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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/9586?offset=810</link>
	<atom:link href="https://bioinformaticsonline.com/related/9586?offset=810" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/34912/list-of-cancer-genomics-research-web-resources</guid>
	<pubDate>Wed, 27 Dec 2017 20:33:09 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34912/list-of-cancer-genomics-research-web-resources</link>
	<title><![CDATA[List of cancer genomics research web resources !]]></title>
	<description><![CDATA[<p>Major web resources for cancer genomics research</p><p>CGHub <br />https://cghub.ucsc.edu/ <br />Comprehensive data repository; huge data size</p><p>EGA <br />https://www.ebi.ac.uk/ega/ <br />Comprehensive data repository; huge data size</p><p>COSMIC <br />http://cancer.sanger.ac.uk <br />Largest somatic mutation database; genome sequencing paper curation</p><p>CPRG <br />http://www.broadinstitute.org/software/cprg <br />Interface for cancer program resources</p><p>GDAC <br />http://gdac.broadinstitute.org/ <br />Data analysis; automatic pipelines; user-friendly reports</p><p>SNP500Cancer <br />http://snp500cancer.nci.nih.gov <br />Sequence and genotype verification of SNPs</p><p>canEvolve <br />www.canevolve.org/ <br />Comprehensive analysis of tumor profile; Data from 90 studies involving more than 10,000 patients</p><p>MethyCancer <br />http://methycancer.psych.ac.cn <br />Relationship among DNA methylation, gene expression and cancer</p><p>SomamiR <br />http://compbio.uthsc.edu/SomamiR/ <br />Correlation between somatic mutation and microRNA; genome-wide displaying</p><p>cBioPortal <br />http://www.cbioportal.org/public-portal/ <br />Graphical summaries; gene alteration; processed data; visualization</p><p>UCSC Cancer Genomics Browser <br />https://genome-cancer.soe.ucsc.edu/ <br />Clinical information; gene expression; copy number variation; visualization</p><p>CGWB <br />https://cgwb.nci.nih.gov/ <br />Visualization; gene mutation and variation; automated analysis pipeline</p><p>GDSC <br />http://www.cancerrxgene.org <br />Drug sensitivity information; drug response information</p><p>canSAR <br />https://cansar.icr.ac.uk/ <br />Multidisciplinary information; drug discovery</p><p>NONCODE <br />http://www.noncode.org/ ncRNAs; <br />lncRNAs; up-to-date and comprehensive resource</p>]]></description>
	<dc:creator>biogeek</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38577/genoviz-visualization-software-for-genomics</guid>
	<pubDate>Wed, 02 Jan 2019 04:07:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38577/genoviz-visualization-software-for-genomics</link>
	<title><![CDATA[GenoViz: Visualization software for genomics]]></title>
	<description><![CDATA[<p><span>GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser (IGB).</span><br><br><span>For more information about IGB, visit&nbsp;</span><a href="http://bioviz.org/" target="_blank">http://bioviz.org<span></span></a><span>.</span><br><br><span>Source code for the project was hosted here for many years. In 2014, we moved to a new git repository at&nbsp;</span><a href="http://www.bitbucket.org/lorainelab/integrated-genome-browser" target="_blank">http://www.bitbucket.org/lorainelab/integrated-genome-browser<span></span></a><span>. We are still using SourceForge to distribute new releases of IGB as compiled code (igb.zip) you can use to run IGB on your computer.&nbsp;</span><br><br><span>If you have questions, feel free to get in touch. Contact project head Ann Loraine (</span><a href="mailto:aloraine@uncc.edu" target="_blank">aloraine@uncc.edu<span></span></a><span>) or lead developer David Norris (</span><a href="mailto:dcnorris@uncc.edu" target="_blank">dcnorris@uncc.edu<span></span></a><span>&gt;).</span></p><p>Address of the bookmark: <a href="https://sourceforge.net/projects/genoviz/" rel="nofollow">https://sourceforge.net/projects/genoviz/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/14904/bioinformatics-jrfsrf-position-at-iari</guid>
  <pubDate>Thu, 04 Sep 2014 04:14:01 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at IARI]]></title>
  <description><![CDATA[
<p>DIVISION OF NEMATOLOGY<br />INDIAN AGRICULTURAL RESEARCH INSTITUTE<br />NEW DELHI 110012<br />Applications are invited for the posts of one Junior<br />Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics - insilico resource development”. The project is for a period of three years. </p>

<p>Essential qualifications for JRF<br />: M. Sc. in Bioinformatics with experience in Proteomics, genomics and structural biology. Knowledge of programming language, pearl and database – HTML, CSS,php and Java script.<br />Essential qualifications for Research Associate:<br />MSc/MTech in Bioinformatics with three years experience or Ph.D in Bioinformatics with experience in proteomics, genomics and structural biology. Knowledge of programming language, perl and database<br />– HTML, CSS, Java script. NGS sequence assembly and analysis and algorithm designing.<br />Age limit : 35 years maximum (5 year relaxation for SC/ST and women candidates)<br />Emoluments:<br />JRF: 16,000 + 30% HRA<br />.<br />Res Assoc: Rs22,000 + 30% HRA<br />The post is purely temporary in nature and is co-terminus with the project. The appointment would be initially for one year and may be extended further upon satisfactory performance.<br />Interested candidates<br />should send the duly filled application forms (format in the following page ) so as to reach on or before 20.9.2014 along with all the relevant documents.</p>

<p>More at http://www.iari.res.in/files/JRF_RA-03092014-20140903-135319.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40476/libsdyogen-libibrary-for-comparative-genomics</guid>
	<pubDate>Wed, 25 Dec 2019 01:32:39 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40476/libsdyogen-libibrary-for-comparative-genomics</link>
	<title><![CDATA[LibsDyogen: Libibrary for comparative genomics]]></title>
	<description><![CDATA[<p>Library of usual classes and functions written in python and used in the Dyogen team for comparative genomics applications.</p>
<p>Collaborative python library used in the<span>&nbsp;</span><a href="http://www.ibens.ens.fr/?rubrique43&amp;lang=fr">DYOGEN team</a>for studying the evolution of gene order in vertebrates.</p>
<p><a href="http://www.ibens.ens.fr/?rubrique43&amp;lang=fr">http://www.ibens.ens.fr/?rubrique43&amp;lang=fr</a></p>
<p>&nbsp;</p><p>Address of the bookmark: <a href="https://github.com/DyogenIBENS/LibsDyogen" rel="nofollow">https://github.com/DyogenIBENS/LibsDyogen</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/15000/which-mathstatistics-programming-languageapplication-do-you-most-frequently-use-in-bioinformatics</guid>
	<pubDate>Thu, 04 Sep 2014 17:46:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/15000/which-mathstatistics-programming-languageapplication-do-you-most-frequently-use-in-bioinformatics</link>
	<title><![CDATA[Which math/statistics programming language/application do you most frequently use in bioinformatics?]]></title>
	<description><![CDATA[<p>I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?</p>]]></description>
	<dc:creator>John Parker</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41493/coronavirus-resources</guid>
	<pubDate>Wed, 25 Mar 2020 17:11:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41493/coronavirus-resources</link>
	<title><![CDATA[Coronavirus Resources !]]></title>
	<description><![CDATA[<p><span>2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC. It also incorporates a wide range of relevant information including scientific literatures, news, and popular articles for science dissemination, and provides visualization functionalities for genome variation analysis results based on all collected 2019-nCoV strains.</span></p>
<p><span>Annotation</span></p>
<p><span><a href="https://bigd.big.ac.cn/ncov/variation/annotation">https://bigd.big.ac.cn/ncov/variation/annotation</a></span></p>
<p><span>Genome wharehouse&nbsp;</span></p>
<p><span><a href="https://bigd.big.ac.cn/gwh/browse/index">https://bigd.big.ac.cn/gwh/browse/index</a></span></p>
<p>Released Genome</p>
<p><a href="https://bigd.big.ac.cn/ncov/release_genome">https://bigd.big.ac.cn/ncov/release_genome</a></p>
<p>Download data&nbsp;</p>
<p><a href="ftp://download.big.ac.cn/Genome/Viruses/Coronaviridae/">ftp://download.big.ac.cn/Genome/Viruses/Coronaviridae/</a></p>
<p>Raw data</p>
<p><a href="https://bigd.big.ac.cn/gsa/browse/run/?tag=Coronaviridae">https://bigd.big.ac.cn/gsa/browse/run/?tag=Coronaviridae</a></p><p>Address of the bookmark: <a href="https://bigd.big.ac.cn/ncov/about" rel="nofollow">https://bigd.big.ac.cn/ncov/about</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17186/urdip-pune-bioinformatics-srfpa-openings</guid>
  <pubDate>Sat, 20 Sep 2014 20:48:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[URDIP Pune Bioinformatics SRF/PA Openings]]></title>
  <description><![CDATA[
<p>CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS<br />NCL Campus, S.No.113,114, Pashan, Pune 411 008</p>

<p>ADVERTISEMENT NO. - URDIP/ 5/2014</p>

<p>Learning opportunity for young Science and Engineering professionals to make a career in Information Science Industry CSIR has set up a Unit for Research and Development of Information Products (CSIR-URDIP) at Pune to work in the area of Scientific Informatics (ChemBioinformatics/Patent Informatics/Phytoinformatics/Toxinformatics) and related<br />software development projects.</p>

<p>Applications are invited from CSIR - UGC NET Qualified Candidates for consideration as Project Fellow (PF) and/or Senior Project Fellow (SPF) based on the experience to work on existing and new projects at CSIRURDIP.</p>

<p>Project Fellow</p>

<p>    Remuneration - (Rs. 16,000.00 + 20% HRA)</p>

<p>    M. Sc. In Biochemistry/Microbiology/Bioinformatics [Post-code A02] only with minimum of 55% marks</p>

<p>Senior Project Fellow</p>

<p>    Remuneration - (Rs. 18,000.00 + 20% HRA)</p>

<p>    M. Sc. in Biochemistry/Microbiology/Bioinformatics [Post-code A05] only with minimum of 55% marks plus two years research or relevant informatics experience</p>

<p>Please visit www.urdip.res.in/career.htm to apply online by 30th September, 2014.</p>

<p>Successful candidates who have appeared for NET exam in 2012 and 2013 are only eligible to apply.</p>

<p>Advertisement: http://115.112.95.114/urhr/download/Advt5_2014.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43046/postdoctoral-fellow-for-a-large-scale-microbial-comparative-genomics</guid>
  <pubDate>Thu, 29 Apr 2021 08:44:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[postdoctoral fellow for a large-scale microbial comparative genomics !]]></title>
  <description><![CDATA[
<p>Asaf Levy hiring a postdoctoral fellow for a large-scale microbial comparative genomics project at the Hebrew University of Jerusalem (Israel). <br />The project is a continuation of Levy Asaf et al. Nature Genetics 2018 paper.<br />Requirements: <br />1.Experience with programming in at least one programming language, preferably Python.<br />2.A PhD in bioinformatics/computational biology<br />3.At least one first authorship publication in a good journal, preferably more.<br />4.Good communication skills in English <br />5.Ability to enter and study in Israel (not applicable for Pakistani people, for example). <br />6.Ability to work in a team.<br />Please send CV to alevy@mail.huji.ac.il</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17189/bioinformatics-svims-project-assistant-walk-in</guid>
  <pubDate>Sat, 20 Sep 2014 21:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SVIMS Project Assistant Walk IN]]></title>
  <description><![CDATA[
<p>SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES<br />TIRUPATI, ANDHRA PRADESH, INDIA- 517 507<br />BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS</p>

<p>Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS Bioinformatics centre under the BTISnet Project entitled “Creation of Bioinformatics Infrastructure Facility for promotion of Biology teaching through Bioinformatics” on 25.09.2014 at 11 AM in SVIMS, Tirupati. The engagement will be made purely on temporary basis for a period of one year and it can be terminated at any time without notice or without assigning any reason thereof by the Coordinator of the Project. The person engaged shall not be entitled for any claim implicit or explicit for absorption in the University.</p>

<p>1. Name of the post : Project Assistant</p>

<p>2. Qualification :<br />i) Essential : MSc Bioinformatics/MTech (Biotechnology/Bioinformatics)</p>

<p>ii) Desirable : Experience in Bioinformatics research work (Preference will be given to candidates  qualified in BINC/UGC/CSIR/NET/GATE)</p>

<p>3. Remuneration : 16000 + 10% HRA for NET/GATE candidates 14000 + 10% HRA for M. Tech / M.Sc. Candidates</p>

<p>4. Place of posting : Tirupati</p>

<p>5. Duration of the Project : One year</p>

<p>Terms and conditions:</p>

<p>1. Candidates are required to submit the Biodata relevant certificates in support of their age and educational qualification etc., before the interview committee, SVIMS University, Tirupati.</p>

<p>2. Candidates called for interview will attend the interview at their own cost.<br />3. Interim enquiries will not be entertained.<br />4. The maximum age limit for Project Assistant is 28 years for general category and 33 years for SC and ST category candidates as on 25th September, 2014.</p>

<p>Advertisement:</p>

<p>http://svr98.ehostpros.com/~svimsb98/Project%20Assistant_notification.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43928/bioinformaticians-in-comparative-and-evolutionary-genomics</guid>
  <pubDate>Tue, 02 Aug 2022 01:22:48 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformaticians in comparative and evolutionary genomics]]></title>
  <description><![CDATA[
<p>NBIS is now looking for a new member to support Swedish research in evolutionary, comparative, and population genomics, with a particular focus on conifer genomics.</p>

<p>Your tasks will consist of:</p>

<p>Advanced bioinformatics analyses within research projects across Sweden, including key involvement in a major research effort in conifer genomics.<br />Development of bioinformatics tools and workflows.<br />Educating other scientists in bioinformatics through collaboration within supported projects, teaching at national courses, and through participating in various networks.<br />Taking part in the continuous development of NBIS/SciLifeLab at a national level</p>

<p>More at https://www.uu.se/en/about-uu/join-us/details/?positionId=518909</p>
]]></description>
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