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<channel>
	<title><![CDATA[BOL: Results for "3D"]]></title>
	<link>https://bioinformaticsonline.com/search?q=3D&amp;search_type=all</link>
	<atom:link href="https://bioinformaticsonline.com/search?q=3D&amp;search_type=all" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/profile/Abid</guid>
	<pubDate>Wed, 11 Mar 2015 11:02:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/profile/Abid</link>
	<title><![CDATA[ABID ALI]]></title>
	<description><![CDATA[Skills: <strong class="search-highlight search-highlight-color1">3D</strong>QSAR]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/blog/view/38238/list-of-motif-discovery-tools</guid>
	<pubDate>Tue, 20 Nov 2018 03:54:26 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/38238/list-of-motif-discovery-tools</link>
	<title><![CDATA[List of motif discovery tools !]]></title>
	<description><![CDATA[...dictions on protein sequences.


<strong class="search-highlight search-highlight-color1">3D</strong>-footprint -- database of DNA-...n about DNA-protein complexes.


<strong class="search-highlight search-highlight-color1">3D</strong>-footprint: DNA-binding protei...s.


Frog2 -- a FRee Online druG <strong class="search-highlight search-highlight-color1">3D</strong> conformation generator
Produ...fs in a protein sequence.


Motif<strong class="search-highlight search-highlight-color1">3D</strong> -- Relating protein sequence...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/blog/view/41804/useful-links-to-therapy-disease-drug-and-drug-target-network-data</guid>
	<pubDate>Mon, 01 Jun 2020 11:47:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/41804/useful-links-to-therapy-disease-drug-and-drug-target-network-data</link>
	<title><![CDATA[Useful links to therapy, disease, drug and drug-target network data:]]></title>
	<description><![CDATA[...ific.thomson.com/products/iddb/HOMIM: a knowledgebase of human genes and genetic disorders http://www.ncbi.nlm.nih.gov/ sites/entrez?db=omim
PDTD:
<strong class="search-highlight search-highlight-color1">3D</strong> drug target structure databas...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/4038/java-and-biojava-tutorial-links</guid>
	<pubDate>Wed, 28 Aug 2013 06:33:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4038/java-and-biojava-tutorial-links</link>
	<title><![CDATA[Java and BioJava Tutorial links]]></title>
	<description><![CDATA[BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and <strong class="search-highlight search-highlight-color1">3D</strong> structures. The goal of this bookmark is to provide useful links for bioinformatician.
Please add more useful Java and BioJava links here ...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/19786/shrec3d</guid>
	<pubDate>Thu, 25 Dec 2014 23:14:52 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19786/shrec3d</link>
	<title><![CDATA[ShRec3D]]></title>
	<description><![CDATA[ShRec<strong class="search-highlight search-highlight-color1">3D</strong> is a program that aims at reconstructing a genome <strong class="search-highlight search-highlight-color1">3D</strong> structure (b) from the sole knowledge of the contacts between diff...i.nlm.nih.gov/pubmed/19815776).
There are two options to run ShRec<strong class="search-highlight search-highlight-color1">3D</strong> (on linuX only so far): the f...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/30440/genome-assembly-tools-and-software-part2</guid>
	<pubDate>Tue, 27 Dec 2016 16:14:35 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/30440/genome-assembly-tools-and-software-part2</link>
	<title><![CDATA[Genome Assembly Tools and Software - PART2 !!]]></title>
	<description><![CDATA[The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput sho...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/33839/awesome-perl-frameworks-libraries-and-software-part-2</guid>
	<pubDate>Fri, 07 Jul 2017 04:09:04 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/33839/awesome-perl-frameworks-libraries-and-software-part-2</link>
	<title><![CDATA[Awesome perl frameworks, libraries and software - PART 2]]></title>
	<description><![CDATA[...;- Find sub domains with Perl
fayland/perl-javascript-beautifier&nbsp;- Perl: Beautify Javascript (beautifier for javascript)
ding-lab/hotspot<strong class="search-highlight search-highlight-color1">3d</strong>&nbsp;- <strong class="search-highlight search-highlight-color1">3D</strong> hotspot mutation proximity an...]]></description>
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<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/901/bioinformatics-definitions</guid>
	<pubDate>Mon, 15 Jul 2013 03:01:07 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/901/bioinformatics-definitions</link>
	<title><![CDATA[Bioinformatics Definitions]]></title>
	<description><![CDATA[...d, including primary sequence alignment, protein <strong class="search-highlight search-highlight-color1">3D</strong> structure alignment, phylogen...ns describing the function of a protein. Protein <strong class="search-highlight search-highlight-color1">3D</strong> structures are stored in spec...ein structures. Ab initio predictions of protein <strong class="search-highlight search-highlight-color1">3D</strong> structure remains the major c...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/920/bioinformatics-algorithms</guid>
	<pubDate>Tue, 16 Jul 2013 03:35:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/920/bioinformatics-algorithms</link>
	<title><![CDATA[Bioinformatics Algorithms]]></title>
	<description><![CDATA[...s/l7/index.htm&bull;http://www.ms.unimelb.edu.au/~moshe/dp/dp.html&bull;http://mat.gsia.cmu.edu/ORCS/0255.html&bull;http://aae.wisc.edu/e703/notes/a1<strong class="search-highlight search-highlight-color1">3d</strong>ynpr.htm&bull;http://bioweb.pa...]]></description>
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<item>
	<guid isPermaLink='false'>14331</guid>
	<pubDate>Sun, 24 Aug 2014 05:51:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/14331</link>
	<title><![CDATA[Wire post by Jitendra Narayan]]></title>
	<description><![CDATA[NEMO: a tool for analyzing gene and chromosome territory distributions from <strong class="search-highlight search-highlight-color1">3D</strong>-FISH experiments http://bioinformatics.oxfordjournals.org/content/26/5/696.full #NEMO #Chromatin #Territory]]></description>
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<item>
	<guid isPermaLink='false'>14328</guid>
	<pubDate>Sun, 24 Aug 2014 05:48:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/14328</link>
	<title><![CDATA[Wire post by Jitendra Narayan]]></title>
	<description><![CDATA[HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin <strong class="search-highlight search-highlight-color1">3D</strong> organization http://bioinformatics.oxfordjournals.org/content/early/2014/02/07/bioinformatics.btu082.full.pdf #Chromatin #HiBro]]></description>
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<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/news/view/4295/rcsb-pdb-sept13-release</guid>
	<pubDate>Thu, 05 Sep 2013 15:07:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4295/rcsb-pdb-sept13-release</link>
	<title><![CDATA[RCSB PDB Sept'13 Release]]></title>
	<description><![CDATA[RCSB PDB Sept'13 Release offers following new features:
- New tools to search for drugs and drug targets- Improved interface for <strong class="search-highlight search-highlight-color1">3D</strong> visualisation using Jmol/JSmol- An update to the...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/news/view/6128/wscc-%E2%80%93-2013</guid>
	<pubDate>Sat, 09 Nov 2013 18:35:18 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/6128/wscc-%E2%80%93-2013</link>
	<title><![CDATA[WSCC – 2013]]></title>
	<description><![CDATA[...uantitative Structure&ndash;Activity Relationships (QSAR); Structure property correlation; Molecular descriptors; Application in biological systems; <strong class="search-highlight search-highlight-color1">3D</strong>-QSAR&nbsp; &nbsp;[Dr. Sudhir...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4353/project-fellow-alagappa-university</guid>
	<pubDate>Sat, 07 Sep 2013 14:24:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/opportunity/view/4353/project-fellow-alagappa-university</link>
	<title><![CDATA[Project Fellow @ Alagappa University]]></title>
	<description><![CDATA[...Eligible candidates can attend walk in interview for the post of Project Fellow in UGC supported project entitled “Shape and chemical feature based <strong class="search-highlight search-highlight-color1">3D</strong>- Pharmacophore Model generati...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4706/junior-research-fellow-iit</guid>
	<pubDate>Sat, 21 Sep 2013 18:04:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/opportunity/view/4706/junior-research-fellow-iit</link>
	<title><![CDATA[Junior Research Fellow @ IIT]]></title>
	<description><![CDATA[...e duration of the project. The requisite qualification &amp; experience etc. are given below:
 
Project Code, Project Title &amp; Funding Agency
1<strong class="search-highlight search-highlight-color1">3D</strong>ST016 : "Studies on the compon...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/videolist/watch/3918/the-human-genome-project-video-3d-animation-introduction-low</guid>
	<pubDate>Sat, 24 Aug 2013 19:01:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/3918/the-human-genome-project-video-3d-animation-introduction-low</link>
	<title><![CDATA[The Human Genome Project Video   3D Animation Introduction Low)]]></title>
	<description><![CDATA[]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/videolist/watch/6665/fertilization-conception</guid>
	<pubDate>Fri, 22 Nov 2013 03:00:35 -0600</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/6665/fertilization-conception</link>
	<title><![CDATA[Fertilization (Conception)]]></title>
	<description><![CDATA[...imations at http://www.nucleuslibrary.com

To download FREE medical animations of pregnancy and birth, visit http://www.prenateperl.com/yt2012  This <strong class="search-highlight search-highlight-color1">3D</strong> medical animation shows human...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/snippets/view/37500/installing-nextsv-on-ubuntu</guid>
	<pubDate>Mon, 06 Aug 2018 17:35:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/snippets/view/37500/installing-nextsv-on-ubuntu</link>
	<title><![CDATA[Installing NextSV on Ubuntu !]]></title>
	<description><![CDATA[...➜  nextsv git:(master) pip install argparse
Collecting argparse
  Downloading https://files.pythonhosted.org/packages/f2/94/3af39d34be01a24a6e6543<strong class="search-highlight search-highlight-color1">3d</strong>19e107099374224905f1e0cc6bbe1f...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/snippets/view/37613/downloading-gatk</guid>
	<pubDate>Thu, 30 Aug 2018 04:54:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/snippets/view/37613/downloading-gatk</link>
	<title><![CDATA[Downloading GATK !]]></title>
	<description><![CDATA[...ers=host&actor_id=0&response-content-disposition=attachment%3B%20filename%<strong class="search-highlight search-highlight-color1">3D</strong>gatk-4.0.2.1.zip&response-cont...ers=host&actor_id=0&response-content-disposition=attachment%3B%20filename%<strong class="search-highlight search-highlight-color1">3D</strong>gatk-4.0.2.1.zip&response-cont...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/thewire/view/20365</guid>
	<pubDate>Mon, 12 Jan 2015 02:04:56 -0600</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/20365</link>
	<title><![CDATA[]]></title>
	<description><![CDATA[3D genome http://www.cam.ac.uk/research/news/structure-of-chromosomes-revealed #Genome #3D #Chromosome]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/thewire/view/24385</guid>
	<pubDate>Thu, 10 Sep 2015 20:28:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/24385</link>
	<title><![CDATA[]]></title>
	<description><![CDATA[3D genome data and tool http://bengal.missouri.edu/~chengji/nsf_career.html #Chromosome #HiC #Analysis #Construction #Visualization #Modeling #3D #Genome #Structures]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/36403/ngmlr-long-read-mapper-designed-to-align-pacbio-or-oxford-nanopore#annotation-3745</guid>
	<pubDate>Sun, 02 Feb 2020 23:38:04 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36403/ngmlr-long-read-mapper-designed-to-align-pacbio-or-oxford-nanopore#annotation-3745</link>
	<title><![CDATA[Comment on "NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore" by Rahul Nayak]]></title>
	<description><![CDATA[...&amp;actor_id=0&amp;response-content-disposition=attachment%3B%20filename%<strong class="search-highlight search-highlight-color1">3D</strong>ngmlr-0.2.7-linux-x86_64.tar.g...&amp;actor_id=0&amp;response-content-disposition=attachment%3B%20filename%<strong class="search-highlight search-highlight-color1">3D</strong>ngmlr-0.2.7-linux-x86_64.tar.g...]]></description>
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<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/6300/list-of-bioinformatics-vacancy-jobs-opportunity-websites#annotation-935</guid>
	<pubDate>Wed, 13 Nov 2013 13:28:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/6300/list-of-bioinformatics-vacancy-jobs-opportunity-websites#annotation-935</link>
	<title><![CDATA[Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites" by Manisha Mishra]]></title>
	<description><![CDATA[Bioinformatics jobs in UK @ http://www.jobs.ac.uk/search/?csrf=d04713ea<strong class="search-highlight search-highlight-color1">3d</strong>8ce14e8b2bc51b4e1272ef0c2119fe&amp;keywords=bioinformatics&amp;x=23&amp;y=21]]></description>
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