Comment on "Installing BLAT on Linux !"
...do this now for Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fetch the entire source in a single file: rsync -azvP rsync://hgdownl...1355 days ago
Comment on "URMAP, an ultra-fast read mapper"
...nce genome is stored as a UFI file created by the make_ufi command. The original FASTA file for the reference is not need...expensive than the additional file i/o time required to read the...a pipe, use /dev/stdin as the filename. To send output to a pip...1428 days ago
Comment on "Sibelia: A comparative genomics tool"
...u can specify multiple FASTA files, just separate them with spa...locks 3. Coverage report 4. Files for generating a "Circos" pi...input sequences. Sequences file -------------- File name =...your own parameter set. Stage file that you may use to specify...1430 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...s example will align three genomes and output a file /data/output/mygenomes.maf. T...tory setting is also used for storing temporary files during the run.The prefix of...es a reference-based stand-alone viewer for MAF files. java -jar gmaj.jar mygenom...1430 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...The first thing we need to do is to combine the reads into a single file, for gzipped files, this can be done with ...ally, clean up you working directory by removing the combined fasta file, and re-zipping any unzipped...1482 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...y.fasta> <renamed_assembly.fasta>, and you will get an assembly file with renamed contigs. Once t...pr perfectmap to get information on how to create a perfect mapping file, and create a perfect mapping...1482 days ago
1506 days ago
Comment on "Setting up autoConTAMPR !"
...s-perl.(Reading database ... 43981 files and directories currently in...r-perl.(Reading database ... 43989 files and directories currently in...-read1.(Reading database ... 44971 files and directories currently in...-1.58 ... OKSuccessfully installed File-Remove-1.581 distribution ins...1587 days ago
1665 days ago
Comment on "Install Parrot Virtual Machine !"
File system of Parrot http://ccl.cse.nd.edu/software/parrot/1680 days ago