million programme to sequence their genomes&nbsp;soon after they are born."</p><p><strong>Source</strong>:</p><p><a href="http://blogs.nature.com/news/2013/09/scientists-to-sequence-hundreds-of-newborns-genomes.html">http://blogs.nature.com/news/2013/09/scientists-to-sequence-hundreds-of-newborns-genomes.html</a></p><p><a href="http://www.genome.gov/27554919">http://www.genome.gov/27554919</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19541/bioinformatics-sub-dic-dic</guid>
  <pubDate>Fri, 12 Dec 2014 21:14:57 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SUB DIC (DIC)]]></title>
  <description><![CDATA[
<p>Project Title BIOINFORMATICS SUB DIC (DIC)</p>

<p>Reference Number IIT/SRIC/R/DIC/2014/314, DATED 28thNovember, 2014</p>

<p>Temporary Position(s)</p>

<p>i) Junior/ Senior Project Officer (1)<br />ii) Junior Project Assistant (2)</p>

<p>Consolidated Compensation</p>

<p>i) Rs.16,000/- to Rs.18,000/- p.m. (depending on qualification &amp; experience)<br />ii) Rs.8,000/- to Rs.10,000/- p.m. (depending on qualification &amp; experience)</p>

<p>Coordinator / PI Dr. Sudip K. Ghosh, Dept of Biotechnology.</p>

<p>Department / Centre / School Dept of Biotechnology </p>

<p>Qualifications &amp; Experience</p>

<p>(i) M. Sc in any branch of Life Sciences with experience in Molecular  Biology/Genetics/Biochemistry preferably a Post Graduate diploma in Bioinformatics or two years working experience in bioinformatics (Minimum 60% marks starting from matriculation examination).</p>

<p>(ii) B. Sc. /B.A. /B. Com/Diploma in Management or Computer Science. Knowledge in computer software will be preferred (minimum 50% marks starting from matriculation examination).</p>

<p>More Information</p>

<p>Interested eligible persons may apply on plain paper, giving full bio-data along with attested copies of testimonials to the undersigned on or before 11thDecember, 2014. </p>

<p>Sponsor DBT, NEW DELHI</p>

<p>Last Date 11 Dec 2014</p>

<p>Application Fee Demand Draft for Rs.50/- (Not for female candidates) drawn in favour of IIT Kharagpur payable at Kharagpur</p>

<p>Advertisement: www.iitkgp.ac.in/topfiles/sric_job_details.php?serial=2826</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5350/introduction-of-epigenomics</guid>
	<pubDate>Sun, 06 Oct 2013 04:59:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5350/introduction-of-epigenomics</link>
	<title><![CDATA[Introduction of Epigenomics]]></title>
	<description><![CDATA[<ul>
<li><a href="http://www.genome.gov/27532724#al-1">What is the epigenome?</a></li>
<li><a href="http://www.genome.gov/27532724#al-2">What does the epigenome do?</a></li>
<li><a href="http://www.genome.gov/27532724#al-3">What makes up the epigenome?</a></li>
<li><a href="http://www.genome.gov/27532724#al-4">Is the epigenome inherited?</a></li>
<li><a href="http://www.genome.gov/27532724#al-5">What is imprinting?</a></li>
<li><a href="http://www.genome.gov/27532724#al-6">Can the epigenome change?</a></li>
<li><a href="http://www.genome.gov/27532724#al-7">What makes the epigenome change?</a></li>
<li><a href="http://www.genome.gov/27532724#al-8">How do changes in the epigenome contribute to cancer?</a></li>
<li><a href="http://www.genome.gov/27532724#al-9">How are researchers exploring the epigenome?</a></li>
</ul><p>Address of the bookmark: <a href="http://www.genome.gov/27532724" rel="nofollow">http://www.genome.gov/27532724</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19631/rosalind-bioinformatics-problems</guid>
	<pubDate>Thu, 18 Dec 2014 10:32:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19631/rosalind-bioinformatics-problems</link>
	<title><![CDATA[Rosalind Bioinformatics problems !!!]]></title>
	<description><![CDATA[<p>Rosalind is a platform for learning bioinformatics and programming through problem solving. <a href="http://rosalind.info/problems/list-view/">Take a tour</a> to get the hang of how Rosalind works.</p>
<p>http://rosalind.info/problems/list-view/</p><p>Address of the bookmark: <a href="http://rosalind.info/problems/list-view/" rel="nofollow">http://rosalind.info/problems/list-view/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/10379/your-stressdepression-came-from-ancestor</guid>
	<pubDate>Sun, 04 May 2014 18:46:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/10379/your-stressdepression-came-from-ancestor</link>
	<title><![CDATA[Your stress/depression came from ancestor]]></title>
	<description><![CDATA[<p>"A study published in&nbsp;<em>Nature Neuroscience</em>&nbsp;finds that stress in early life alters the production of small RNAs, called microRNAs, in the sperm of mice. The mice show depressive behaviours that persist in their progeny."</p><p>Source:</p><p>http://www.nature.com/news/sperm-rna-carries-marks-of-trauma-1.15049</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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