561 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequenci...566 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://xconomy.com/san-diego/2019/12/18/ftc-challenges-pacbio-acquisition-says-illumina-is-a-monopolist/1672 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).2096 days ago
2244 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...within reads. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless overriden. [null] (Illumina Moleculo) pacbio (PacBio SMRT): -i25 -l50 -m1 -M1 -O1,...2268 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...;in the code below) for analyzing PacBio data. Minimap only accepts tw...2 -x ava-pb -t 23 \ 20170911_oly_pacbio_cat.fastq \ 20170911_oly_pac...\ -f \ /home/data/20170911_oly_pacbio_cat.fastq /home/data/20170911...170918_minimap2_mapping_fasta_oly_pacbio.paf 5 Run racon The output...2313 days ago
2320 days ago