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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/9627?</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/5388/biggest-human-brain-project-hbp-launched</guid>
	<pubDate>Mon, 07 Oct 2013 19:50:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/5388/biggest-human-brain-project-hbp-launched</link>
	<title><![CDATA[Biggest Human Brain Project (HBP) launched!!!]]></title>
	<description><![CDATA[<p><img src="http://s1.ibtimes.com/sites/www.ibtimes.com/files/styles/v2_article_large/public/2013/10/07/human-brain-project.jpg" width="500" height="500" alt="image" style="border: 0px;"></p><p>"In neuroscience, the project will use neuroinformatics and brain simulation to collect and integrate experimental data, identifying and filling gaps in our knowledge, and prioritising future experiments.</p><p>In medicine, the HBP will use medical informatics to identify biological signatures of brain disease, allowing diagnosis at an early stage, before the disease has done irreversible damage, and enabling personalized treatment, adapted to the needs of individual patients. Better diagnosis, combined with disease and drug simulation, will accelerate the discovery of new treatments, drastically lowering the cost of drug discovery.<br /><br />In computing, new techniques of interactive supercomputing, driven by the needs of brain simulation, will impact a vast range of industries. Devices and systems, modelled after the brain, will overcome fundamental limits on the energy-efficiency, reliability and programmability of current technologies, clearing the road for systems with brain-like intelligence."</p><p>Source:&nbsp;<a href="http://www.forbes.com/sites/jenniferhicks/2013/10/07/the-human-brain-project-begins/">http://www.forbes.com/sites/jenniferhicks/2013/10/07/the-human-brain-project-begins/</a>&nbsp;</p><p>(<a href="https://www.facebook.com/humanbrainproj/info">https://www.facebook.com/humanbrainproj/info</a>)</p><p>Home Page:</p><p><a href="https://www.humanbrainproject.eu/">https://www.humanbrainproject.eu/</a></p><p>Jobs:</p><p><a href="https://www.humanbrainproject.eu/participate/jobs">https://www.humanbrainproject.eu/participate/jobs</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18187/bioinformatician-for-a-lab-at-the-weizmann-institute-of-science-israel</guid>
  <pubDate>Mon, 13 Oct 2014 04:38:28 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatician for a lab at the Weizmann Institute of Science, Israel]]></title>
  <description><![CDATA[
<p>We are looking for enthusiastic, motivated and talented people, at all career stages (MSc, PhD, postdoctoral fellows), to join the lab! Bioinformatics in particular are invited to apply. <br />Our lab focuses on understanding molecular mechanisms of protein modifications in cancer and immune regulation. <br />We employ advanced high-throughput proteomic and genomic methods, cell biology, biochemistry, immunology, in-vivo models as well as systems biology and bioinformatics to study the biology of PTMs in health and disease. Read more here: http://yifatmerbl.com.</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4297/how-genes-are-regulated-transcription-factors</guid>
	<pubDate>Thu, 05 Sep 2013 16:54:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4297/how-genes-are-regulated-transcription-factors</link>
	<title><![CDATA[How Genes are Regulated: Transcription Factors]]></title>
	<description><![CDATA[<iframe src="http://player.vimeo.com/video/30034882?byline=0" width="" height="" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe>Each cell in our body inherits the same master copy of DNA, but different cell types use it differently. Transcription Factors help influence which genes are used in which cell. Understanding how these dynamic proteins physically interact with DNA allows us to better understand and model their binding to DNA and their regulation of gene expression.  Scientific Direction by the Wasserman Lab at the University of British Columbia: http://www.cmmt.ubc.ca/research/investigators/wasserman/lab  Animation and editing by Blair Lyons of Stroma Studios: http://www.stromastudios.com]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42362/magic-a-tool-for-predicting-transcription-factors-and-cofactors-driving-gene-sets-using-encode-data</guid>
	<pubDate>Thu, 26 Nov 2020 11:05:04 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42362/magic-a-tool-for-predicting-transcription-factors-and-cofactors-driving-gene-sets-using-encode-data</link>
	<title><![CDATA[MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data]]></title>
	<description><![CDATA[<p><span>The algorithm presented herein,&nbsp;</span><strong>M</strong><span>ining&nbsp;</span><strong>A</strong><span>lgorithm for&nbsp;</span><strong>G</strong><span>enet</span><strong>I</strong><span>c&nbsp;</span><strong>C</strong><span>ontrollers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without an&nbsp;</span><em>a priori</em><span>&nbsp;binary classification of genes as targets or non-targets. When compared to other TF mining resources, MAGIC displayed favourable performance in predicting TFs and cofactors that drive gene changes in 4 settings: </span></p>
<p><span>1) A cell line expressing or lacking single TF, </span></p>
<p><span>2) Breast tumors divided along PAM50 designations </span></p>
<p><span>3) Whole brain samples from WT mice or mice lacking a single TF in a particular neuronal subtype </span></p>
<p><span>4) Single cell RNAseq analysis of neurons divided by Immediate Early Gene expression levels. </span></p>
<p><span>In summary, MAGIC is a standalone application that produces meaningful predictions of TFs and cofactors in transcriptomic experiments.</span></p>
<p><span>More at&nbsp;https://uwmadison.app.box.com/s/8j90e5h2rjrsz3bacaxnq8kor2o64vyg</span></p><p>Address of the bookmark: <a href="https://github.com/asroopra/MAGIC" rel="nofollow">https://github.com/asroopra/MAGIC</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/40115/naegleria-fowleri-brain-eating-amoebae</guid>
	<pubDate>Thu, 10 Oct 2019 22:12:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/40115/naegleria-fowleri-brain-eating-amoebae</link>
	<title><![CDATA[Naegleria fowleri: brain eating amoebae]]></title>
	<description><![CDATA[<div><em>Naegleria fowleri</em>&nbsp;is a free living, universally distributed amoeba, which is mostly found in natural, stagnant, warm water bodies such as ponds, lakes, etc. It is also reported to be present even in indoor water bodies, such as swimming pools within a temperature range of 40&ndash;45&deg;C.&nbsp;</div><div>&nbsp;</div><div><img src="https://d.newsweek.com/en/full/351971/naegleria-fowleri.jpg" alt="image" width="720" height="634" style="border: 0px; border: 0px;">&nbsp;</div><div><em style="font-size: 12.8px;">N. fowleri</em>&nbsp;infects the central nervous system of human body by entering through the nose during swimming and outdoor baths in natural stagnant water bodies, leading to meningoencephalitis. It is a condition of inflammation of cerebral tissues and membranes of the brain and is mostly fatal in nature. Casualties due to N. fowleri infections are reported all across the globe including a few in India but only seven survivors in the entire world have been reported till 2015.</div><div>&nbsp;</div><div>You can find two genome assembly at&nbsp;</div><div><a href="https://www.ncbi.nlm.nih.gov/assembly/?term=naegleria%20fowleri">https://www.ncbi.nlm.nih.gov/assembly/?term=naegleria%20fowleri</a></div><div>&nbsp;</div><div>More at&nbsp;<a href="https://www.ncbi.nlm.nih.gov/search/all/?term=naegleria+fowleri">https://www.ncbi.nlm.nih.gov/search/all/?term=naegleria+fowleri</a></div>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/39825/naturwissenschaftlicher-doktorand-mwd-phd-student</guid>
  <pubDate>Wed, 07 Aug 2019 03:15:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[Naturwissenschaftlicher Doktorand (m/w/d) phd student]]></title>
  <description><![CDATA[
<p>Requirement:<br />    M.Sc. in biology, bioinformatics<br />    Arthritis animal model<br />    Isolation of primary murine cells<br />    Flow Cytometry/FACS<br />    Histolgy(IHC, IF)<br />    Microscopy(Confocal microscope, Lightsheet microscope)<br />    Single Cell RNA Sequencing<br />    Real-time PCR/Arrays</p>

<p>Deadline:<br />16.08.2019</p>

<p>Link:<br />https://uk-erlangen.concludis.de/prj/shw/9a3bd37a71b632e7726f149bbd771052_0/26525/Naturwissenschaftlicher_Doktorand_m_w_d.htm?b=0</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/20585/dna-transcription-advanced</guid>
	<pubDate>Thu, 29 Jan 2015 05:31:42 -0600</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/20585/dna-transcription-advanced</link>
	<title><![CDATA[DNA Transcription (Advanced)]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/SMtWvDbfHLo" frameborder="0" allowfullscreen></iframe><p>Transcription is the process by which the information in DNA is copied into messenger RNA (mRNA) for protein production. Originally created for DNA Interactive ( http://www.dnai.org ). TRANSCRIPT: The Central Dogma of Molecular Biology: "DNA makes RNA makes protein" Here the process begins. Transcription factors assemble at a specific promoter region along the DNA. The length of DNA following the promoter is a gene and it contains the recipe for a protein. A mediator protein complex arrives carrying the enzyme RNA polymerase. It manoeuvres the RNA polymerase into place... inserting it with the help of other factors between the strands of the DNA double helix. The assembled collection of all these factors is referred to as the transcription initiation complex... and now it is ready to be activated. The initiation complex requires contact with activator proteins, which bind to specific sequences of DNA known as enhancer regions. These regions may be thousands of base pairs distant from the start of the gene. Contact between the activator proteins and the initiation-complex releases the copying mechanism. The RNA polymerase unzips a small portion of the DNA helix exposing the bases on each strand. Only one of the strands is copied. It acts as a template for the synthesis of an RNA molecule which is assembled one sub-unit at a time by matching the DNA letter code on the template strand. The sub-units can be seen here entering the enzyme through its intake hole and they are joined together to form the long messenger RNA chain snaking out of the top.</p>]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43685/chipbase-open-database-for-studying-the-transcription-factor-binding-sites-and-motifs</guid>
	<pubDate>Wed, 29 Dec 2021 05:36:03 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43685/chipbase-open-database-for-studying-the-transcription-factor-binding-sites-and-motifs</link>
	<title><![CDATA[ChIPBase: open database for studying the transcription factor binding sites and motifs]]></title>
	<description><![CDATA[<p>ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species.</p><p>Address of the bookmark: <a href="https://rna.sysu.edu.cn/chipbase/" rel="nofollow">https://rna.sysu.edu.cn/chipbase/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10773/bioinformatics-jrfsrf-position-at-national-research-centre-on-plant-biotechnology</guid>
  <pubDate>Sun, 11 May 2014 22:29:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY]]></title>
  <description><![CDATA[
<p>NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY<br />LBS, CENTRE, PUSA CAMPUS, IARI NEW DELHI<br />NEW DELHI – 110 012</p>

<p>WALK- IN –INTERVIEWS</p>

<p>Eligible candidates may appear in Walk-in-Interview on May 23, 2014 at 10 AM for the posts of Research Associates &amp; Senior Research Fellows (SRF) in the following DST/DBT/ICAR funded projects.</p>

<p>1 NPTC Project on Bioinformatics and Comparative Genomics</p>

<p>Research Associate (One)</p>

<p>Rs. 24000/- + 30% HRA for masters degree holder with more than 4 years experience</p>

<p>Essential: Ph D in Plant Molecular Biology &amp; Biotechnology/Genetics 0r Candidates who have already submitted their Ph D thesis in above subjects</p>

<p>Desirable: Research experience in Genomics, Molecular biology, Microarrays analysis, Gene cloning, transgenic Techniques , and computational analysis.</p>

<p>Senior Research Fellow ( UGCCSIR/ DBT/ ICAR Net qualified only): (One)</p>

<p>Rs. 16000/- + 30% HRA and Rs. 18000+30 HRA from 3rd year onwards</p>

<p>Essential:</p>

<p>1. ICAR/ UGCCSIR/DBT Net qualified only</p>

<p>2. M. Sc. (with thesis) in Biotechnology, Life Sciences, Biosciences/ Bioinformatics, Genetics/ Plant Pathology with experience in molecular biology.</p>

<p>Or M.Sc with more than 3 years research experiences</p>

<p>3. B.Sc. Agriculture or Biology</p>

<p>Desirable:<br />1. M. Sc. with thesis<br />2. Experience in molecular biology, plant tissue culture<br />3. Bioinformatics knowledge is important</p>

<p>2 DST JC Bose National Fellowship</p>

<p>Research Associate (Bioinformatics) : One</p>

<p>Rs.22000/- + 30% HRA for 1 &amp; 2nd Yr., Rs. 23000+ 30% HRA for 3rd year and Rs. 24000+30% HRA for 4th &amp;5th yr</p>

<p>Essential: M Ph D in Plant Molecular Biology &amp; Biotechnology/Genetics</p>

<p>Desirable: Research experience in Genomics, Molecular biology, Microarrays analysis, Gene cloning, transgenic Techniques , and computational analysis.</p>

<p>Age limit: Max.35 years (Age relaxation of 5 years for SC/ST &amp; women and 3 years for OBC)</p>

<p>The posts are purely temporary in nature and are co-terminus with the project. Initially the offer will be made for one year only and may be further extendable based on performance of the candidate. The interview will be held on May 23 , 2014 at 10:00 AM at NRCPB, LBS Building, Pusa Campus, IARI, New Delhi- 110012. The candidates must bring four copies of biodata (in the prescribed proforma), original certificates, attested photocopies of each of the certificates and an attested copy of recent passport size photograph. No. TA/DA would be given for the appearance in interview. Only the candidates having essential qualification would be entertained for the interviews. Short-listing of candidates based on academic merit and experience will be done in case of large number of applicants.</p>

<p>Advertisement: http://www.nrcpb.org/sites/default/files/Advertisement%20for%20RA%20and%20SRF%20Position.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/10379/your-stressdepression-came-from-ancestor</guid>
	<pubDate>Sun, 04 May 2014 18:46:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/10379/your-stressdepression-came-from-ancestor</link>
	<title><![CDATA[Your stress/depression came from ancestor]]></title>
	<description><![CDATA[<p>"A study published in&nbsp;<em>Nature Neuroscience</em>&nbsp;finds that stress in early life alters the production of small RNAs, called microRNAs, in the sperm of mice. The mice show depressive behaviours that persist in their progeny."</p><p>Source:</p><p>http://www.nature.com/news/sperm-rna-carries-marks-of-trauma-1.15049</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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