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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/9639?offset=310</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/8466/srf-position-in-computational-systems-biology-computational-biology-group-iiit-delhi</guid>
  <pubDate>Sun, 23 Feb 2014 20:56:08 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi]]></title>
  <description><![CDATA[
<p>An opportunity to perform research in DST supported project that involves building of mathematical models to understand the functional relationship between circadian rhythms and memory formation under stressful condition.  In this project, mathematical model of circadian rhythms based on gene regulatory mechanisms will be unified with the mathematical model of calcium signal transduction pathway to understand and predict the formation of fear memory under stressful conditions. The research scholar will spend full time on this project to build new models and expected to contribute significantly to prepare the results for publication and presentation, and to contribute to grant proposals. </p>

<p>Required Qualifications: Masters in physics/chemistry/mathematics (or) MTech in bioengineering, chemical (or) Masters in any traditional field of science with outstanding performance throughout the program. Candidate should have cleared GATE/UGC-CSIR examinations. Applicant should have done basic mathematics courses like calculus, differential equations, numerical analysis etc in their degree program and have obtained good grades in those courses. Knowledge of MATLAB and C or at least one traditional programming language is absolutely necessary. Strong inclination to understand biological concepts is a must for this research work as this project is about modeling biological systems.     </p>

<p>Salary: A fixed salary of Rs 18000 PM including HRA will be paid. </p>

<p>Last date for application: This advertisement is open until suitable candidate is found for the project. </p>

<p>Preferred Qualifications:  - Expertise in dynamical systems theory, bifurcation theory, numerical simulations, parameter estimation. </p>

<p>Independence and high motivation for carrying out interdisciplinary research. - Excellent communication skills and ability to work independently. - Good working habits. </p>

<p>Interested candidates should submit both curriculum vitae and statement of interest in PDF format to sriramk@iiitd.ac.in and should clearly mention in the subject "Application for SRF".</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/12868/landry-lab</guid>
  <pubDate>Thu, 17 Jul 2014 14:33:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Landry Lab]]></title>
  <description><![CDATA[
<p>EVOLUTIONARY AND INTEGRATIVE CELL BIOLOGY</p>

<p>Our research is at the crossroad between cell biology, ecological genomics, systems biology, molecular evolution and population genetics. We study the architecture and evolution of protein and signalling networks.</p>

<p>More at http://landrylab.ibis.ulaval.ca/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/8970/j-aires-de-sousa-research-group</guid>
  <pubDate>Wed, 12 Mar 2014 09:57:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[J. Aires de Sousa Research Group]]></title>
  <description><![CDATA[
<p>We are involved in the development of methods and software in chemoinformatics. Current main projects are:</p>

<p>1.automatic learning of chemical reactivity and metabolism,<br />2.simulation of NMR spectra,<br />3.modelling of properties of ionic liquids, and<br />4.representation of molecular chirality.</p>

<p>More at http://joao.airesdesousa.com/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/9341/gerstein-lab</guid>
  <pubDate>Wed, 19 Mar 2014 12:48:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[Gerstein Lab]]></title>
  <description><![CDATA[
<p>The focus of the Gerstein Lab is interpreting personal genomes, particularly in relation to disorders, such as cancer. This endeavor has a number of related aspects described below. Moreover, the approaches we take have broad connections to a variety of data-intensive fields, within the emerging discipline of data science. </p>

<p>Personal Genome Variation: SVs<br />Human Genome Annotation: Processing Next-Gen Sequencing Data<br />Comparative Genomics: Pseudogenes as Molecular Fossils<br />Protein Structure and Function: Macromolecular Motions<br />Analysis of Diverse Networks<br />Genomics at the Forefront of Data Science</p>

<p>Lab page: http://www.gersteinlab.org/</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/9519/bioinformatics-phd-at-university-of-calcutta</guid>
  <pubDate>Mon, 31 Mar 2014 08:41:04 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics PhD at University of Calcutta]]></title>
  <description><![CDATA[
<p>University of Calcutta<br />Department of Biophysics, Molecular Biology &amp; Bioinformatics</p>

<p>Applications are invited for admission to the Ph.D. programme in the Department of Biophysics, Molecular Biology &amp; Bioinformatics, University of Calcutta for the year 2014 from eligible candidates who would be placed under the departmental teachers or affiliated research supervisors for the pursuance of their Ph.D. programme.</p>

<p>Candidates are requested to download the Ph.D. admission test application form from the University website and apply in the prescribed proforma by paying Rs. 100/- through a challan available through different University Cash counters. The challan is to be duly forwarded through the Head, Department of Biophysics, Molecular Biology &amp; Bioinformatics, University of Calcutta.</p>

<p>The completed application form with a copy of the paid challan is to be submitted to the office of the Department by April 16, 2014.</p>

<p>Syllabus for the Test: The questions for the admission test and interview will be based on topics in the following areas:</p>

<p>Mathematical methods, Molecular and Cellular Biophysics, Molecular and Cell Biology, Biochemistry, Genetics, Plant Biology, Developmental biology, Neurobiology, Biotechnology and Bioinformatics.</p>

<p>However, the interview will be primarily based on the research emphasis of the candidate. Candidates must clearly indicate the program in which they want to apply.</p>

<p>Date of Admission test : April 22, 2014 (Tuesday)</p>

<p>Date of publication of selection list for the interview : April 22, 2014(Tuesday)</p>

<p>Date of Interview : April 23, 2014 (Wednesday)</p>

<p>Number of vacancies for the Ph.D. programme : 12</p>

<p>Reservation policy will be followed as per rules.</p>

<p>Candidates with valid NET/GATE/M.Phil. or equivalent qualifications are not required to appear at the admission test but would need to qualify in the interview.</p>

<p>Advertisement:</p>

<p>http://www.caluniv.ac.in/admission%20notice/PHD_BIO_PHYSICS.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/9701/postodoc-in-computationalsystems-biology-and-machine-learning</guid>
  <pubDate>Wed, 09 Apr 2014 20:47:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postodoc in Computational/Systems Biology and Machine Learning]]></title>
  <description><![CDATA[
<p>One profile of Computational/Systems Biology and Machine Learning at Postdoc level is needed at the Laboratory of Immunobiology of Neurological Disorders led by Cinthia Farina, Institute of Experimental Neurology, Ospedale San Raffaele, Milano. The projects of interest for this application involve research on translational bioinformatics in complex human disorders.<br /> <br />You have a  PhD in Computational Science, Bioinformatics,  or equivalent.<br /> <br />Especially relevant skills for the profile are:<br />1. In-depth understanding and implementation of methods and development of<br />algorithms for statistical and machine learning classification, clustering, predictive<br />modelling.<br />2. Experience on transcriptomics and clinical data analysis, in particular gene regulatory networks, protein interactomes, development of diagnostic tools.<br /> <br />3. Solid experience with data mining, bioinformatics programming and statistics for bioinformatics.<br />4. Flexibility and willing to work across multiple projects and technology in a rapidly evolving scientific context. <br /> <br />Candidates with programming/scripting experience are also welcome. In particular, proficiency in one or more mainstream programming languages (C, C++, Java, Python, Perl, etc.), together with the understanding of relational database design and SQL/DBMS systems (e.g. MySQL, PHP, Oracle).<br />Experience with the analysis of next-generation sequencing data is a plus.<br />Clear demonstration of experience in analysis and modelling of omics and clinical data must be provided.<br /> <br />Interested candidates should send to farina.cinthia@hsr.it:<br /> <br />1. CV (please show evidences of relevant titles, projects, courses, references, etc.)<br />2. One page with a list of research topics (i.e. ongoing projects)<br />3. earliest availability<br />4. 2-3 contact names</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10392/research-associate-ra-at-institute-of-advanced-study-in-science-and-technology</guid>
  <pubDate>Mon, 05 May 2014 08:44:24 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate (RA) at INSTITUTE OF ADVANCED STUDY IN SCIENCE AND TECHNOLOGY]]></title>
  <description><![CDATA[
<p>INSTITUTE OF ADVANCED STUDY IN SCIENCE AND TECHNOLOGY<br />(An Autonomous Institute under Department of Science and Technology, Govt. of India)<br />Paschim Boragaon, Garchuk, Guwahati-781035</p>

<p>Appointment Adv.No.2</p>

<p>Applications in plain paper are invited from Indian citizens for one/two position each of Research Associate, Traineeship and Studentship for BIF facility, Division of Life Sciences, IASST.</p>

<p>Applications with complete Bio-data containing contact address, e-mail and phone number, two recent passport size photographs and attested copies of mark sheets, certificates etc., should be sent to the Registrar, IASST, Paschim Boragaon, Garchuk, Guwahati – 781035, Assam, so as to reach on or before 5/05/2014.</p>

<p>A. Research Associate:</p>

<p>Number of vacancies: 1 (One)</p>

<p>Qualifications:</p>

<p>PhD in Bioinformatics or allied disciplines with knowledge of Bioinformatics. The candidates who have submitted PhD thesis may also apply.</p>

<p>In case, candidates having PhD are not found, candidates having MSc in Bioinformatics or allied disciplines with sound knowledge of Bioinformatics will be preferred.</p>

<p>Remuneration: Candidate having PhD will get a consolidated remuneration of Rs. 22,000/- +HRA per month. MSc having NET/GATE/SLET qualified candidate will get a remuneration of Rs. 16,000/= and HRA and candidate with only MSc will get a remuneration of Rs.14,000/- and HRA.</p>

<p>Tenure:</p>

<p>The post is initially for one year and may be extended depending on the performance till the tenure of the project.</p>

<p>B. Traineeship:</p>

<p>Number of vacancies: 2 (Two)</p>

<p>Qualifications:</p>

<p>Candidate with a postgraduate degree in Bioinformatics/Biotechnology/Life sciences from a recognised University</p>

<p>Remuneration: Rs. 5000/month for 6 months</p>

<p>C. Studentship:</p>

<p>Number of vacancies: 2 (Two)</p>

<p>Qualifications:</p>

<p>Candidate pursuing M.Sc in bioinformatics in a recognised University.</p>

<p>Remuneration: Rs. 5000/month for 6 months</p>

<p>Advertisement:</p>

<p>http://iasst.gov.in/pdf/recruitment/advt%20no_2_24042014.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/10260/%E2%80%9Con%E2%80%9D-and-%E2%80%9Coff%E2%80%9D-the-neuron</guid>
	<pubDate>Fri, 25 Apr 2014 19:31:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/10260/%E2%80%9Con%E2%80%9D-and-%E2%80%9Coff%E2%80%9D-the-neuron</link>
	<title><![CDATA[“On” and “Off” the neuron !!!]]></title>
	<description><![CDATA[<p><span>Optogenetics is a recent innovation in neuroscience that gives researchers the ability to control the activity of neurons with light. With this powerful tool, researchers are teasing apart the biological basis of memory, behavior, and disease (see &ldquo;<a href="http://www.technologyreview.com/news/517226/scientists-make-mice-remember-things-that-didnt-happen/"><span>Scientists Make Mice &lsquo;Remember&rsquo; Things That Didn&rsquo;t Happen</span></a>&rdquo; and &ldquo;<a href="http://www.technologyreview.com/news/423254/an-on-off-switch-for-anxiety/"><span>An On-Off Switch for Anxiety</span></a>,&rdquo;). But for the first several years of this technology&rsquo;s existence, the proteins that scientists added to neurons to make them react to light were only good at activating neurons. That limited researchers&rsquo; ability to understand neuronal circuits, sets of interconnected neurons that are thought to control behavior and, when misfiring, to underlie many brain conditions. Problems can arise from any imbalance in circuit activity, whether too much or too little.&nbsp;</span></p><p><span>Now, two research groups have engineered new optogenetic proteins that can be used to efficiently silence neurons.&nbsp;<span><span>One of the two new proteins comes from the lab of<span>&nbsp;</span><a href="http://www.stanford.edu/group/dlab/about_pi.html" target="_blank">Karl Deisseroth</a>, a psychiatrist and neuroscientist at Stanford University who helped develop optogenetics as a research tool.&nbsp;His group&rsquo;s new &ldquo;off&rdquo; switch for neurons was created by changing 10 of the 333 amino acids in an existing optogenetic protein, which itself had been engineered by combining natural proteins from<span>&nbsp;</span></span></span><a href="http://genome.jgi-psf.org/Chlre3/Chlre3.home.html" target="_blank"><span>green algae</span></a><span><span>. That advance&nbsp;</span><span>&ldquo;creates a powerful tool that allows neuroscientists to apply a brake in any specific circuit with millisecond precision,&rdquo; said Thomas&nbsp;Insel, director of the National Institute of Mental Health, in a released statement.&nbsp;</span><a href="http://www.sciencemag.org/content/344/6182/409" target="_blank"><span>The other new silencing protein</span></a>, developed by scientists at the H</span><span>umboldt University of Berlin and collaborators, was created by changing amino acids in the same existing optogenetic protein.&nbsp;</span></span></p><p><span><span>Some researchers are also looking to optogenetics as a potential treatment for patients with a variety of conditions (see &ldquo;</span></span><span><a href="http://www.technologyreview.com/news/524771/for-mice-and-maybe-men-pain-is-gone-in-a-flash/"><span>For Mice, and Maybe Men, Pain Is Gone in a Flash</span></a><span><span>,&rdquo; and &ldquo;</span></span><a href="http://www.technologyreview.com/news/506981/flipping-on-the-lights-to-halt-seizures/"><span>Flipping on the Lights to Halt Seizures</span></a><span><span>&rdquo;) but there are huge challenges to overcome. The method requires genetic modification of cells to make them light-sensitive. It also requires implanted light sources for all but the shallowest of nerve endings. <br /></span></span></span></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10460/assistant-professor-at-jawaharlal-nehru-university-in-delhi</guid>
  <pubDate>Wed, 07 May 2014 00:29:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor at Jawaharlal Nehru University in Delhi]]></title>
  <description><![CDATA[
<p>Advt. No. RC/48/2014</p>

<p>SCHOOL OF COMPUTATIONAL AND INTEGRATIVE SCIENCES (SC&amp;IS)</p>

<p>ESSENTIAL QUALIFICATION : - M.Sc./M.Tech. in Physics/ Chemistry/ Biology/ Mathematics/ Statistics/ Bioinformatics/ Computational Biology. Ph.D. in the broad areas of Bioinformatics/ Computational Biology. Candidates must have demonstrated capabilities in terms of high impact research publications in either of the above mentioned areas.</p>

<p>Scale of Pay : - 15600-39100/- (PB-III) AGP Rs. 6000/-</p>

<p>For more details on Centre/School, Specializations etc. please visit JNU website www.jnu.ac.in or contact Section Officer, Room Nos. 131-132, Recruitment Cell, Administrative Block, JNU, New Delhi – 110067, Email: recruitmentjnu2013@gmail.com The last date for the receipt of application is 15 May, 2014.</p>

<p>http://www.jnu.ac.in/Career/</p>

<p>http://www.jnu.ac.in/Career/ADVTNo_RC_48_2014.pdf<br />Last Apply Date:</p>

<p>15 May 2014</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2422/bioinformatics-codes-search</guid>
	<pubDate>Thu, 15 Aug 2013 11:08:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2422/bioinformatics-codes-search</link>
	<title><![CDATA[Bioinformatics Codes Search]]></title>
	<description><![CDATA[<p>I bet, this website will be your best friend in near future. This helps us to explore the existing open source codes and learn from it.</p>
<p>You can find some useful open source bioinformatics codes for your analysis work. You can use the left bar options to filtere out or narrow down your search result. This webpage can be an useful resource for a beginners bioinformatician as it contain several bioinformatics basics script that are commonly used by biological programmers and biologist.</p>
<p>Stand on the slumped, dandruff-covered shoulders of millions of computer nerds. _/\_</p>
<p>Enjoy the code and research work.</p>
<p>http://code.ohloh.net/search?s=bioinformatics</p><p>Address of the bookmark: <a href="http://code.ohloh.net/search?s=bioinformatics" rel="nofollow">http://code.ohloh.net/search?s=bioinformatics</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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